View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18120_high_15 (Length: 251)
Name: NF18120_high_15
Description: NF18120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18120_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 39794917 - 39794682
Alignment:
| Q |
1 |
catgtgggtacacaaagcttgtaaattttgtaatcaattgcttttcatattatttatatatgtaattggattttaactttcaagttcttactgcgattat |
100 |
Q |
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| T |
39794917 |
catgtggttacacaaagcttgtaaattttgtaatcaattgcttttcatattatttatatatgtaattggattttaactttcaagttcttactgcgattat |
39794818 |
T |
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| Q |
101 |
atcattgaagctcttactgccattattttaagctctagactgagtccaacaatgcaactaatttcccagcaataacgttacatgctattgtggtcctata |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39794817 |
atcattgatgctcttactgccattattttaagctctagactgagtccaacaatgcaactaatttcc---caataacgttacatgctattgtggtcctata |
39794721 |
T |
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| Q |
201 |
cattggtgaagagtagcatataatgtatgtaattgcctt |
239 |
Q |
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| T |
39794720 |
cattggtgaagagtagcatataatgtatgtaattgcctt |
39794682 |
T |
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