View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18120_high_23 (Length: 203)

Name: NF18120_high_23
Description: NF18120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18120_high_23
NF18120_high_23
[»] chr8 (6 HSPs)
chr8 (37-186)||(38544225-38544374)
chr8 (68-140)||(2320160-2320232)
chr8 (38-83)||(10500953-10500998)
chr8 (37-77)||(35885336-35885376)
chr8 (37-83)||(10501914-10501960)
chr8 (37-77)||(788026-788066)
[»] chr2 (3 HSPs)
chr2 (93-179)||(20040174-20040258)
chr2 (37-77)||(42946477-42946517)
chr2 (37-83)||(26021913-26021959)
[»] chr6 (2 HSPs)
chr6 (67-181)||(18246207-18246321)
chr6 (37-84)||(3802811-3802858)
[»] chr4 (5 HSPs)
chr4 (71-186)||(16990498-16990613)
chr4 (37-83)||(24471830-24471876)
chr4 (37-77)||(5825334-5825374)
chr4 (32-83)||(35428161-35428212)
chr4 (34-83)||(52915850-52915899)
[»] chr3 (6 HSPs)
chr3 (68-186)||(37241984-37242102)
chr3 (36-80)||(42147553-42147597)
chr3 (68-186)||(1258696-1258814)
chr3 (37-83)||(42146800-42146845)
chr3 (35-83)||(50306525-50306573)
chr3 (38-83)||(51492459-51492504)
[»] scaffold0016 (1 HSPs)
scaffold0016 (35-80)||(67245-67290)
[»] chr1 (8 HSPs)
chr1 (36-83)||(15373956-15374003)
chr1 (37-80)||(15374702-15374745)
chr1 (37-83)||(46358611-46358657)
chr1 (38-83)||(4124701-4124746)
chr1 (36-83)||(3788434-3788481)
chr1 (37-83)||(4125419-4125465)
chr1 (37-83)||(5101853-5101899)
chr1 (35-83)||(51977200-51977248)
[»] chr7 (2 HSPs)
chr7 (37-83)||(9378729-9378775)
chr7 (68-186)||(31234147-31234265)
[»] chr5 (5 HSPs)
chr5 (37-83)||(1282254-1282300)
chr5 (35-77)||(30002862-30002904)
chr5 (93-179)||(39087407-39087493)
chr5 (36-77)||(42310848-42310889)
chr5 (37-83)||(1282969-1283015)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 9e-63; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 38544374 - 38544225
Alignment:
Q  37 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaacacaagatcaatggttagattgtacacttccattaaatcttatcatgctctcc 136  Q
    ||||||||||||||||||||||  ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  38544374 ggtggcatttagggtgggaatgagaaatatttttccaccatgggaaacacaagatcaatggttagattgtacacttctattaaatcttatcatgctctct 38544275  T
Q  137 cacacctaattctaatgatttctcattccaaacttttctcatcttcctcc 186  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38544274 cacacctaattctaatggtttctcattccaaacttttctcatcttcctcc 38544225  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 2320232 - 2320160
Alignment:
Q  68 ttcccaccatgggaaacacaagatcaatggttagattgtacacttccattaaatcttatcatgctctcccaca 140  Q
    |||||||||||||  ||||||||| |||||||||||||| || ||| |||||| ||||||||| |||||||||    
T  2320232 ttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccaca 2320160  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 10500953 - 10500998
Alignment:
Q  38 gtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 83  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||    
T  10500953 gtggcatttagggtgggaatggaaaagatttttccaccatgggaaa 10500998  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 35885336 - 35885376
Alignment:
Q  37 ggtggcatttagggtgggaatggtaaagattttcccaccat 77  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  35885336 ggtggcatttagggtgggaatggaaaagagtttcccaccat 35885376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 10501960 - 10501914
Alignment:
Q  37 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 83  Q
    |||||||||||||||||||| || ||||||||| | |||||||||||    
T  10501960 ggtggcatttagggtgggaagggaaaagatttttctaccatgggaaa 10501914  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 788026 - 788066
Alignment:
Q  37 ggtggcatttagggtgggaatggtaaagattttcccaccat 77  Q
    ||||||||||||||||||||||| ||| | |||||||||||    
T  788026 ggtggcatttagggtgggaatgggaaaaagtttcccaccat 788066  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 179
Target Start/End: Complemental strand, 20040258 - 20040174
Alignment:
Q  93 aatggttagattgtacacttccattaaatcttatcatgctctcccacacctaattctaatgatttctcattccaaacttttctcatc 179  Q
    |||||||||||||| |||||| |||||||||||||||| |||||||||||||||  |||||  |||||  |||||||||||||||||    
T  20040258 aatggttagattgtgcacttctattaaatcttatcatgttctcccacacctaatcttaatggcttctc--tccaaacttttctcatc 20040174  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 42946517 - 42946477
Alignment:
Q  37 ggtggcatttagggtgggaatggtaaagattttcccaccat 77  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  42946517 ggtggcatttagggtgggaatgggaaagagtttcccaccat 42946477  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 26021959 - 26021913
Alignment:
Q  37 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 83  Q
    |||||||||||||||||||| || ||||| ||||||||||| |||||    
T  26021959 ggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 26021913  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 18246207 - 18246321
Alignment:
Q  67 tttcccaccatgggaaacacaagatcaatggttagattgtacacttccattaaatcttatcatgctctcccacacctaattctaatgatttctcattcca 166  Q
    ||||||||||||||  ||||||||| |||||||||||||| || ||| |||||| ||||||||| ||||||||| || ||   |||   ||| | |||||    
T  18246207 tttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttcca 18246306  T
Q  167 aacttttctcatctt 181  Q
    |||||||||||||||    
T  18246307 aacttttctcatctt 18246321  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 3802858 - 3802811
Alignment:
Q  37 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaac 84  Q
    ||||||||||||||||||||||| ||||| |||| ||| |||||||||    
T  3802858 ggtggcatttagggtgggaatgggaaagaatttctcactatgggaaac 3802811  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 16990613 - 16990498
Alignment:
Q  71 ccaccatgggaaacacaagatcaatggttagattgtacacttccattaaatcttatcatgctctcccacacctaattctaatgatttctcattccaaact 170  Q
    ||||||||||  ||||||||| |||||||||||||| || ||| |||||| ||||||||| ||||||||| || ||   |||   ||| | |||||||||    
T  16990613 ccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaaact 16990514  T
Q  171 tttctcatcttcctcc 186  Q
    ||||||||||| ||||    
T  16990513 tttctcatcttgctcc 16990498  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 24471830 - 24471876
Alignment:
Q  37 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 83  Q
    ||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  24471830 ggtggcatttagggtgggaatggaaaagagtttcccaccataggaaa 24471876  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 5825334 - 5825374
Alignment:
Q  37 ggtggcatttagggtgggaatggtaaagattttcccaccat 77  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  5825334 ggtggcatttagggtgggaatgggaaagagtttcccaccat 5825374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 35428212 - 35428161
Alignment:
Q  32 gattgggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 83  Q
    |||| |||||||||||||||||||||||  |||| |||||||| ||||||||    
T  35428212 gattaggtggcatttagggtgggaatggggaagagtttcccactatgggaaa 35428161  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 52915850 - 52915899
Alignment:
Q  34 ttgggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 83  Q
    ||||||||||||||||||||| | || ||||||| ||| |||||||||||    
T  52915850 ttgggtggcatttagggtgggtagggaaaagattctcctaccatgggaaa 52915899  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 186
Target Start/End: Original strand, 37241984 - 37242102
Alignment:
Q  68 ttcccaccatgggaaacacaagatcaatggttagattgtacacttccattaaatcttatcatgctctcccacacctaattctaatgatttctcattccaa 167  Q
    |||| ||||||||  ||||||||| |||||||||||||| || ||| |||||| ||||||||| ||||||||| || ||   |||   ||| | ||||||    
T  37241984 ttcctaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaa 37242083  T
Q  168 acttttctcatcttcctcc 186  Q
    |||||||||||||| ||||    
T  37242084 acttttctcatcttgctcc 37242102  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 42147597 - 42147553
Alignment:
Q  36 gggtggcatttagggtgggaatggtaaagattttcccaccatggg 80  Q
    ||||||||||||||||||||| || ||||||||||||||||||||    
T  42147597 gggtggcatttagggtgggaaggggaaagattttcccaccatggg 42147553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 68 - 186
Target Start/End: Original strand, 1258696 - 1258814
Alignment:
Q  68 ttcccaccatgggaaacacaagatcaatggttagattgtacacttccattaaatcttatcatgctctcccacacctaattctaatgatttctcattccaa 167  Q
    ||||||||||||   ||||||||| |||||||||||| | || ||| |||||| ||||||||| ||||||||| || ||   |||   ||| | ||||||    
T  1258696 ttcccaccatggatcacacaagataaatggttagattatgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaa 1258795  T
Q  168 acttttctcatcttcctcc 186  Q
    |||||||||||||| ||||    
T  1258796 acttttctcatcttgctcc 1258814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 42146800 - 42146845
Alignment:
Q  37 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 83  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||    
T  42146800 ggtggcatttagggtggga-tgggaaagattttcccaccatgggaaa 42146845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 50306573 - 50306525
Alignment:
Q  35 tgggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 83  Q
    |||||||||||||||||||||| || ||||| ||||||||||| |||||    
T  50306573 tgggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 50306525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 51492504 - 51492459
Alignment:
Q  38 gtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 83  Q
    ||||||||||||||||||  |  |||||||||||||||||||||||    
T  51492504 gtggcatttagggtgggatggagaaagattttcccaccatgggaaa 51492459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 67245 - 67290
Alignment:
Q  35 tgggtggcatttagggtgggaatggtaaagattttcccaccatggg 80  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  67245 tgggtggcatttagggtgggaaggggaaagattttcccaccatggg 67290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 15373956 - 15374003
Alignment:
Q  36 gggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 83  Q
    ||||||||||||||||||||  || |||||||||||||||||||||||    
T  15373956 gggtggcatttagggtgggatggggaaagattttcccaccatgggaaa 15374003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 15374745 - 15374702
Alignment:
Q  37 ggtggcatttagggtgggaatggtaaagattttcccaccatggg 80  Q
    |||||||||||||||||||| || ||||||||||||||||||||    
T  15374745 ggtggcatttagggtgggaaggggaaagattttcccaccatggg 15374702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 46358657 - 46358611
Alignment:
Q  37 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 83  Q
    |||||||||||||||||||  || |||||||||||||||||||||||    
T  46358657 ggtggcatttagggtgggatgggaaaagattttcccaccatgggaaa 46358611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 4124701 - 4124746
Alignment:
Q  38 gtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 83  Q
    |||||||||||||||||||||| ||||| |||||||| ||||||||    
T  4124701 gtggcatttagggtgggaatgggaaagagtttcccactatgggaaa 4124746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 3788434 - 3788481
Alignment:
Q  36 gggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 83  Q
    ||||||||||||||||||||| || ||||| ||||||||||| |||||    
T  3788434 gggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 3788481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 4125465 - 4125419
Alignment:
Q  37 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 83  Q
    ||||||||||||||||||||||| ||||| |||||||| || |||||    
T  4125465 ggtggcatttagggtgggaatgggaaagagtttcccactataggaaa 4125419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 5101899 - 5101853
Alignment:
Q  37 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 83  Q
    |||||||||||||||||| | |||||||| || ||||||||||||||    
T  5101899 ggtggcatttagggtgggtaaggtaaagagttacccaccatgggaaa 5101853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 51977248 - 51977200
Alignment:
Q  35 tgggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 83  Q
    ||||||||||||||||||| ||||| ||||| ||| |||| ||||||||    
T  51977248 tgggtggcatttagggtggaaatgggaaagagttttccactatgggaaa 51977200  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 9378729 - 9378775
Alignment:
Q  37 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 83  Q
    |||||||||||||||||||| || ||||||||| |||||||||||||    
T  9378729 ggtggcatttagggtgggaaggggaaagatttttccaccatgggaaa 9378775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 68 - 186
Target Start/End: Original strand, 31234147 - 31234265
Alignment:
Q  68 ttcccaccatgggaaacacaagatcaatggttagattgtacacttccattaaatcttatcatgctctcccacacctaattctaatgatttctcattccaa 167  Q
    ||||||||||||   ||||||||| |||| |||||||||||| ||| |||||| ||||||||| ||||| ||| || ||   |||   ||| | ||||||    
T  31234147 ttcccaccatggatcacacaagataaatgattagattgtacatttctattaaagcttatcatgttctcctacatctgatctcaatagcttcactttccaa 31234246  T
Q  168 acttttctcatcttcctcc 186  Q
    |||||||||||||| ||||    
T  31234247 acttttctcatcttgctcc 31234265  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 1282254 - 1282300
Alignment:
Q  37 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 83  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  1282254 ggtggcatttagggtgggaatgggaaagagtttcccactatgggaaa 1282300  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 30002862 - 30002904
Alignment:
Q  35 tgggtggcatttagggtgggaatggtaaagattttcccaccat 77  Q
    |||||||||||||||||||||| || |||||||||||||||||    
T  30002862 tgggtggcatttagggtgggaaggggaaagattttcccaccat 30002904  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 179
Target Start/End: Complemental strand, 39087493 - 39087407
Alignment:
Q  93 aatggttagattgtacacttccattaaatcttatcatgctctcccacacctaattctaatgatttctcattccaaacttttctcatc 179  Q
    |||||||||||| | || ||| || ||| ||||||||| |||||||||||||||  ||||   ||||| ||||||||||||||||||    
T  39087493 aatggttagattttgcatttctataaaaccttatcatgttctcccacacctaatcttaattgcttctctttccaaacttttctcatc 39087407  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 42310848 - 42310889
Alignment:
Q  36 gggtggcatttagggtgggaatggtaaagattttcccaccat 77  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  42310848 gggtggcatttagggtgggaatgggaaagagtttcccaccat 42310889  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 1283015 - 1282969
Alignment:
Q  37 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 83  Q
    |||| |||||||||||||||||| ||||| |||||||| ||||||||    
T  1283015 ggtgacatttagggtgggaatgggaaagagtttcccactatgggaaa 1282969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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