View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18118_low_4 (Length: 467)
Name: NF18118_low_4
Description: NF18118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18118_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 29138985 - 29139433
Alignment:
| Q |
1 |
tcatttgaaaccatagcaacaaatcaaatcaaataatccaaaagttcaaactcacactcttaacagaacagaactaccaacaacagaacaaagtaactca |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29138985 |
tcatttgaaaccataacaacaaatcaaatcaaataatccaaaagttcaaactcacactcttaacagaacagaaccaccaacaacagaacaaagtaactca |
29139084 |
T |
|
| Q |
101 |
ttaaggttttccatcactcttcaaatccaagaggcaagctttggaattttcttaggctttcttcttcattactcttcaacttcaaaacccatcaaggaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29139085 |
ttaaggttttccatcactcttcaaatccaagaggcaagctttggaattttcttaggctttcttcttcattactcttcaacttcaaaacccatcaaggaat |
29139184 |
T |
|
| Q |
201 |
tgcatacttgtttcttccttagtcatgattttggtatgttcctcttttcttcttgtaacagcttctttcttccatgttttagtccataactttttcatga |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29139185 |
tgcatatttgtttcttccttagtcatgattttggtatgttcctcttttcttcttgtaacagcttctttcttccatgttttagtccataactttttcatga |
29139284 |
T |
|
| Q |
301 |
gtcggtgataactgtcttgttttctatgtttctgagttataaaagtttcagttttttatcacaagtttatgaatttgtgctctacattatctttttctta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29139285 |
gtcggtgataactgtcttgttttctatgtttctgagttataaaagtttcagttttttatcacaagtttatgaatttgtgctctacattatctttttctta |
29139384 |
T |
|
| Q |
401 |
tttgcttttcttgttggatttgcaatgagtctacttgagaatcttggta |
449 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29139385 |
tttgctttgcttgttggatttgcaatgagtctacttgagaatcttggta |
29139433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University