View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18118_low_9 (Length: 332)

Name: NF18118_low_9
Description: NF18118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18118_low_9
NF18118_low_9
[»] chr8 (12 HSPs)
chr8 (14-332)||(9700116-9700434)
chr8 (288-332)||(31891926-31891970)
chr8 (289-324)||(27493060-27493095)
chr8 (291-327)||(38602447-38602483)
chr8 (288-331)||(16825454-16825497)
chr8 (288-327)||(30251365-30251404)
chr8 (288-327)||(37461261-37461300)
chr8 (286-332)||(31862607-31862652)
chr8 (291-332)||(16162875-16162916)
chr8 (288-325)||(33553362-33553399)
chr8 (296-332)||(9130238-9130274)
chr8 (292-332)||(10075468-10075508)
[»] chr5 (13 HSPs)
chr5 (288-332)||(7705909-7705953)
chr5 (288-325)||(35299887-35299924)
chr5 (292-332)||(6938648-6938688)
chr5 (288-332)||(9174931-9174975)
chr5 (288-327)||(14331486-14331525)
chr5 (294-332)||(16937800-16937838)
chr5 (294-332)||(26004914-26004952)
chr5 (289-326)||(39594928-39594965)
chr5 (295-327)||(6715869-6715901)
chr5 (288-332)||(8651263-8651307)
chr5 (296-332)||(8820875-8820911)
chr5 (291-327)||(10640073-10640109)
chr5 (288-332)||(11153357-11153401)
[»] chr7 (12 HSPs)
chr7 (289-332)||(17988945-17988988)
chr7 (288-332)||(25596147-25596191)
chr7 (296-332)||(40598404-40598440)
chr7 (276-327)||(37064367-37064418)
chr7 (286-324)||(28727672-28727710)
chr7 (290-332)||(40252036-40252078)
chr7 (288-332)||(529477-529521)
chr7 (296-332)||(1418534-1418570)
chr7 (292-324)||(4970707-4970739)
chr7 (296-332)||(23214970-23215006)
chr7 (295-327)||(30134252-30134284)
chr7 (288-324)||(40371565-40371601)
[»] chr6 (8 HSPs)
chr6 (285-332)||(12111082-12111129)
chr6 (292-332)||(32205928-32205968)
chr6 (293-332)||(2460067-2460106)
chr6 (295-332)||(835179-835216)
chr6 (295-332)||(9202903-9202940)
chr6 (297-325)||(738461-738489)
chr6 (288-324)||(9109025-9109061)
chr6 (291-327)||(30536879-30536915)
[»] chr4 (14 HSPs)
chr4 (292-327)||(17822780-17822815)
chr4 (288-332)||(18815138-18815182)
chr4 (288-332)||(23319966-23320010)
chr4 (292-332)||(39691064-39691104)
chr4 (288-327)||(27043741-27043780)
chr4 (293-332)||(27123268-27123307)
chr4 (288-323)||(42403934-42403969)
chr4 (290-332)||(21953388-21953430)
chr4 (290-332)||(35571544-35571586)
chr4 (291-328)||(22662165-22662202)
chr4 (291-328)||(22666644-22666681)
chr4 (288-317)||(41512769-41512798)
chr4 (295-327)||(18512433-18512465)
chr4 (290-326)||(32769500-32769536)
[»] chr3 (9 HSPs)
chr3 (294-332)||(40240738-40240776)
chr3 (291-332)||(51929856-51929897)
chr3 (296-332)||(24684741-24684777)
chr3 (297-332)||(584161-584196)
chr3 (288-325)||(5407365-5407402)
chr3 (291-332)||(44014712-44014753)
chr3 (288-324)||(1820043-1820079)
chr3 (289-325)||(15304280-15304316)
chr3 (296-328)||(50211854-50211886)
[»] chr2 (15 HSPs)
chr2 (291-332)||(449962-450003)
chr2 (288-332)||(9996853-9996897)
chr2 (292-332)||(15370238-15370278)
chr2 (289-332)||(10563472-10563515)
chr2 (290-324)||(26202151-26202185)
chr2 (288-329)||(2790356-2790397)
chr2 (288-325)||(7928209-7928246)
chr2 (295-332)||(15120298-15120335)
chr2 (295-328)||(18179068-18179101)
chr2 (293-326)||(27317500-27317533)
chr2 (288-325)||(28810363-28810400)
chr2 (290-326)||(2964722-2964758)
chr2 (290-326)||(4607046-4607082)
chr2 (290-326)||(6772446-6772482)
chr2 (288-332)||(33931481-33931525)
[»] chr1 (14 HSPs)
chr1 (288-328)||(10199319-10199359)
chr1 (288-327)||(2295311-2295350)
chr1 (296-331)||(3319865-3319900)
chr1 (295-325)||(37431858-37431888)
chr1 (295-325)||(52014009-52014039)
chr1 (299-332)||(2832087-2832120)
chr1 (290-327)||(24460314-24460351)
chr1 (295-332)||(30013997-30014034)
chr1 (295-331)||(1565064-1565100)
chr1 (288-332)||(15477668-15477712)
chr1 (296-332)||(29045852-29045888)
chr1 (290-322)||(36523201-36523233)
chr1 (292-332)||(40303994-40304034)
chr1 (296-328)||(50644174-50644206)
[»] scaffold0020 (1 HSPs)
scaffold0020 (291-328)||(159887-159924)


Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 14 - 332
Target Start/End: Complemental strand, 9700434 - 9700116
Alignment:
Q  14 cctgtgaaaatgaagtgattgacgcaacatccccactccaattaaatcccttatcttgcgaactttttggcatacggccttctaaataatctgacaatat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9700434 cctgtgaaaatgaagtgattgacgcaacatccccactccaattaaatcccttatcttgcgaactttttggcatacggccttctaaataatctgacaatat 9700335  T
Q  114 gatacttggaagaccattccttttggtgatctgtctctttttaggatcataattagaaatcaggcattcaacaaaatgcttaacagctgcataagcacgt 213  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9700334 gatacttggaagaccattccttctggtgatctgtctctttttaggatcataattagaaatcaggcattcaacaaaatgcttaacagctgcataagcacgt 9700235  T
Q  214 ttccagttgcctgaaaaatataaaaataacaatgcggcgtgaaaaaatgatataattcccatcacatgcttgagtaagggcctgtttggattaacttatt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9700234 ttccagttgcctgaaaaatataaaaataacaatgcggcgtgaaaaaatgatataattcccatcacatgcttgagtaagggcctgtttggattaacttatt 9700135  T
Q  314 tgagcttatctactagcat 332  Q
    |||||||||||||||||||    
T  9700134 tgagcttatctactagcat 9700116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 31891970 - 31891926
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||    
T  31891970 taagggcctgtttggattaatttatttgagtttatctactagcat 31891926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 27493095 - 27493060
Alignment:
Q  289 aagggcctgtttggattaacttatttgagcttatct 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  27493095 aagggcctgtttggattaacttatttgagcttatct 27493060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 38602483 - 38602447
Alignment:
Q  291 gggcctgtttggattaacttatttgagcttatctact 327  Q
    ||||||||||||||| |||||||||||||||||||||    
T  38602483 gggcctgtttggattgacttatttgagcttatctact 38602447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 16825454 - 16825497
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatctactagca 331  Q
    |||||||||||||||| || ||||||||| ||||||||||||||    
T  16825454 taagggcctgtttggactagcttatttgaacttatctactagca 16825497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 327
Target Start/End: Original strand, 30251365 - 30251404
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatctact 327  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  30251365 taagggcctgtttggattggcttatttgagcttatctact 30251404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 327
Target Start/End: Complemental strand, 37461300 - 37461261
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatctact 327  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  37461300 taagagcctgtttggattaacttatttgaacttatctact 37461261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 31862652 - 31862607
Alignment:
Q  286 agtaagggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||||||||||||| ||| |||||||||||||| |||||||||||    
T  31862652 agtaagggcctgtttgaattgacttatttgagctt-tctactagcat 31862607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 16162916 - 16162875
Alignment:
Q  291 gggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||||||||||||  |||||||||| ||||||||||||||    
T  16162916 gggcctgtttggattggcttatttgagtttatctactagcat 16162875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 325
Target Start/End: Complemental strand, 33553399 - 33553362
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatcta 325  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  33553399 taagggcttgtttggattagcttatttgagcttatcta 33553362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 9130238 - 9130274
Alignment:
Q  296 tgtttggattaacttatttgagcttatctactagcat 332  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  9130238 tgtttggattagcttatttgagcttatctactggcat 9130274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 10075468 - 10075508
Alignment:
Q  292 ggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    ||||||||| |||||||||||||||| ||||||||| ||||    
T  10075468 ggcctgtttcgattaacttatttgagtttatctactggcat 10075508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 7705909 - 7705953
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||||||||||||||| |||||||||||| |||||||||||||    
T  7705909 taagggcctgtttggattgacttatttgagcatatctactagcat 7705953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 325
Target Start/End: Complemental strand, 35299924 - 35299887
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatcta 325  Q
    |||||||||||||||||| |||||||||||||||||||    
T  35299924 taagggcctgtttggattgacttatttgagcttatcta 35299887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 6938648 - 6938688
Alignment:
Q  292 ggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  6938648 ggcctgtttggattaggttatttgagcttatctactagcat 6938688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 9174975 - 9174931
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||||    
T  9174975 taagggcatgtttggattgacttatttgagcttatctattagcat 9174931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 327
Target Start/End: Complemental strand, 14331525 - 14331486
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatctact 327  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  14331525 taagggtctgtttggattgacttatttgagcttatctact 14331486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 16937800 - 16937838
Alignment:
Q  294 cctgtttggattaacttatttgagcttatctactagcat 332  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  16937800 cctgtttggattggcttatttgagcttatctactagcat 16937838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 26004914 - 26004952
Alignment:
Q  294 cctgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  26004914 cctgtttggattgacttattttagcttatctactagcat 26004952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 39594965 - 39594928
Alignment:
Q  289 aagggcctgtttggattaacttatttgagcttatctac 326  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  39594965 aagggcttgtttggattgacttatttgagcttatctac 39594928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 6715869 - 6715901
Alignment:
Q  295 ctgtttggattaacttatttgagcttatctact 327  Q
    ||||||||||||||||||| |||||||||||||    
T  6715869 ctgtttggattaacttattcgagcttatctact 6715901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 8651263 - 8651307
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    ||||||| ||||||||||  ||||||||||||||||| |||||||    
T  8651263 taagggcatgtttggattgccttatttgagcttatcttctagcat 8651307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 8820911 - 8820875
Alignment:
Q  296 tgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||||||| |||||||||| |||||||||||||||    
T  8820911 tgtttggatttacttatttgatcttatctactagcat 8820875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 10640109 - 10640073
Alignment:
Q  291 gggcctgtttggattaacttatttgagcttatctact 327  Q
    |||||||||||||||| |||||||||| |||||||||    
T  10640109 gggcctgtttggattagcttatttgagtttatctact 10640073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 11153357 - 11153401
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||| |||||||||||  ||| |||||||||||||||||||||    
T  11153357 taaggggctgtttggattggcttgtttgagcttatctactagcat 11153401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 332
Target Start/End: Original strand, 17988945 - 17988988
Alignment:
Q  289 aagggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||| |||||||||||||||||||||||||||||||| ||||    
T  17988945 aagggcttgtttggattaacttatttgagcttatctactcgcat 17988988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 25596191 - 25596147
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||||||||||||| | |||||||||||||||||||| |||||    
T  25596191 taagggcctgtttggactgacttatttgagcttatctaccagcat 25596147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 40598404 - 40598440
Alignment:
Q  296 tgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||||||| ||||||||||||||||||||||||||    
T  40598404 tgtttggattgacttatttgagcttatctactagcat 40598440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 37064367 - 37064418
Alignment:
Q  276 cacatgcttgagtaagggcctgtttggattaacttatttgagcttatctact 327  Q
    ||||||||| | |||||| ||||||||||| |||||||||| ||||||||||    
T  37064367 cacatgcttaattaagggtctgtttggattgacttatttgatcttatctact 37064418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 324
Target Start/End: Original strand, 28727672 - 28727710
Alignment:
Q  286 agtaagggcctgtttggattaacttatttgagcttatct 324  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  28727672 agtaagagcctatttggattaacttatttgagcttatct 28727710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 40252036 - 40252078
Alignment:
Q  290 agggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||||||||| |||  |||||||||||||||||||||||||    
T  40252036 agggcctgtttgaattggcttatttgagcttatctactagcat 40252078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 529521 - 529477
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||| ||| ||||||| ||||||||||||||||||||| ||||    
T  529521 taagggtctgattggattgacttatttgagcttatctactggcat 529477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 1418570 - 1418534
Alignment:
Q  296 tgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  1418570 tgtttggattgacttatttgagcttatctactggcat 1418534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 324
Target Start/End: Original strand, 4970707 - 4970739
Alignment:
Q  292 ggcctgtttggattaacttatttgagcttatct 324  Q
    |||||||||||||| ||||||||||||||||||    
T  4970707 ggcctgtttggattgacttatttgagcttatct 4970739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 23215006 - 23214970
Alignment:
Q  296 tgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||||||| |||||||||| |||||||||||||||    
T  23215006 tgtttggattgacttatttgaccttatctactagcat 23214970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 327
Target Start/End: Complemental strand, 30134284 - 30134252
Alignment:
Q  295 ctgtttggattaacttatttgagcttatctact 327  Q
    ||||||| |||||||||||||||||||||||||    
T  30134284 ctgtttgaattaacttatttgagcttatctact 30134252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 40371565 - 40371601
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatct 324  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  40371565 taagggcatgtttggattgacttatttgagcttatct 40371601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 12111129 - 12111082
Alignment:
Q  285 gagtaagggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    ||||| |||||| |||||||| ||||||||||||||||||||||||||    
T  12111129 gagtatgggcctatttggattgacttatttgagcttatctactagcat 12111082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 32205928 - 32205968
Alignment:
Q  292 ggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||||||||||| |||||||||| |||||||||||||||    
T  32205928 ggcctgtttggattgacttatttgaccttatctactagcat 32205968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 293 - 332
Target Start/End: Original strand, 2460067 - 2460106
Alignment:
Q  293 gcctgtttggattaacttatttgagcttatctactagcat 332  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  2460067 gcctgtttggattaacttatttgagcttataaactagcat 2460106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 835179 - 835216
Alignment:
Q  295 ctgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||||||||  |||||||||||||||||||||||||    
T  835179 ctgtttggattgccttatttgagcttatctactagcat 835216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 9202903 - 9202940
Alignment:
Q  295 ctgtttggattaacttatttgagcttatctactagcat 332  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  9202903 ctgtttggattgacttatttgagcttatctactggcat 9202940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 325
Target Start/End: Original strand, 738461 - 738489
Alignment:
Q  297 gtttggattaacttatttgagcttatcta 325  Q
    |||||||||||||||||||||||||||||    
T  738461 gtttggattaacttatttgagcttatcta 738489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 9109025 - 9109061
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatct 324  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  9109025 taagggcctgtttggattaacttacttgagtttatct 9109061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 30536879 - 30536915
Alignment:
Q  291 gggcctgtttggattaacttatttgagcttatctact 327  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  30536879 gggcctgtttggattgacttatttgagtttatctact 30536915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 327
Target Start/End: Original strand, 17822780 - 17822815
Alignment:
Q  292 ggcctgtttggattaacttatttgagcttatctact 327  Q
    ||||||||||||||||||||||||||||||||||||    
T  17822780 ggcctgtttggattaacttatttgagcttatctact 17822815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 18815182 - 18815138
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    ||||||||||||||||||  |||||||||||||| ||||||||||    
T  18815182 taagggcctgtttggattggcttatttgagcttacctactagcat 18815138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 23320010 - 23319966
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||    
T  23320010 taagggcctgtttggattggcttatttgagattatctactagcat 23319966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 39691064 - 39691104
Alignment:
Q  292 ggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  39691064 ggcctgtttgaattgacttatttgagcttatctactagcat 39691104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 327
Target Start/End: Original strand, 27043741 - 27043780
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatctact 327  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  27043741 taagggtctgtttggattgacttatttgagcttatctact 27043780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 293 - 332
Target Start/End: Original strand, 27123268 - 27123307
Alignment:
Q  293 gcctgtttggattaacttatttgagcttatctactagcat 332  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  27123268 gcctgtttggattaacttatttgagcttataaactagcat 27123307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 323
Target Start/End: Original strand, 42403934 - 42403969
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatc 323  Q
    |||||||||||||||||| |||||||||||||||||    
T  42403934 taagggcctgtttggattgacttatttgagcttatc 42403969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 21953430 - 21953388
Alignment:
Q  290 agggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||    
T  21953430 agggtctgtttggattgacttatttgagcttatctagtagcat 21953388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 35571544 - 35571586
Alignment:
Q  290 agggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    |||| |||||||||||  |||||||||||||||||||||||||    
T  35571544 agggtctgtttggattggcttatttgagcttatctactagcat 35571586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 22662165 - 22662202
Alignment:
Q  291 gggcctgtttggattaacttatttgagcttatctacta 328  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  22662165 gggcctgtttggattgacttatttgagtttatctacta 22662202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 22666644 - 22666681
Alignment:
Q  291 gggcctgtttggattaacttatttgagcttatctacta 328  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  22666644 gggcctgtttggattgacttatttgagtttatctacta 22666681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 317
Target Start/End: Complemental strand, 41512798 - 41512769
Alignment:
Q  288 taagggcctgtttggattaacttatttgag 317  Q
    ||||||||||||||||||||||||||||||    
T  41512798 taagggcctgtttggattaacttatttgag 41512769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 18512433 - 18512465
Alignment:
Q  295 ctgtttggattaacttatttgagcttatctact 327  Q
    |||||| ||||||||||||||||||||||||||    
T  18512433 ctgtttcgattaacttatttgagcttatctact 18512465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 32769536 - 32769500
Alignment:
Q  290 agggcctgtttggattaacttatttgagcttatctac 326  Q
    |||||||||||||||| |||||||| |||||||||||    
T  32769536 agggcctgtttggattgacttattttagcttatctac 32769500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 40240738 - 40240776
Alignment:
Q  294 cctgtttggattaacttatttgagcttatctactagcat 332  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  40240738 cctgtttggattaacttatttgagcttatatactagcat 40240776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 51929897 - 51929856
Alignment:
Q  291 gggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  51929897 gggcctgtttggattgacttatttgagcttatctattagcat 51929856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 24684741 - 24684777
Alignment:
Q  296 tgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||||||||||||||||||||||||||||| ||||    
T  24684741 tgtttggattaacttatttgagcttatctactggcat 24684777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 297 - 332
Target Start/End: Complemental strand, 584196 - 584161
Alignment:
Q  297 gtttggattaacttatttgagcttatctactagcat 332  Q
    ||||||||| ||||||||||||||||||||||||||    
T  584196 gtttggattgacttatttgagcttatctactagcat 584161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 5407365 - 5407402
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatcta 325  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  5407365 taagggcctgtttgcattagcttatttgagcttatcta 5407402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 44014712 - 44014753
Alignment:
Q  291 gggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||||||||||||  |||||||||| ||||||||||||||    
T  44014712 gggcctgtttggattggcttatttgagtttatctactagcat 44014753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 1820043 - 1820079
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatct 324  Q
    ||||||||||||||||||  |||||||||||||||||    
T  1820043 taagggcctgtttggattggcttatttgagcttatct 1820079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 15304280 - 15304316
Alignment:
Q  289 aagggcctgtttggattaacttatttgagcttatcta 325  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  15304280 aagggcctgtttgaattgacttatttgagcttatcta 15304316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 328
Target Start/End: Complemental strand, 50211886 - 50211854
Alignment:
Q  296 tgtttggattaacttatttgagcttatctacta 328  Q
    ||||||||||||||||||| |||||||||||||    
T  50211886 tgtttggattaacttattttagcttatctacta 50211854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 450003 - 449962
Alignment:
Q  291 gggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  450003 gggcatgtttgcattaacttatttgagcttatctactagcat 449962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 9996897 - 9996853
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    ||||||||||||||| || ||||||||||||||||| ||||||||    
T  9996897 taagggcctgtttggcttgacttatttgagcttatcaactagcat 9996853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 15370238 - 15370278
Alignment:
Q  292 ggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  15370238 ggcctgtttggattgacttatttgagcttatctactggcat 15370278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 332
Target Start/End: Original strand, 10563472 - 10563515
Alignment:
Q  289 aagggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    ||||||||||||||||| |||||||||| ||||||||| |||||    
T  10563472 aagggcctgtttggattgacttatttgaacttatctaccagcat 10563515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 324
Target Start/End: Complemental strand, 26202185 - 26202151
Alignment:
Q  290 agggcctgtttggattaacttatttgagcttatct 324  Q
    ||||||||||||||||||||||||||| |||||||    
T  26202185 agggcctgtttggattaacttatttgaacttatct 26202151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 2790397 - 2790356
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatctactag 329  Q
    ||||||||||||||||||  ||||||||| ||||||||||||    
T  2790397 taagggcctgtttggattggcttatttgaacttatctactag 2790356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 7928209 - 7928246
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatcta 325  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  7928209 taagggcctgtttggattggcttatttgagcttatcta 7928246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 15120335 - 15120298
Alignment:
Q  295 ctgtttggattaacttatttgagcttatctactagcat 332  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  15120335 ctgtttggattgacttatttgaacttatctactagcat 15120298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 328
Target Start/End: Complemental strand, 18179101 - 18179068
Alignment:
Q  295 ctgtttggattaacttatttgagcttatctacta 328  Q
    ||||||||||| ||||||||||||||||||||||    
T  18179101 ctgtttggattgacttatttgagcttatctacta 18179068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 326
Target Start/End: Complemental strand, 27317533 - 27317500
Alignment:
Q  293 gcctgtttggattaacttatttgagcttatctac 326  Q
    ||||||||||||| ||||||||||||||||||||    
T  27317533 gcctgtttggattgacttatttgagcttatctac 27317500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 28810363 - 28810400
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatcta 325  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  28810363 taagggcctgtttggattgacttatttgagcttctcta 28810400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 2964722 - 2964758
Alignment:
Q  290 agggcctgtttggattaacttatttgagcttatctac 326  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  2964722 agggcatgtttggattaacttatttgaacttatctac 2964758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 4607082 - 4607046
Alignment:
Q  290 agggcctgtttggattaacttatttgagcttatctac 326  Q
    ||||||||||||||||  |||||||||||||||||||    
T  4607082 agggcctgtttggattggcttatttgagcttatctac 4607046  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 6772446 - 6772482
Alignment:
Q  290 agggcctgtttggattaacttatttgagcttatctac 326  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  6772446 agggcatgtttggattgacttatttgagcttatctac 6772482  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 33931481 - 33931525
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||| |||| |||||||||||||||||||||| ||| ||||||    
T  33931481 taagggtctgtctggattaacttatttgagcttacctaatagcat 33931525  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 10199319 - 10199359
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatctacta 328  Q
    |||||||||| ||||||| ||||||||||||||||||||||    
T  10199319 taagggcctggttggattgacttatttgagcttatctacta 10199359  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 327
Target Start/End: Complemental strand, 2295350 - 2295311
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatctact 327  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  2295350 taagggcctgtttggattggcttatttgagcttatctact 2295311  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 296 - 331
Target Start/End: Original strand, 3319865 - 3319900
Alignment:
Q  296 tgtttggattaacttatttgagcttatctactagca 331  Q
    |||||||||| |||||||||||||||||||||||||    
T  3319865 tgtttggattgacttatttgagcttatctactagca 3319900  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 325
Target Start/End: Complemental strand, 37431888 - 37431858
Alignment:
Q  295 ctgtttggattaacttatttgagcttatcta 325  Q
    |||||||||||||||||||||||||||||||    
T  37431888 ctgtttggattaacttatttgagcttatcta 37431858  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 325
Target Start/End: Complemental strand, 52014039 - 52014009
Alignment:
Q  295 ctgtttggattaacttatttgagcttatcta 325  Q
    |||||||||||||||||||||||||||||||    
T  52014039 ctgtttggattaacttatttgagcttatcta 52014009  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 2832120 - 2832087
Alignment:
Q  299 ttggattaacttatttgagcttatctactagcat 332  Q
    |||||||| |||||||||||||||||||||||||    
T  2832120 ttggattagcttatttgagcttatctactagcat 2832087  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 24460314 - 24460351
Alignment:
Q  290 agggcctgtttggattaacttatttgagcttatctact 327  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  24460314 agggcctgtttggattgacttatttgaacttatctact 24460351  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 30013997 - 30014034
Alignment:
Q  295 ctgtttggattaacttatttgagcttatctactagcat 332  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  30013997 ctgtttggattgacttatttgagtttatctactagcat 30014034  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 1565064 - 1565100
Alignment:
Q  295 ctgtttggattaacttatttgagcttatctactagca 331  Q
    |||||||||||||||| |||||| |||||||||||||    
T  1565064 ctgtttggattaacttttttgagattatctactagca 1565100  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 15477712 - 15477668
Alignment:
Q  288 taagggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    ||||||||||||||||||  |||||| ||||||||||||| ||||    
T  15477712 taagggcctgtttggattggcttattagagcttatctacttgcat 15477668  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 29045852 - 29045888
Alignment:
Q  296 tgtttggattaacttatttgagcttatctactagcat 332  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  29045852 tgtttggattgacttatttgagtttatctactagcat 29045888  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 36523201 - 36523233
Alignment:
Q  290 agggcctgtttggattaacttatttgagcttat 322  Q
    ||||||||||||||||||||||||| |||||||    
T  36523201 agggcctgtttggattaacttatttaagcttat 36523233  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 40303994 - 40304034
Alignment:
Q  292 ggcctgtttggattaacttatttgagcttatctactagcat 332  Q
    ||||||||||||||||||||||| || ||||||||| ||||    
T  40303994 ggcctgtttggattaacttatttcagattatctactggcat 40304034  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 328
Target Start/End: Original strand, 50644174 - 50644206
Alignment:
Q  296 tgtttggattaacttatttgagcttatctacta 328  Q
    |||||||||| ||||||||||||||||||||||    
T  50644174 tgtttggattgacttatttgagcttatctacta 50644206  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 159887 - 159924
Alignment:
Q  291 gggcctgtttggattaacttatttgagcttatctacta 328  Q
    |||||||||||||||  |||||||||||||||||||||    
T  159887 gggcctgtttggattggcttatttgagcttatctacta 159924  T

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