View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1811_low_1 (Length: 382)

Name: NF1811_low_1
Description: NF1811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1811_low_1
NF1811_low_1
[»] chr8 (22 HSPs)
chr8 (37-221)||(8645364-8645548)
chr8 (222-361)||(4402196-4402335)
chr8 (221-361)||(35347664-35347804)
chr8 (222-303)||(26847688-26847769)
chr8 (221-270)||(26847096-26847145)
chr8 (227-303)||(36180692-36180768)
chr8 (220-266)||(42094007-42094053)
chr8 (222-303)||(36182088-36182169)
chr8 (221-269)||(22632969-22633017)
chr8 (221-280)||(9929199-9929258)
chr8 (222-269)||(16911047-16911094)
chr8 (220-303)||(42663965-42664047)
chr8 (220-266)||(202575-202621)
chr8 (220-266)||(317412-317458)
chr8 (223-269)||(22632323-22632369)
chr8 (222-271)||(31713867-31713916)
chr8 (222-270)||(5434032-5434080)
chr8 (222-269)||(9277196-9277243)
chr8 (222-264)||(12644063-12644105)
chr8 (220-266)||(42094748-42094794)
chr8 (237-299)||(42664771-42664833)
chr8 (222-270)||(36403025-36403073)
[»] chr2 (16 HSPs)
chr2 (221-371)||(9157014-9157164)
chr2 (221-361)||(10173935-10174075)
chr2 (221-323)||(20606868-20606970)
chr2 (221-266)||(127739-127784)
chr2 (221-268)||(6873521-6873568)
chr2 (221-323)||(40584316-40584418)
chr2 (220-261)||(29388957-29388998)
chr2 (222-269)||(7754968-7755015)
chr2 (214-264)||(7754004-7754054)
chr2 (222-264)||(18537499-18537541)
chr2 (227-261)||(44297423-44297457)
chr2 (222-258)||(127033-127069)
chr2 (223-271)||(34595933-34595981)
chr2 (222-270)||(44296860-44296908)
chr2 (222-266)||(44986812-44986856)
chr2 (222-266)||(44987543-44987587)
[»] chr4 (31 HSPs)
chr4 (219-303)||(14527543-14527627)
chr4 (222-303)||(6056966-6057047)
chr4 (221-303)||(26354199-26354281)
chr4 (222-303)||(51387092-51387173)
chr4 (222-269)||(24666129-24666176)
chr4 (222-270)||(51386456-51386504)
chr4 (222-261)||(21527034-21527073)
chr4 (226-264)||(26393404-26393442)
chr4 (221-259)||(34941501-34941539)
chr4 (221-282)||(26764285-26764346)
chr4 (222-303)||(45393981-45394062)
chr4 (222-270)||(13924793-13924841)
chr4 (226-270)||(18363653-18363697)
chr4 (223-271)||(20143280-20143328)
chr4 (221-273)||(34450814-34450866)
chr4 (222-266)||(34451441-34451485)
chr4 (226-270)||(36599231-36599275)
chr4 (220-303)||(32138805-32138887)
chr4 (226-261)||(36253491-36253526)
chr4 (222-261)||(42792775-42792814)
chr4 (222-264)||(47157385-47157427)
chr4 (222-264)||(52129421-52129463)
chr4 (224-270)||(53778415-53778461)
chr4 (222-263)||(21837389-21837430)
chr4 (220-257)||(24666865-24666902)
chr4 (227-264)||(47156638-47156675)
chr4 (221-269)||(18362934-18362982)
chr4 (222-258)||(25055109-25055145)
chr4 (221-269)||(36599944-36599992)
chr4 (224-272)||(38519185-38519233)
chr4 (227-303)||(42793496-42793572)
[»] chr7 (36 HSPs)
chr7 (222-323)||(30581213-30581314)
chr7 (222-303)||(42818520-42818601)
chr7 (227-271)||(36611556-36611600)
chr7 (231-303)||(36611705-36611777)
chr7 (222-273)||(3314955-3315006)
chr7 (233-303)||(17114813-17114883)
chr7 (222-279)||(17114145-17114202)
chr7 (227-280)||(37783471-37783524)
chr7 (222-270)||(41965777-41965825)
chr7 (221-264)||(46491694-46491737)
chr7 (222-264)||(767136-767178)
chr7 (221-270)||(24874578-24874627)
chr7 (222-270)||(767966-768014)
chr7 (220-264)||(1512566-1512610)
chr7 (221-269)||(18569020-18569068)
chr7 (221-269)||(28007156-28007204)
chr7 (221-273)||(34808986-34809038)
chr7 (226-269)||(1511851-1511894)
chr7 (223-266)||(10590299-10590342)
chr7 (222-269)||(18652891-18652938)
chr7 (222-269)||(28007814-28007861)
chr7 (221-272)||(35892301-35892352)
chr7 (222-269)||(36611495-36611542)
chr7 (224-270)||(44876934-44876980)
chr7 (221-266)||(2403445-2403490)
chr7 (222-263)||(3315470-3315511)
chr7 (221-258)||(41965111-41965148)
chr7 (228-264)||(7329074-7329110)
chr7 (221-265)||(18568366-18568410)
chr7 (221-265)||(18633567-18633611)
chr7 (221-265)||(18646279-18646323)
chr7 (221-265)||(18648864-18648908)
chr7 (221-269)||(41358972-41359020)
chr7 (221-273)||(42817797-42817849)
chr7 (221-269)||(44120357-44120405)
chr7 (220-260)||(46491008-46491048)
[»] chr1 (18 HSPs)
chr1 (219-269)||(24848427-24848477)
chr1 (222-269)||(24847783-24847830)
chr1 (224-276)||(1099893-1099945)
chr1 (222-266)||(16449555-16449599)
chr1 (222-266)||(16459129-16459173)
chr1 (221-269)||(26240113-26240161)
chr1 (221-269)||(26240872-26240920)
chr1 (220-302)||(2261512-2261593)
chr1 (222-302)||(27746127-27746206)
chr1 (220-266)||(39682317-39682363)
chr1 (222-270)||(12449312-12449360)
chr1 (226-270)||(14166907-14166951)
chr1 (221-261)||(27745555-27745595)
chr1 (223-273)||(6942191-6942241)
chr1 (222-264)||(31109239-31109281)
chr1 (222-264)||(31116690-31116732)
chr1 (226-263)||(2260857-2260894)
chr1 (221-270)||(43552111-43552160)
[»] chr3 (35 HSPs)
chr3 (223-272)||(54308454-54308503)
chr3 (222-269)||(4706957-4707004)
chr3 (223-303)||(9830573-9830652)
chr3 (222-269)||(20807937-20807984)
chr3 (222-269)||(49350271-49350318)
chr3 (222-271)||(15287567-15287616)
chr3 (221-266)||(46883763-46883808)
chr3 (222-266)||(47571196-47571240)
chr3 (222-266)||(49349676-49349720)
chr3 (222-269)||(20808608-20808655)
chr3 (226-269)||(33762689-33762732)
chr3 (222-264)||(33761970-33762012)
chr3 (222-271)||(18745369-18745418)
chr3 (222-271)||(24515012-24515061)
chr3 (224-269)||(47677523-47677568)
chr3 (224-269)||(48626115-48626160)
chr3 (221-266)||(53344745-53344790)
chr3 (224-264)||(38557237-38557277)
chr3 (222-266)||(47571943-47571987)
chr3 (222-265)||(53343861-53343904)
chr3 (224-266)||(2226704-2226746)
chr3 (222-272)||(3584005-3584055)
chr3 (222-264)||(4706277-4706319)
chr3 (221-303)||(20776008-20776089)
chr3 (222-271)||(9831261-9831310)
chr3 (222-303)||(15288255-15288335)
chr3 (227-264)||(29516555-29516592)
chr3 (221-266)||(47808361-47808406)
chr3 (228-273)||(51920720-51920765)
chr3 (222-270)||(14746041-14746089)
chr3 (220-260)||(16076208-16076248)
chr3 (222-270)||(43453439-43453487)
chr3 (222-270)||(43454161-43454209)
chr3 (221-269)||(52924434-52924482)
chr3 (220-264)||(53346502-53346546)
[»] chr5 (20 HSPs)
chr5 (222-301)||(39937876-39937954)
chr5 (223-303)||(15561411-15561491)
chr5 (222-270)||(23253486-23253534)
chr5 (220-266)||(2029051-2029097)
chr5 (221-273)||(39466884-39466936)
chr5 (227-303)||(39467606-39467682)
chr5 (222-269)||(24565573-24565620)
chr5 (222-269)||(24606609-24606656)
chr5 (222-261)||(27345928-27345967)
chr5 (220-270)||(35524120-35524170)
chr5 (222-264)||(40372166-40372208)
chr5 (222-270)||(23257319-23257367)
chr5 (221-273)||(29594905-29594957)
chr5 (222-269)||(29595595-29595642)
chr5 (221-260)||(39936254-39936293)
chr5 (222-264)||(4082993-4083035)
chr5 (220-270)||(16195129-16195179)
chr5 (220-266)||(33086727-33086773)
chr5 (222-263)||(20476123-20476164)
chr5 (223-263)||(8743108-8743148)
[»] scaffold0627 (1 HSPs)
scaffold0627 (221-303)||(6463-6545)
[»] chr6 (4 HSPs)
chr6 (222-269)||(16718995-16719042)
chr6 (220-270)||(2138475-2138525)
chr6 (221-271)||(13084878-13084928)
chr6 (222-270)||(10966380-10966428)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 37 - 221
Target Start/End: Original strand, 8645364 - 8645548
Alignment:
Q  37 taactatttgtaaaacatcctcacacgtaagtgtatagtttttaaatgcaattaattttgtcttacattaattacatatttgtannnnnnnnatataaat 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||    
T  8645364 taactatttgtaaaacatcctcacacgtaagtgtatagtttttaaatgcaattaattttgtcttacattaattacatatttgtatttttttt-tataaat 8645462  T
Q  137 ttgttcgacatggactttgaaatcattcctctatcctaatgctaaatatttcttctgtttttg-agaaaacttttatataattcaa 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  8645463 ttgttcgacatggactttgaaatcattcctctatcctaatgctaaatatttcttctttttttgaagaaaacttttatataattcaa 8645548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 222 - 361
Target Start/End: Complemental strand, 4402335 - 4402196
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatcgagcctaaagattctatt 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |    
T  4402335 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaacaagagccattagattaatcgagcctaaagattctagt 4402236  T
Q  322 atgcaccgcacataccagatcacatctctcttctttttcc 361  Q
    |||||||| ||| |||||||||||||||||||||||||||    
T  4402235 atgcaccgtacacaccagatcacatctctcttctttttcc 4402196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 221 - 361
Target Start/End: Original strand, 35347664 - 35347804
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatcgagcctaaagattctat 320  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  35347664 aggtggattttaggatgagggttctattaagtcccttaccggtgaaccactttgaacaacaaacaagagttattagattaatcgagcctaaagattctat 35347763  T
Q  321 tatgcaccgcacataccagatcacatctctcttctttttcc 361  Q
    ||||||||| ||| |||||| ||||||||||||||||||||    
T  35347764 tatgcaccgtacacaccagagcacatctctcttctttttcc 35347804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 303
Target Start/End: Complemental strand, 26847769 - 26847688
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatc 303  Q
    ||||||||||||| |||||| || ||||||| |||||||||||||||||| |||| || || ||||||||||||||||||||    
T  26847769 ggtggattctaggatgagggatcaattaagttcctcaccggtgaaccactatgaataataattaagagtcattagattaatc 26847688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 221 - 270
Target Start/End: Original strand, 26847096 - 26847145
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||    
T  26847096 aggtggattctagggtgagggtccaattaagtccctcaccggtgaaccac 26847145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 36180692 - 36180768
Alignment:
Q  227 attctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatc 303  Q
    |||||||||||||||||  |||||||||||||||||||||||||  |||||||  |   ||||||||||||||||||    
T  36180692 attctagggtgagggtttaattaagtccctcaccggtgaaccaccatgaacaattaccgagagtcattagattaatc 36180768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 42094007 - 42094053
Alignment:
Q  220 aaggtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    |||||||||||||||||||||| || |||||||||||||||||||||    
T  42094007 aaggtggattctagggtgagggatcaattaagtccctcaccggtgaa 42094053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 303
Target Start/End: Complemental strand, 36182169 - 36182088
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatc 303  Q
    |||| |||||| || |||||||| |||||||||||||||||||||||||  | |||||  | | ||||||||||||||||||    
T  36182169 ggtgaattctatggcgagggttcaattaagtccctcaccggtgaaccaccataaacaattactgagagtcattagattaatc 36182088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 22633017 - 22632969
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||||||||||||||||| || ||||||||||||||||||| ||||    
T  22633017 aggtggattctagggtgagggatcaattaagtccctcaccggtggacca 22632969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 9929199 - 9929258
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaac 280  Q
    ||||| |||||| |||||||| |||| ||||||||||||||||| ||||||| |||||||    
T  9929199 aggtgaattctaaggtgagggctctactaagtccctcaccggtggaccacttggaacaac 9929258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 16911094 - 16911047
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    |||||||||||||||||||| || ||||||||||||||||||| ||||    
T  16911094 ggtggattctagggtgagggctcaattaagtccctcaccggtgtacca 16911047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 303
Target Start/End: Complemental strand, 42664047 - 42663965
Alignment:
Q  220 aaggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatc 303  Q
    |||||| ||| |||||||||||||| |||||||||||||| |||| |||| | | ||||| || ||||||||||| ||||||||    
T  42664047 aaggtgaattttagggtgagggttcaattaagtccctcactggtggacca-tcttaacaataattaagagtcatttgattaatc 42663965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 202575 - 202621
Alignment:
Q  220 aaggtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||||    
T  202575 aaggtgaattctaggatgagggttcaattaagtccctcaccggtgaa 202621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 317412 - 317458
Alignment:
Q  220 aaggtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||||    
T  317412 aaggtgaattctaggatgagggttcaattaagtccctcaccggtgaa 317458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 22632323 - 22632369
Alignment:
Q  223 gtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||||    
T  22632323 gtggattctagggtgagggatcaattaagtccctcaccggtggacca 22632369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 31713916 - 31713867
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccact 271  Q
    |||||||||||||||||||||||||  |||||||||||| ||| ||||||    
T  31713916 ggtggattctagggtgagggttctaacaagtccctcacccgtggaccact 31713867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 5434032 - 5434080
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    ||||||||||||||||||||| | ||||||||| ||||||||| |||||    
T  5434032 ggtggattctagggtgagggtccaattaagtccttcaccggtggaccac 5434080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 9277196 - 9277243
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    |||||||||||||||||||||||||  |||||||||| ||||| ||||    
T  9277196 ggtggattctagggtgagggttctaacaagtccctcatcggtggacca 9277243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 264
Target Start/End: Complemental strand, 12644105 - 12644063
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtg 264  Q
    ||||| |||||||||||||||||||| |||||||||| |||||    
T  12644105 ggtggtttctagggtgagggttctatcaagtccctcatcggtg 12644063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 42094794 - 42094748
Alignment:
Q  220 aaggtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    |||||| ||||||||||||||| || |||||||||||||||| ||||    
T  42094794 aaggtgaattctagggtgagggatcaattaagtccctcaccgatgaa 42094748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 42664833 - 42664771
Alignment:
Q  237 gagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagatt 299  Q
    |||||||||||||||||||||  ||||| ||||||| ||||||| |   ||||||||||||||    
T  42664833 gagggttctattaagtccctcgtcggtggaccacttcgaacaaccatcgagagtcattagatt 42664771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 36403073 - 36403025
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    |||||||||||| |||||||| | |||| |||||||||||||| |||||    
T  36403073 ggtggattctagagtgagggtccaattaggtccctcaccggtggaccac 36403025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 221 - 371
Target Start/End: Original strand, 9157014 - 9157164
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatcgagcctaaagattctat 320  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || ||| |||||||||||||||| ||||||||||||    
T  9157014 aggtggattctagggcgagggttctattaaatccctcaccggtgaaccactttgaacaacaaacaaaagttattagattaatcgagcttaaagattctat 9157113  T
Q  321 tatgcaccgcacataccagatcacatctctcttctttttccacctaccttt 371  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9157114 tatgcaccgcacataccagatcacatctctcttctttttcctcctaccttt 9157164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 221 - 361
Target Start/End: Original strand, 10173935 - 10174075
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatcgagcctaaagattctat 320  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| |||  ||| |||  ||    
T  10173935 aggtggattctagggtgagggttctgttaagtccctcaccggtgaaccaccttgaacaacaaacaagagccattagattaatcaagctcaaatatttcat 10174034  T
Q  321 tatgcaccgcacataccagatcacatctctcttctttttcc 361  Q
     |||||||| | |||| |||| ||| |||||||||||||||    
T  10174035 catgcaccgtatatactagattacacctctcttctttttcc 10174075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 221 - 323
Target Start/End: Complemental strand, 20606970 - 20606868
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatcgagcctaaagattctat 320  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||| | ||||| || |||||| |||||||| |||| ||  || |||||||||    
T  20606970 aggtgaattctagggtgagggttcaattaagtccctcaccggtgaaccactataaacaataattaagagccattagatcaatcaagagtatagattctat 20606871  T
Q  321 tat 323  Q
    |||    
T  20606870 tat 20606868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 127784 - 127739
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||    
T  127784 aggtggattctagggtgagggttcaattaagtccttcaccggtgaa 127739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 6873521 - 6873568
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaacc 268  Q
    ||||||||| |||||||||||||| ||||||||||| |||||||||||    
T  6873521 aggtggattttagggtgagggttcaattaagtcccttaccggtgaacc 6873568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 323
Target Start/End: Complemental strand, 40584418 - 40584316
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatcgagcctaaagattctat 320  Q
    ||||| ||| |||||||||||||| | || ||||||||||||||||||||  | ||||| || | |||| |||||||| |||| |||  | |||||||||    
T  40584418 aggtgaattatagggtgagggttcaactaggtccctcaccggtgaaccaccgttaacaataattgagagccattagatcaatcaagcgcatagattctat 40584319  T
Q  321 tat 323  Q
    |||    
T  40584318 tat 40584316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 29388998 - 29388957
Alignment:
Q  220 aaggtggattctagggtgagggttctattaagtccctcaccg 261  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  29388998 aaggtggattttagggtgagggctctattaagtccctcaccg 29388957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 7755015 - 7754968
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    |||||||||||||||||||| || ||||||||| ||||||||| ||||    
T  7755015 ggtggattctagggtgagggatcaattaagtccttcaccggtggacca 7754968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 7754004 - 7754054
Alignment:
Q  214 taattcaaggtggattctagggtgagggttctattaagtccctcaccggtg 264  Q
    ||||||| ||||||||||||||||||||| | |||| ||||||| ||||||    
T  7754004 taattcatggtggattctagggtgagggtccaattaggtccctccccggtg 7754054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 264
Target Start/End: Complemental strand, 18537541 - 18537499
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtg 264  Q
    ||||||||||| | ||||||||| |||||||||||||||||||    
T  18537541 ggtggattctatgatgagggttcaattaagtccctcaccggtg 18537499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 261
Target Start/End: Complemental strand, 44297457 - 44297423
Alignment:
Q  227 attctagggtgagggttctattaagtccctcaccg 261  Q
    |||||||||||||||||| ||||||||||||||||    
T  44297457 attctagggtgagggttcaattaagtccctcaccg 44297423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 127033 - 127069
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctca 258  Q
    ||||||||||||||||||||||| | |||||||||||    
T  127033 ggtggattctagggtgagggttcaactaagtccctca 127069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 34595981 - 34595933
Alignment:
Q  223 gtggattctagggtgagggttctattaagtccctcaccggtgaaccact 271  Q
    ||||||||||| |||||||||| | ||| ||||||||||||| ||||||    
T  34595981 gtggattctagagtgagggttcaactaaatccctcaccggtgtaccact 34595933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 44296860 - 44296908
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    |||| |||||||||||||||| | |||||||||||||| |||| |||||    
T  44296860 ggtgaattctagggtgagggtccaattaagtccctcactggtggaccac 44296908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 44986812 - 44986856
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    |||| ||||||||||||||| || ||||||||||||| |||||||    
T  44986812 ggtgaattctagggtgagggatcaattaagtccctcatcggtgaa 44986856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 44987587 - 44987543
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    |||||||||||||||||||| || |||||||| ||||| ||||||    
T  44987587 ggtggattctagggtgagggatcaattaagtctctcactggtgaa 44987543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 14527627 - 14527543
Alignment:
Q  219 caaggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatc 303  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| || || ||||||||||||||||||||    
T  14527627 caaggtggattctagggtgagggatcaattaagtccctcaccggtgaaccactatgaataataattaagagtcattagattaatc 14527543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 303
Target Start/End: Complemental strand, 6057047 - 6056966
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatc 303  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| | |||||  ||||| |||||||    
T  6057047 ggtggattctagggtgagggttctactaagtccctcaccggtggaccacttcgaacaaccattaagaaccattaaattaatc 6056966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 303
Target Start/End: Complemental strand, 26354281 - 26354199
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatc 303  Q
    |||||| ||||||||||||||||| |||||||||||||| |||| |||||  |||||||  | |||||||||||| |||||||    
T  26354281 aggtgggttctagggtgagggttcaattaagtccctcacaggtggaccaccatgaacaattattaagagtcattaaattaatc 26354199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 303
Target Start/End: Complemental strand, 51387173 - 51387092
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatc 303  Q
    |||||||| ||||||||||| || |||| |||||||||||||||||||||  ||| || || ||| ||||||||||||||||    
T  51387173 ggtggattatagggtgagggatcaattacgtccctcaccggtgaaccactacgaataataattaaaagtcattagattaatc 51387092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 24666129 - 24666176
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||    
T  24666129 ggtggattctagggtgagggatcaattaagtccctcaccggtgaacca 24666176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 51386456 - 51386504
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    |||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  51386456 ggtggattttagggtgagggttcaattaagtccctcaccagtgaaccac 51386504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 261
Target Start/End: Complemental strand, 21527073 - 21527034
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccg 261  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  21527073 ggtggattctagggtgagggctctattaagtccctcaccg 21527034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 26393442 - 26393404
Alignment:
Q  226 gattctagggtgagggttctattaagtccctcaccggtg 264  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  26393442 gattctagggtgagggctctattaagtccctcaccggtg 26393404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 259
Target Start/End: Original strand, 34941501 - 34941539
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcac 259  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  34941501 aggtggattctagggtgagggttcaattaagtccctcac 34941539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 26764346 - 26764285
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaa 282  Q
    ||||| |||||| |||||||||||||| || ||||||||||||| |||||| | ||||||||    
T  26764346 aggtgaattctaaggtgagggttctatcaaatccctcaccggtggaccactataaacaacaa 26764285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 303
Target Start/End: Original strand, 45393981 - 45394062
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatc 303  Q
    |||| ||||||| |||||||||| |||||||| || |||||||||||||| | ||||| || | |||| |||||||| ||||    
T  45393981 ggtgaattctagagtgagggttcaattaagtctcttaccggtgaaccactattaacaataattgagagccattagatcaatc 45394062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 13924793 - 13924841
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    |||||||||||||||||||| || ||||| ||||||||||||| |||||    
T  13924793 ggtggattctagggtgagggctcaattaaatccctcaccggtggaccac 13924841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 18363697 - 18363653
Alignment:
Q  226 gattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    ||||||||||||||||||| ||||||| ||||||||||| |||||    
T  18363697 gattctagggtgagggttcaattaagttcctcaccggtggaccac 18363653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 20143280 - 20143328
Alignment:
Q  223 gtggattctagggtgagggttctattaagtccctcaccggtgaaccact 271  Q
    ||||||||||||||||||| || | ||||||||||||||||| ||||||    
T  20143280 gtggattctagggtgagggctcaactaagtccctcaccggtgtaccact 20143328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 34450814 - 34450866
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaaccacttt 273  Q
    ||||| ||||||||||||||| || ||||||||||||||||||| | ||||||    
T  34450814 aggtgaattctagggtgagggatcaattaagtccctcaccggtggagcacttt 34450866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 34451485 - 34451441
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    |||||||||||||||||||| || ||||||| |||||||||||||    
T  34451485 ggtggattctagggtgagggatcaattaagtacctcaccggtgaa 34451441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 36599231 - 36599275
Alignment:
Q  226 gattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    ||||||||||||||||||| ||||||| ||||||||||| |||||    
T  36599231 gattctagggtgagggttcaattaagttcctcaccggtggaccac 36599275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 303
Target Start/End: Complemental strand, 32138887 - 32138805
Alignment:
Q  220 aaggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatc 303  Q
    ||||||||||||| |||||||| ||||| || || |||||||||| |||||| |  ||||||| |||||  |||||||||||||    
T  32138887 aaggtggattctaaggtgagggctctatcaaatcactcaccggtggaccactatagacaacaattaaga-ccattagattaatc 32138805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 261
Target Start/End: Original strand, 36253491 - 36253526
Alignment:
Q  226 gattctagggtgagggttctattaagtccctcaccg 261  Q
    ||||||| ||||||||||||||||||||||||||||    
T  36253491 gattctaaggtgagggttctattaagtccctcaccg 36253526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 261
Target Start/End: Original strand, 42792775 - 42792814
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccg 261  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  42792775 ggtggattctagggtgagggtccaattaagtccctcaccg 42792814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 264
Target Start/End: Complemental strand, 47157427 - 47157385
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtg 264  Q
    |||| |||||||||||||||||| ||||| |||||||||||||    
T  47157427 ggtgaattctagggtgagggttcaattaaatccctcaccggtg 47157385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 52129421 - 52129463
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtg 264  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||    
T  52129421 ggtggattctaaggtgagggttcaattaagtccctcactggtg 52129463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 53778461 - 53778415
Alignment:
Q  224 tggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    ||||||||||||||||||| |  |||||||||||||||||| |||||    
T  53778461 tggattctagggtgagggtccatttaagtccctcaccggtggaccac 53778415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 21837389 - 21837430
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggt 263  Q
    ||||||||||||||||||||| | | ||||||||||||||||    
T  21837389 ggtggattctagggtgagggtccaactaagtccctcaccggt 21837430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 24666902 - 24666865
Alignment:
Q  220 aaggtggattctagggtgagggttctattaagtccctc 257  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  24666902 aaggtggattatagggtgagggttcaattaagtccctc 24666865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 264
Target Start/End: Original strand, 47156638 - 47156675
Alignment:
Q  227 attctagggtgagggttctattaagtccctcaccggtg 264  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  47156638 attctagggtgagggttcaattaagtccctcatcggtg 47156675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 18362934 - 18362982
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||||||||||||||||| || ||||||||  ||| ||||||||||    
T  18362934 aggtggattctagggtgagggatcaattaagtctttcatcggtgaacca 18362982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 25055109 - 25055145
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctca 258  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  25055109 ggtggattctagggtgagggttcaattaagttcctca 25055145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 36599992 - 36599944
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||||||||||||||||| || ||||||||  ||| ||||||||||    
T  36599992 aggtggattctagggtgagggatcaattaagtctttcatcggtgaacca 36599944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 38519233 - 38519185
Alignment:
Q  224 tggattctagggtgagggttctattaagtccctcaccggtgaaccactt 272  Q
    ||||||||||||||| ||  | ||||||||||||||||||| |||||||    
T  38519233 tggattctagggtgaaggagcaattaagtccctcaccggtgtaccactt 38519185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 303
Target Start/End: Complemental strand, 42793572 - 42793496
Alignment:
Q  227 attctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatc 303  Q
    |||||||| ||||| ||| |||||||||||||||| || | |||||  || |||||||||||   ||||||||||||    
T  42793572 attctaggatgaggattcaattaagtccctcaccgatggatcacttataataacaaataagaactattagattaatc 42793496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 323
Target Start/End: Complemental strand, 30581314 - 30581213
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatcgagcctaaagattctatt 321  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||||||| | ||||| || |||||| |||||||| |||| ||  || ||||||||||    
T  30581314 ggtgaattctagggtgagggttcaattaagtccctcaccagtgaaccactataaacaataattaagagccattagatcaatcaagagtatagattctatt 30581215  T
Q  322 at 323  Q
    ||    
T  30581214 at 30581213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 303
Target Start/End: Complemental strand, 42818601 - 42818520
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatc 303  Q
    |||| |||||||||||||||||| ||||||||||||||||||| | |||||  || ||||||||||| ||||||||||||||    
T  42818601 ggtgaattctagggtgagggttcaattaagtccctcaccggtggatcacttataataacaaataagaatcattagattaatc 42818520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 36611556 - 36611600
Alignment:
Q  227 attctagggtgagggttctattaagtccctcaccggtgaaccact 271  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  36611556 attctagggtgagggttcaattaagtccctcaccggtgaaccact 36611600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 36611777 - 36611705
Alignment:
Q  231 tagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatc 303  Q
    |||||||||||||| ||||||||||||| | |||||||||| | |||||||| ||||| || |||||||||||    
T  36611777 tagggtgagggttcaattaagtccctcatcagtgaaccactgtaaacaacaattaagaatcgttagattaatc 36611705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 3314955 - 3315006
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccacttt 273  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||    
T  3314955 ggtggattctacggtgagggttcaattaagtccctcaccggtgtaccacttt 3315006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 17114883 - 17114813
Alignment:
Q  233 gggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatc 303  Q
    |||||||||||| ||||||| |||||||||||||||||  |||||||  | | ||||||||||||||||||    
T  17114883 gggtgagggttcaattaagttcctcaccggtgaaccaccatgaacaattactgagagtcattagattaatc 17114813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 279
Target Start/End: Original strand, 17114145 - 17114202
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaa 279  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||| |||  |||||||    
T  17114145 ggtggattctagggtgagggttcaattaagtccctcatcggtgaatcaccatgaacaa 17114202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 37783524 - 37783471
Alignment:
Q  227 attctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaac 280  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||||| |||||||    
T  37783524 attctagggtgagggctctactaagtccctcaccggtggaccacttggaacaac 37783471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 41965825 - 41965777
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    ||||||||||||||||||||| | ||||||||||||||||||| |||||    
T  41965825 ggtggattctagggtgagggtccaattaagtccctcaccggtggaccac 41965777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 46491737 - 46491694
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtg 264  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  46491737 aggtggattctagggtgagggttcaactaagtccctcaccggtg 46491694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 767136 - 767178
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtg 264  Q
    ||||||||||||||||||||| | |||||||||||||||||||    
T  767136 ggtggattctagggtgagggtccaattaagtccctcaccggtg 767178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 24874627 - 24874578
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    |||||||||||||||||||||||| |||| |||||||| ||||| |||||    
T  24874627 aggtggattctagggtgagggttcaattaggtccctcatcggtggaccac 24874578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 768014 - 767966
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    |||||||| |||||||||||| | ||||||||||||||||||| |||||    
T  768014 ggtggattttagggtgagggtccaattaagtccctcaccggtggaccac 767966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 1512610 - 1512566
Alignment:
Q  220 aaggtggattctagggtgagggttctattaagtccctcaccggtg 264  Q
    |||||||||||||||||||| | |||||||||| |||||||||||    
T  1512610 aaggtggattctagggtgagagctctattaagttcctcaccggtg 1512566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 18569068 - 18569020
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    |||||||||||||||||| ||| ||||||| ||||||||||||| ||||    
T  18569068 aggtggattctagggtgaaggtcctattaaatccctcaccggtggacca 18569020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 28007156 - 28007204
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    |||||||||||||||||||||  | ||||||||||||||||||| ||||    
T  28007156 aggtggattctagggtgagggagcaattaagtccctcaccggtggacca 28007204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 34809038 - 34808986
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaaccacttt 273  Q
    ||||||||||||| |||||||||| ||||||||| ||| ||||| ||||||||    
T  34809038 aggtggattctagagtgagggttcaattaagtccttcatcggtgtaccacttt 34808986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 1511851 - 1511894
Alignment:
Q  226 gattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||| ||||| ||||||||||||||||||||||||| ||||    
T  1511851 gattctaaggtgatggttctattaagtccctcaccggtgtacca 1511894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 10590299 - 10590342
Alignment:
Q  223 gtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    ||||||||||||||||| |||| ||||||||||||| |||||||    
T  10590299 gtggattctagggtgagagttcaattaagtccctcatcggtgaa 10590342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 18652891 - 18652938
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||| ||||    
T  18652891 ggtggattctagggtgaaggtcctattaaatccctcaccggtggacca 18652938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 28007861 - 28007814
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||||||||||||| ||  ||||||||||||||||||||| ||||    
T  28007861 ggtggattctagggtgatggagctattaagtccctcaccggtggacca 28007814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 35892352 - 35892301
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaaccactt 272  Q
    |||||||||||||||||||||  | ||||| ||||||||||||| |||||||    
T  35892352 aggtggattctagggtgagggagcaattaaatccctcaccggtgtaccactt 35892301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 36611542 - 36611495
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||||||||||||||||||| ||||| || |||||||||| ||||    
T  36611542 ggtggattctagggtgagggttcaattaaatctctcaccggtggacca 36611495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 44876980 - 44876934
Alignment:
Q  224 tggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    |||||||||||||||||| || |||||||||||||||| || |||||    
T  44876980 tggattctagggtgagggatcaattaagtccctcaccgatggaccac 44876934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 2403490 - 2403445
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    ||||| |||||||| ||||||||| | |||||||||||||||||||    
T  2403490 aggtgaattctaggatgagggttcaactaagtccctcaccggtgaa 2403445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 3315511 - 3315470
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggt 263  Q
    ||||||||||| |||||||| || ||||||||||||||||||    
T  3315511 ggtggattctaaggtgagggctcaattaagtccctcaccggt 3315470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 41965111 - 41965148
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctca 258  Q
    |||||||||||||||||||||| | |||||||||||||    
T  41965111 aggtggattctagggtgagggtccaattaagtccctca 41965148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 7329110 - 7329074
Alignment:
Q  228 ttctagggtgagggttctattaagtccctcaccggtg 264  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  7329110 ttctagggtgagggttcaattaagtccctcactggtg 7329074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 18568366 - 18568410
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtga 265  Q
    |||||||||||| |||||||| ||||| ||| |||||||||||||    
T  18568366 aggtggattctaaggtgagggctctatcaagcccctcaccggtga 18568410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 18633611 - 18633567
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtga 265  Q
    |||||||||||| |||||||| ||||| ||| |||||||||||||    
T  18633611 aggtggattctaaggtgagggctctatcaagcccctcaccggtga 18633567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 18646323 - 18646279
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtga 265  Q
    |||||||||||| |||||||| ||||| ||| |||||||||||||    
T  18646323 aggtggattctaaggtgagggctctatcaagcccctcaccggtga 18646279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 18648908 - 18648864
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtga 265  Q
    |||||||||||| |||||||| ||||| ||| |||||||||||||    
T  18648908 aggtggattctaaggtgagggctctatcaagcccctcaccggtga 18648864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 41359020 - 41358972
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||||||||||||||||| || ||||||||| ||||| ||| ||||    
T  41359020 aggtggattctagggtgagggatcaattaagtccatcaccagtggacca 41358972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 42817797 - 42817849
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaaccacttt 273  Q
    ||||| |||||||||||| ||| | ||||||||||||| ||||| ||||||||    
T  42817797 aggtgaattctagggtgatggtccaattaagtccctcatcggtggaccacttt 42817849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 44120357 - 44120405
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    |||||||||||| ||||||||  | ||||||||||||||||||| ||||    
T  44120357 aggtggattctaaggtgagggagcaattaagtccctcaccggtgtacca 44120405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 46491008 - 46491048
Alignment:
Q  220 aaggtggattctagggtgagggttctattaagtccctcacc 260  Q
    |||||||||| |||||||||||||| ||||||||| |||||    
T  46491008 aaggtggattgtagggtgagggttcaattaagtccatcacc 46491048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 24848477 - 24848427
Alignment:
Q  219 caaggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24848477 caaggtggattctagggtgagggttctattaagtccctcaccggtgtacca 24848427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 24847783 - 24847830
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24847783 ggtggattctagggtgagggttctattaagtccctcaccggtgtacca 24847830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 1099893 - 1099945
Alignment:
Q  224 tggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaa 276  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||| ||||    
T  1099893 tggattctagggtgagagttctattaagtccctcaccgatgaaccactctgaa 1099945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 16449555 - 16449599
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  16449555 ggtggattctagggtgagggttcaattaagtccctcaccggtgaa 16449599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 16459129 - 16459173
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  16459129 ggtggattctagggtgagggttcaattaagtccctcaccggtgaa 16459173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 26240113 - 26240161
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||    
T  26240113 aggtggattctagggtgagggatcaattaagtccctcaccggtgaacca 26240161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 26240920 - 26240872
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  26240920 aggtggattctagggtgagggttcaattaagtccctcaccggtggacca 26240872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 302
Target Start/End: Complemental strand, 2261593 - 2261512
Alignment:
Q  220 aaggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaat 302  Q
    |||||| ||| |||||||||||||| |||||| |||||||| |||||||||  |||| ||| |||||||| ||||||||||||    
T  2261593 aaggtgaattttagggtgagggttcaattaagcccctcaccagtgaaccaccatgaataac-aataagagccattagattaat 2261512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 27746206 - 27746127
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaat 302  Q
    |||||||||||| |||||||||| ||||||||||||||| ||| | |||  |||| ||| |||||||| ||||||||||||    
T  27746206 ggtggattctagcgtgagggttcaattaagtccctcaccagtggatcaccgtgaataac-aataagagccattagattaat 27746127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 39682317 - 39682363
Alignment:
Q  220 aaggtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    |||||||||||||||||||||| ||||| |||||| |||||||||||    
T  39682317 aaggtggattctagggtgagggctctatcaagtccttcaccggtgaa 39682363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 12449360 - 12449312
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    |||||||| ||||||||||| || ||||||||||||||||||| |||||    
T  12449360 ggtggattttagggtgagggatcaattaagtccctcaccggtggaccac 12449312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 14166951 - 14166907
Alignment:
Q  226 gattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    |||||||||||||||| || |||||||||||||||||| ||||||    
T  14166951 gattctagggtgagggctcaattaagtccctcaccggtaaaccac 14166907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 27745555 - 27745595
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccg 261  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  27745555 aggtggattctaaggtgagggttcaattaagtccctcaccg 27745595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 6942191 - 6942241
Alignment:
Q  223 gtggattctagggtgagggttctattaagtccctcaccggtgaaccacttt 273  Q
    |||||||||| |||||||| || ||||||||| ||| ||||||||||||||    
T  6942191 gtggattctaaggtgagggatcaattaagtccttcatcggtgaaccacttt 6942241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 31109239 - 31109281
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtg 264  Q
    ||||||||||||||||||||| | |||| ||||||||||||||    
T  31109239 ggtggattctagggtgagggtccaattaggtccctcaccggtg 31109281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 264
Target Start/End: Complemental strand, 31116732 - 31116690
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtg 264  Q
    ||||||||||||||||||||| | |||| ||||||||||||||    
T  31116732 ggtggattctagggtgagggtccaattaggtccctcaccggtg 31116690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 2260857 - 2260894
Alignment:
Q  226 gattctagggtgagggttctattaagtccctcaccggt 263  Q
    ||||||||||||||||||| || |||||||||||||||    
T  2260857 gattctagggtgagggttcaatcaagtccctcaccggt 2260894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 270
Target Start/End: Original strand, 43552111 - 43552160
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    |||||||||||||||||||| | | ||||| | |||||||||||||||||    
T  43552111 aggtggattctagggtgaggatccaattaaattcctcaccggtgaaccac 43552160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 223 - 272
Target Start/End: Original strand, 54308454 - 54308503
Alignment:
Q  223 gtggattctagggtgagggttctattaagtccctcaccggtgaaccactt 272  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  54308454 gtggattctagggtgagggttcaattaagtccctcaccggtgaaccactt 54308503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 4707004 - 4706957
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4707004 ggtggattctagggtgagggttctattaagtccctcaccggtgtacca 4706957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 303
Target Start/End: Original strand, 9830573 - 9830652
Alignment:
Q  223 gtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatc 303  Q
    ||||||||| |||||||||||| ||||||||||||||||||| |||| | | ||||| || ||||||||||| ||||||||    
T  9830573 gtggattctcgggtgagggttcaattaagtccctcaccggtggacca-tcttaacaataattaagagtcatttgattaatc 9830652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 20807937 - 20807984
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  20807937 ggtggattctagggtgagggttcaattaagtccctcaccggtgtacca 20807984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 49350318 - 49350271
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||    
T  49350318 ggtggattctagggtgagggttcaattaagtccctcgccggtgaacca 49350271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 15287567 - 15287616
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccact 271  Q
    ||||||||||||||||||||| | ||||||||||||||||||| ||||||    
T  15287567 ggtggattctagggtgagggtccaattaagtccctcaccggtggaccact 15287616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 46883763 - 46883808
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||    
T  46883763 aggtggcttctagggtgagggctctattaagtccctcaccggtgaa 46883808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 47571196 - 47571240
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    |||||||||||||||||||| || |||||||||||||||||||||    
T  47571196 ggtggattctagggtgagggatcaattaagtccctcaccggtgaa 47571240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 49349676 - 49349720
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    |||||||||||||||||||| || |||||||||||||||||||||    
T  49349676 ggtggattctagggtgagggatcaattaagtccctcaccggtgaa 49349720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 20808655 - 20808608
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||||||||||||||||||| | ||||||||||||||||| ||||    
T  20808655 ggtggattctagggtgagggttcaagtaagtccctcaccggtgtacca 20808608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 33762732 - 33762689
Alignment:
Q  226 gattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||    
T  33762732 gattctaaggtgagggttctattaagtccctcaccggtgtacca 33762689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 33761970 - 33762012
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtg 264  Q
    |||||||||||||||||||| |||||||||| |||||||||||    
T  33761970 ggtggattctagggtgagggctctattaagttcctcaccggtg 33762012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 18745418 - 18745369
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccact 271  Q
    |||| |||||||||||||||||| || |||||||||||||||| ||||||    
T  18745418 ggtgaattctagggtgagggttcaatcaagtccctcaccggtgcaccact 18745369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 24515061 - 24515012
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccact 271  Q
    ||||||||||||||||||||   |||||||||||||||||||| ||||||    
T  24515061 ggtggattctagggtgagggagttattaagtccctcaccggtggaccact 24515012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 47677523 - 47677568
Alignment:
Q  224 tggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||||||| ||||||||| |||||||||||||| |||||||||    
T  47677523 tggattctaggatgagggttcaattaagtccctcactggtgaacca 47677568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 48626160 - 48626115
Alignment:
Q  224 tggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||||    
T  48626160 tggattctagggtgagggttcaattaagtccctctccgatgaacca 48626115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 53344790 - 53344745
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    ||||||||||||||||||||| || || ||||||||||||||||||    
T  53344790 aggtggattctagggtgagggatcaatcaagtccctcaccggtgaa 53344745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 38557277 - 38557237
Alignment:
Q  224 tggattctagggtgagggttctattaagtccctcaccggtg 264  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  38557277 tggattttagggtgagggctctattaagtccctcaccggtg 38557237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 47571987 - 47571943
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    |||| ||||||||||||||| || |||||||||||||||||||||    
T  47571987 ggtgaattctagggtgagggatcaattaagtccctcaccggtgaa 47571943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 265
Target Start/End: Complemental strand, 53343904 - 53343861
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtga 265  Q
    ||||||||||||||||||||||| |  |||||||||||||||||    
T  53343904 ggtggattctagggtgagggttcaaacaagtccctcaccggtga 53343861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 2226746 - 2226704
Alignment:
Q  224 tggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    ||||||||||||||||||||| ||||| |||||||| ||||||    
T  2226746 tggattctagggtgagggttcaattaattccctcacaggtgaa 2226704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 3584005 - 3584055
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccactt 272  Q
    ||||||||||||||||||||  | ||||| ||||||||||||| |||||||    
T  3584005 ggtggattctagggtgagggagcaattaaatccctcaccggtgtaccactt 3584055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 4706277 - 4706319
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtg 264  Q
    |||||||| ||||||||||| |||||||||| |||||||||||    
T  4706277 ggtggattttagggtgagggctctattaagtacctcaccggtg 4706319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 303
Target Start/End: Original strand, 20776008 - 20776089
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatc 303  Q
    ||||||||| |||| |||||| ||||| || |||||||||||   |||||| | |||||||| ||||| ||||||||||||||    
T  20776008 aggtggattataggatgagggctctatcaaatccctcaccggcagaccactataaacaacaattaaga-tcattagattaatc 20776089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 9831310 - 9831261
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccact 271  Q
    |||||||||| |||||||||| | |||||||||||||| |||| ||||||    
T  9831310 ggtggattctggggtgagggtccaattaagtccctcactggtggaccact 9831261  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 303
Target Start/End: Complemental strand, 15288335 - 15288255
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatc 303  Q
    |||| |||||||||||||| ||| ||||||| |||||||| ||||||| | | ||| | || ||||||||||| ||||||||    
T  15288335 ggtgaattctagggtgaggattcaattaagttcctcaccgatgaacca-tcttaactataattaagagtcatttgattaatc 15288255  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 29516592 - 29516555
Alignment:
Q  227 attctagggtgagggttctattaagtccctcaccggtg 264  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  29516592 attctacggtgagggttcaattaagtccctcaccggtg 29516555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 47808361 - 47808406
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    ||||||||||||||||||||| || || ||||||||||||| ||||    
T  47808361 aggtggattctagggtgagggatcaatcaagtccctcaccgatgaa 47808406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 51920720 - 51920765
Alignment:
Q  228 ttctagggtgagggttctattaagtccctcaccggtgaaccacttt 273  Q
    ||||||||||||||| | |||||||||||||||| || ||||||||    
T  51920720 ttctagggtgagggtccaattaagtccctcaccgatggaccacttt 51920765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 14746041 - 14746089
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    ||||||||||||||||||||| | ||||| |||||| |||||| |||||    
T  14746041 ggtggattctagggtgagggtccaattaaatccctccccggtggaccac 14746089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 16076208 - 16076248
Alignment:
Q  220 aaggtggattctagggtgagggttctattaagtccctcacc 260  Q
    ||||||||||||||||||||||| | |||| ||||||||||    
T  16076208 aaggtggattctagggtgagggtccaattaggtccctcacc 16076248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 43453439 - 43453487
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    ||||||||||||||||||||| | ||||| |||||||||| || |||||    
T  43453439 ggtggattctagggtgagggtccaattaaatccctcaccgctggaccac 43453487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 43454209 - 43454161
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    ||||||||||||||||||||| | |||| |||||||||| ||| |||||    
T  43454209 ggtggattctagggtgagggtccaattaggtccctcacctgtggaccac 43454161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 52924482 - 52924434
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    |||||||||||| ||||||||  | ||||||||||||||||||| ||||    
T  52924482 aggtggattctaaggtgagggagcaattaagtccctcaccggtgcacca 52924434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 53346546 - 53346502
Alignment:
Q  220 aaggtggattctagggtgagggttctattaagtccctcaccggtg 264  Q
    |||||| ||||||  |||||||||| |||||||||||||||||||    
T  53346546 aaggtgaattctacagtgagggttcaattaagtccctcaccggtg 53346502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 39937954 - 39937876
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaa 301  Q
    |||||||||||||||||||||||  |||||||||||||||||| |||||  |||| ||| |||||||| |||||||||||    
T  39937954 ggtggattctagggtgagggttcagttaagtccctcaccggtggaccaccatgaataac-aataagagccattagattaa 39937876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 303
Target Start/End: Original strand, 15561411 - 15561491
Alignment:
Q  223 gtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatc 303  Q
    ||||||||||||||||||| |||| ||||||||||||||||| |||| || ||||||| | | |||  |||||||||||||    
T  15561411 gtggattctagggtgagggctctactaagtccctcaccggtggaccatttcgaacaaccattgagaaccattagattaatc 15561491  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 23253534 - 23253486
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||    
T  23253534 ggtggattctagggtgagggtccaattaagtccctcaccggtgaaccac 23253486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 2029097 - 2029051
Alignment:
Q  220 aaggtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    |||||||||||||||||||||| || |||||||||||||||||||||    
T  2029097 aaggtggattctagggtgagggctcaattaagtccctcaccggtgaa 2029051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 39466884 - 39466936
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaaccacttt 273  Q
    ||||| |||||||||||||||| | ||||||||||||||||||| ||||||||    
T  39466884 aggtgaattctagggtgagggtccaattaagtccctcaccggtggaccacttt 39466936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 227 - 303
Target Start/End: Complemental strand, 39467682 - 39467606
Alignment:
Q  227 attctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatc 303  Q
    |||||||||||||||||  ||||||||||||| ||||| | |||||  || |||||||||||  |||||||||||||    
T  39467682 attctagggtgagggtttaattaagtccctcatcggtggatcacttataataacaaataagaaccattagattaatc 39467606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 24565573 - 24565620
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  24565573 ggtggattctagggtgagggttcaattaaatccctcaccggtggacca 24565620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 24606609 - 24606656
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  24606609 ggtggattctagggtgagggttcaattaaatccctcaccggtggacca 24606656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 261
Target Start/End: Complemental strand, 27345967 - 27345928
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccg 261  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  27345967 ggtggattctagggtgagggttcaattaagtccctcaccg 27345928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 35524120 - 35524170
Alignment:
Q  220 aaggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    ||||||||||||||| |||| |||| ||||||||||||||||||| |||||    
T  35524120 aaggtggattctaggatgagagttcaattaagtccctcaccggtggaccac 35524170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 264
Target Start/End: Complemental strand, 40372208 - 40372166
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtg 264  Q
    ||||||||||||||||||||||| ||||||| |||||||||||    
T  40372208 ggtggattctagggtgagggttcaattaagttcctcaccggtg 40372166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 23257319 - 23257367
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    |||||||||||| |||||||| | |||||||||||||||||| ||||||    
T  23257319 ggtggattctagagtgagggtccaattaagtccctcaccggtaaaccac 23257367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 29594905 - 29594957
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaaccacttt 273  Q
    |||||||||||||||||||||||| ||||||| | |||||| || ||||||||    
T  29594905 aggtggattctagggtgagggttcaattaagttcttcaccgatgtaccacttt 29594957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 29595642 - 29595595
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    |||||||||||| |||||||||| ||||||||||||||| ||| ||||    
T  29595642 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtacca 29595595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 39936254 - 39936293
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcacc 260  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  39936254 aggtggattctaaggtgagggttcaattaagtccctcacc 39936293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 4082993 - 4083035
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtg 264  Q
    ||||||||||||||||||||  ||||||||||||||| |||||    
T  4082993 ggtggattctagggtgagggagctattaagtccctcatcggtg 4083035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 16195179 - 16195129
Alignment:
Q  220 aaggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    |||||||||||||||||||||| || ||||||||| |||| |||| |||||    
T  16195179 aaggtggattctagggtgagggatcaattaagtccatcactggtgtaccac 16195129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 33086727 - 33086773
Alignment:
Q  220 aaggtggattctagggtgagggttctattaagtccctcaccggtgaa 266  Q
    ||||||||||||||| |||||| || ||||||||| |||||||||||    
T  33086727 aaggtggattctaggatgagggatcaattaagtccttcaccggtgaa 33086773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 20476164 - 20476123
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggt 263  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  20476164 ggtggattttagggtgagggatcaattaagtccctcaccggt 20476123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 8743148 - 8743108
Alignment:
Q  223 gtggattctagggtgagggttctattaagtccctcaccggt 263  Q
    |||||||||| ||||| ||||| ||||||||||||||||||    
T  8743148 gtggattctaaggtgaaggttcaattaagtccctcaccggt 8743108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 303
Target Start/End: Original strand, 6463 - 6545
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaataagagtcattagattaatc 303  Q
    |||||| ||||||||||||||||| |||||||||||||||| || |||||  ||||||| || | |||||||||| |||||||    
T  6463 aggtgggttctagggtgagggttcaattaagtccctcaccgatggaccaccatgaacaataattgagagtcattaaattaatc 6545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 16719042 - 16718995
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaacca 269  Q
    ||||||||||||||||| || || ||||||||||||||||||| ||||    
T  16719042 ggtggattctagggtgacggatcaattaagtccctcaccggtggacca 16718995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 2138475 - 2138525
Alignment:
Q  220 aaggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    |||||| |||||||||||||||| | |||| |||||||||||||| |||||    
T  2138475 aaggtgaattctagggtgagggtccaattaggtccctcaccggtggaccac 2138525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 13084928 - 13084878
Alignment:
Q  221 aggtggattctagggtgagggttctattaagtccctcaccggtgaaccact 271  Q
    ||||| |||||||||||||||||| | |||||| |||||||||| ||||||    
T  13084928 aggtgaattctagggtgagggttcaactaagtctctcaccggtgtaccact 13084878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 10966428 - 10966380
Alignment:
Q  222 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccac 270  Q
    ||||||||||||||||| ||| | |||| |||||||||||||| |||||    
T  10966428 ggtggattctagggtgaaggtccaattaggtccctcaccggtggaccac 10966380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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