View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18120_high_19 (Length: 246)
Name: NF18120_high_19
Description: NF18120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18120_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 39798786 - 39798544
Alignment:
| Q |
1 |
cttcagaactaaaactttagaactaaactgataaatttcatatatgctatggactacttattaaggactaaattgacaagttattataatatcaaagatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39798786 |
cttcagaactaaaactttagaactaaactgataaatttcatatatgctatggactacttattaaggactaaattgacaagttattataatatcaaagatt |
39798687 |
T |
|
| Q |
101 |
gcaatgcacacctatatgtggttaaaacctagaagggaatcagtacacgtatatatgaaggaagagtaaacaaattggagtctttcttatatacgataat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39798686 |
gcaatgcacacctatatgtggttaaaacctagaagggaatcagtacacgtatatatcaaggaagagtaaacaaatttgagtctttcttatatacgataat |
39798587 |
T |
|
| Q |
201 |
gaaattatttgaaagtaaactagagtttgacctattcatgtga |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39798586 |
gaaattatttgaaagtaaactagagtttgacctattcatgtga |
39798544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University