View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18118_low_5 (Length: 454)
Name: NF18118_low_5
Description: NF18118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18118_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 44348188 - 44348400
Alignment:
| Q |
1 |
taggtatgatatgaaaagtaattacatttgagaagtgttgatttgaatatttgttggcaaactgaaaaggtaacttgattatgtttgtgtttagataaac |
100 |
Q |
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| T |
44348188 |
taggtatgatatgaaaagtaattacatttgagaagtgttgatttgaatatttgttggcaaactgaaaaggtaacttgattatgtttgtgtttagataaac |
44348287 |
T |
|
| Q |
101 |
aatttaatgtttgtttggttttgccgcaacaaaaactaaaagtgatttgaatgtgaatcactttatgtttggatacattcacgtaacatgagttgaacaa |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44348288 |
aatttaatgtttgtttggttttgctgcaacaaaaactaaaagtgatttgaatgtgaatcactttatgtttggatacattcacgtaacatgagttgaacaa |
44348387 |
T |
|
| Q |
201 |
gaaaattgaggct |
213 |
Q |
| |
|
||||||||||||| |
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| T |
44348388 |
gaaaattgaggct |
44348400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 233 - 439
Target Start/End: Original strand, 44348390 - 44348596
Alignment:
| Q |
233 |
aaattgcgacttcaagttagagtcaattttggaaggaaaatcattcctattcaaaaaaggcatccagttataagaaaacacaatttggactcctccaaaa |
332 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44348390 |
aaattgaggcttcaagttagagtcaattttggaaggaaaatcagtcctattcaaaaaaggcatccagttataagaaaacacaatttggactcctccaaaa |
44348489 |
T |
|
| Q |
333 |
tagaaacaaacatacacttaattaatcgcttattatgtaagtgtttaagtataagctatttctatgatagaagataaaaatagattgaattgttttcatg |
432 |
Q |
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| T |
44348490 |
tagaaacaaacatacacttaattaatcgcttattatgtaagtgtttaagtataagctatttctatgatagaagataaaaatagattgaattgttttcatg |
44348589 |
T |
|
| Q |
433 |
tagctat |
439 |
Q |
| |
|
||||||| |
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| T |
44348590 |
tagctat |
44348596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 411
Target Start/End: Original strand, 4558722 - 4558771
Alignment:
| Q |
362 |
ttattatgtaagtgtttaagtataagctatttctatgatagaagataaaa |
411 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||| ||||||||| |
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|
| T |
4558722 |
ttattatgtaagtgtttatgtataagctatttctataataaaagataaaa |
4558771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 7200996 - 7200939
Alignment:
| Q |
354 |
ttaatcgcttattatgtaagtgtttaagtataagctatttctatgatagaagataaaa |
411 |
Q |
| |
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|||||||||||| ||||||||||||| ||||||||||||| || ||| ||||||||| |
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| T |
7200996 |
ttaatcgcttatcatgtaagtgtttacttataagctatttccataataaaagataaaa |
7200939 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 2514624 - 2514675
Alignment:
| Q |
360 |
gcttattatgtaagtgtttaagtataagctatttctatgatagaagataaaa |
411 |
Q |
| |
|
|||||| ||||||||| ||| ||||||||||||||||| ||| ||||||||| |
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|
| T |
2514624 |
gcttatcatgtaagtgcttatgtataagctatttctataataaaagataaaa |
2514675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 33823440 - 33823391
Alignment:
| Q |
348 |
acttaattaatcgcttattatgtaagtgtttaagtataagctatttctat |
397 |
Q |
| |
|
|||||||||| |||||||||| ||| |||||| | ||||||||||||||| |
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|
| T |
33823440 |
acttaattaaacgcttattatataaatgtttatgcataagctatttctat |
33823391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 411
Target Start/End: Complemental strand, 38239692 - 38239648
Alignment:
| Q |
367 |
atgtaagtgtttaagtataagctatttctatgatagaagataaaa |
411 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | | ||||||||| |
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| T |
38239692 |
atgtaagtgtttatgtataagctatttctataacaaaagataaaa |
38239648 |
T |
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