View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18120_high_18 (Length: 247)
Name: NF18120_high_18
Description: NF18120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18120_high_18 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 12438841 - 12439078
Alignment:
| Q |
1 |
ccctctatgtatcatttattaaaacatttttattaattatatttgaggaagtacnnnnnnnacccgaaataaatatcttaagaaagtaattaaaattgta |
100 |
Q |
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| T |
12438841 |
ccctttatgtatcatttattaaaacatttttattaattatatttgaggaagtactttttttacccgaaataaatatcttaagaaagtaattaacattgta |
12438940 |
T |
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| Q |
101 |
aagnnnnnnnnttaaactaattaacctgaataacagctttaatgttgttggttgtcaaatgaaatccatcacggttaggagatacatgaatattgagatt |
200 |
Q |
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| T |
12438941 |
aagaaaaaaaattaaactaattaacctgaataacagctttaatgttgttggttgtcaaatgaaatccatcacggttaggagatgcatgaatattgagatt |
12439040 |
T |
|
| Q |
201 |
caaaagataggataaaagacttccatctccacctgtct |
238 |
Q |
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| T |
12439041 |
caaaagataggataaaagacttccatctccacctgtct |
12439078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 121 - 231
Target Start/End: Complemental strand, 2432525 - 2432415
Alignment:
| Q |
121 |
ttaacctgaataacagctttaatgttgttggttgtcaaatgaaatccatcacggttaggagatacatgaatattgagattcaaaagataggataaaagac |
220 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | ||| ||||| ||||||| ||||||||||||| ||||||| |
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| T |
2432525 |
ttaacctgaataacagctttaatgttgttgattgtcaaatgaaatccatcagggttggaagagccatgatcattgagactcaaaagataggacaaaagac |
2432426 |
T |
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| Q |
221 |
ttccatctcca |
231 |
Q |
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| T |
2432425 |
ttccatctcca |
2432415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 41646507 - 41646401
Alignment:
| Q |
122 |
taacctgaataacagctttaatgttgttggttgtcaaatgaaatccatcacggttaggagatacatgaatattgagattcaaaagataggataaaagact |
221 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||||||||||| | |||| ||| ||| | |||||||||||||||||||| |||||||| |
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| T |
41646507 |
taacctgaataacggctttaatgttgttgattgtcaaatgaaatccatccggattagaagagccatcatgtttgagattcaaaagataggacaaaagact |
41646408 |
T |
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| Q |
222 |
tccatct |
228 |
Q |
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| T |
41646407 |
tccatct |
41646401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 41653706 - 41653603
Alignment:
| Q |
122 |
taacctgaataacagctttaatgttgttggttgtcaaatgaaatccatcacggttaggagatacatgaatattgagattcaaaagataggataaaagact |
221 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||| | |||| || ||| | |||||||||||||||||||| |||||||| |
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| T |
41653706 |
taacctgaataacggctttaatgttgttgattgtcaaatgaaatccatcaggattagaag---catcatgtttgagattcaaaagataggacaaaagact |
41653610 |
T |
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| Q |
222 |
tccatct |
228 |
Q |
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| T |
41653609 |
tccatct |
41653603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 231
Target Start/End: Original strand, 5022947 - 5023060
Alignment:
| Q |
118 |
taattaacctgaataacagctttaatgttgttggttgtcaaatgaaatccatcacggttaggagatacatgaatattgagattcaaaagataggataaaa |
217 |
Q |
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||||||||||| |||| |||||||| |||||| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||| | | |
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| T |
5022947 |
taattaacctggataatggctttaatattgttgattgtcaaatgaaatccaatcgggttaggagagccatcgtctttgagattcaaaagataggacagta |
5023046 |
T |
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| Q |
218 |
gacttccatctcca |
231 |
Q |
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| T |
5023047 |
gacttccatctcca |
5023060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 55395 - 55363
Alignment:
| Q |
9 |
gtatcatttattaaaacatttttattaattata |
41 |
Q |
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| T |
55395 |
gtatcatttattaaaacattcttattaattata |
55363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 15057500 - 15057468
Alignment:
| Q |
9 |
gtatcatttattaaaacatttttattaattata |
41 |
Q |
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| T |
15057500 |
gtatcatatattaaaacatttttattaattata |
15057468 |
T |
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