View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18120_high_24 (Length: 202)
Name: NF18120_high_24
Description: NF18120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18120_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 39794922 - 39795113
Alignment:
| Q |
9 |
atgttatttatttacgagaaacccacaaaaacaagttaaacttgtcaagaaataatgaattaatgaaatattcaaatacatgcatgtgacattacttatc |
108 |
Q |
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| T |
39794922 |
atgttatttatttacgagaaacccacaaaaacaagttaaacttgtcaagaaataatgaattaatgaaatattcaaatacatgcatgtgacattacttatc |
39795021 |
T |
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| Q |
109 |
attcagaaatggcagccacaacaaagatagaagaagcaaacagtggagacaagaacaacagcttcagcaacagagagtatcctaaaaacaac |
200 |
Q |
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| T |
39795022 |
attcagaaatggcagccacaacaaagatagaagaagcaaacagtggagacaagaacaacagcttcagcaacagagagtatcctaaaaacaac |
39795113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 39774042 - 39774130
Alignment:
| Q |
109 |
attcagaaatggcagccacaacaaagatagaagaagcaaacagtggagacaagaacaacagcttcagcaacagagagt-atcctaaaaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |
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| T |
39774042 |
attcagaaatggcagccacaacaaagatagaagaagcaaacagtggagacaagaacaacagcttcagccacaaagagtaatcctaaaaa |
39774130 |
T |
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