View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18120_high_4 (Length: 515)
Name: NF18120_high_4
Description: NF18120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18120_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 38700123 - 38699849
Alignment:
| Q |
17 |
aagatggagatagagtggttgattttattttaagtgctcatataattgagccagatcaacaaatcttgaaactcaatgatttgttctatttcaaagttat |
116 |
Q |
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| T |
38700123 |
aagatggagatagagcggttgattttattttaagtgctcatataattgagccagatcaacaaatcttgaaactcaatgatttgttctatttcaaagttat |
38700024 |
T |
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| Q |
117 |
tataaaccttcaaaatttctaaactaactcaccaaattcaacacaaatcaaccttcatgagtttcacaagtgcttctttcaacacgattaagatttctta |
216 |
Q |
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| T |
38700023 |
tataaaccttcaaaatttctaaactaactcaccaaattcaacacaaatcaaccttcatgagtttcacaagtgcttctttcaacacgattaagatttctta |
38699924 |
T |
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| Q |
217 |
aagttatatatacaaaattcatgttcttgtcgtaattcatttataaaagtctttccaaacgggcttgcatgcata |
291 |
Q |
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| T |
38699923 |
aagttatatatacaaaattcatgttcttgtcgtaattcatttataaaagtcattccaaacgggcttgcatgcata |
38699849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 38699820 - 38699747
Alignment:
| Q |
435 |
gattttgcaagttctataatagtttagatgctttagattcacacatcggacgctgaaagttctatgacctcctt |
508 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38699820 |
gattttgcaagttctataatagtttagatgcttaagattcacacatcggacgctgaaagttctatgacctcctt |
38699747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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