View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18118_low_7 (Length: 367)
Name: NF18118_low_7
Description: NF18118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18118_low_7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 6 - 367
Target Start/End: Original strand, 22813803 - 22814165
Alignment:
| Q |
6 |
gtagattattctgtaagcacatcccctgtgttctaagcactatgtcataaagttttgtacacaatttattacatgaatcatgttaaattcatacaccatg |
105 |
Q |
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| T |
22813803 |
gtagattagtttataagcacatcccctgtgttctaagcactatgtcataaagatttgtacacaatttattacatgaatcatgttaaattcatacactgtg |
22813902 |
T |
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| Q |
106 |
tactttacattata-ataaaacactaagagtatgataagaaaattaccctgagctggttctggcatgtattttgcaattctatacttctgcaaatgactt |
204 |
Q |
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| T |
22813903 |
taatttacattatagataaaacactatgagtatggtaacaaaattaccttgagctggttccggcatgtatttggcaattctatacttctgcaaatgactt |
22814002 |
T |
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| Q |
205 |
ttaacatggaaaattgtcaatccatctgaatccatcagccttaatatcgctttcggtgttgcctctacaatcaagcagccaagattacaatcaaattttc |
304 |
Q |
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| T |
22814003 |
ttaacatggaagattgtcaatccgtctgaatccatcagccttaatatcgctttcggtgttgcctctacaatcaagcagccaagattacaatcaaattttc |
22814102 |
T |
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| Q |
305 |
gcagccgattactttctaacaacattttcaattttaactttttatgtaggtcgctggaacgat |
367 |
Q |
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| T |
22814103 |
gcagccgattactttctaacaacattttcaattttaactttttatgtaggtcgctggatcgat |
22814165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 144 - 276
Target Start/End: Original strand, 22810819 - 22810951
Alignment:
| Q |
144 |
aaaattaccctgagctggttctggcatgtattttgcaattctatacttctgcaaatgacttttaacatggaaaattgtcaatccatctgaatccatcagc |
243 |
Q |
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| T |
22810819 |
aaaattaccctgagctggttcagccatgtattttgccattctatatttcttcaaatgacttttaacttggaagattgtcaatccatctaactgcatcagc |
22810918 |
T |
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| Q |
244 |
cttaatatcgctttcggtgttgcctctacaatc |
276 |
Q |
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| T |
22810919 |
attaatatagcttttggtaacgcctctacaatc |
22810951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 145 - 286
Target Start/End: Original strand, 36941366 - 36941507
Alignment:
| Q |
145 |
aaattaccctgagctggttctggcatgtattttgcaattctatacttctgcaaatgacttttaacatggaaaattgtcaatccatctgaatccatcagcc |
244 |
Q |
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| T |
36941366 |
aaattaccttgagctgactctggcatgaattttgcagttctatatttctgcaaatgacttttcacatgaaatatagttaagccttcagagtccatcatct |
36941465 |
T |
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| Q |
245 |
ttaatatcgctttcggtgttgcctctacaatcaagcagccaa |
286 |
Q |
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| T |
36941466 |
tcaatatagcttttggtgttgcctctataatcaagcaaccaa |
36941507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 48362865 - 48362815
Alignment:
| Q |
313 |
ttactttctaacaacattttcaattttaactttttatgtaggtcgctggaa |
363 |
Q |
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| T |
48362865 |
ttactttctaacaacattttcaattttcactttataggtgggtggctggaa |
48362815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 44643232 - 44643269
Alignment:
| Q |
313 |
ttactttctaacaacattttcaattttaactttttatg |
350 |
Q |
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| T |
44643232 |
ttactttctaacaacattttcaatttttactttgtatg |
44643269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 363
Target Start/End: Complemental strand, 20081592 - 20081544
Alignment:
| Q |
315 |
actttctaacaacattttcaattttaactttttatgtaggtcgctggaa |
363 |
Q |
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||||||||||||||||||||||||| |||| |||||||| ||||||| |
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| T |
20081592 |
actttctaacaacattttcaattttttctttgaatgtaggtggctggaa |
20081544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 44800870 - 44800838
Alignment:
| Q |
313 |
ttactttctaacaacattttcaattttaacttt |
345 |
Q |
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| T |
44800870 |
ttactttctaacaacattttcaatttttacttt |
44800838 |
T |
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