View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18120_high_8 (Length: 415)
Name: NF18120_high_8
Description: NF18120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18120_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 210 - 368
Target Start/End: Complemental strand, 2203823 - 2203665
Alignment:
| Q |
210 |
agctatatggagtcagatcctttcaaaattgctgtggaaggtgtggagagattcaaggaacaaaactgtgatcttataattgttgataccagtggacgct |
309 |
Q |
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| T |
2203823 |
agctatatggagtcagatcctgtgaaaattgctgtggaaggtgtggaaagattcaagaaagaaaactgtgatcttataattgttgatactagtgggcggc |
2203724 |
T |
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| Q |
310 |
acaaacaagaagctgccctatttgaagaaatgcgtcaactttcagaagcaacggtattt |
368 |
Q |
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| T |
2203723 |
acaaacaagaagctgctctttttgaagaaatgcgtcaagtttcagaagcaacggtattt |
2203665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 72 - 211
Target Start/End: Complemental strand, 2204930 - 2204794
Alignment:
| Q |
72 |
acttgtacaaaatacgcccattattatcagaagaaaggatggaagccagcttaattagtatgtgcagatacatttagagctgctgcatttgatcaattga |
171 |
Q |
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| T |
2204930 |
acttgtacaaaatatgcattttatcatcaaaagaaaggctggaagccagctc---tagtatgtgcagatacattcagagctggtgcgtttgatcagttga |
2204834 |
T |
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| Q |
172 |
agcaaaatgccactaaagctaaaattcctttttgtggaag |
211 |
Q |
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| T |
2204833 |
agcaaaatgcaaccaaagctaagatccctttctatggaag |
2204794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 52 - 218
Target Start/End: Original strand, 44823924 - 44824087
Alignment:
| Q |
52 |
caggttctggaaagactacaacttgtacaaaatacgcccattattatcagaagaaaggatggaagccagcttaattagtatgtgcagatacatttagagc |
151 |
Q |
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| T |
44823924 |
caggttctggaaaaactacaacatgtacaaaatatgcgcattgttatcagaagaaaggatggaagccagctt---tagtgtgtgcagatacatttagagc |
44824020 |
T |
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| Q |
152 |
tgctgcatttgatcaattgaagcaaaatgccactaaagctaaaattcctttttgtggaagctatatg |
218 |
Q |
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| T |
44824021 |
tggtgcatttgatcaattgaagcaaaatgctactaaagctaagatccctttttatggaaggtatatg |
44824087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 210 - 366
Target Start/End: Original strand, 44826288 - 44826444
Alignment:
| Q |
210 |
agctatatggagtcagatcctttcaaaattgctgtggaaggtgtggagagattcaaggaacaaaactgtgatcttataattgttgataccagtggacgct |
309 |
Q |
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| T |
44826288 |
agctatatggagtcagatcctgtcaaaattgctgtggaaggtgtggaaagattcaaggaagaagaccatgatcttataattgttgataccagtgggcggc |
44826387 |
T |
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| Q |
310 |
acaaacaagaagctgccctatttgaagaaatgcgtcaactttcagaagcaacggtat |
366 |
Q |
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| T |
44826388 |
acaaacaagaagcatccctttttgaagaaatgcgccaactttcggaagctacggtat |
44826444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 234 - 352
Target Start/End: Complemental strand, 33167778 - 33167657
Alignment:
| Q |
234 |
aaaattgctgtggaaggtgtggagagattcaaggaacaaaactgtgatcttataattgttgataccagtggacgctacaaacaa---gaagctgccctat |
330 |
Q |
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||||||| |||||||| |||||||| ||||||||| |||||| ||||||||||| ||||||||||||||| | |||||||| |||| ||| || | |
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| T |
33167778 |
aaaattgtggtggaaggcgtggagaggttcaaggaagaaaactatgatcttataagtgttgataccagtgggggtcacaaacaagaggaagatgctcttt |
33167679 |
T |
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| Q |
331 |
ttgaagaaatgcgtcaactttc |
352 |
Q |
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| T |
33167678 |
ttgaagaaatgcgccaagtttc |
33167657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 33168678 - 33168626
Alignment:
| Q |
127 |
tagtatgtgcagatacatttagagctgctgcatttgatcaattgaagcaaaat |
179 |
Q |
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|||| ||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
33168678 |
tagtttgtgcagatacatttagagatggtgcatttgatcaattgaagcaaaat |
33168626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 33159341 - 33159289
Alignment:
| Q |
127 |
tagtatgtgcagatacatttagagctgctgcatttgatcaattgaagcaaaat |
179 |
Q |
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| T |
33159341 |
tagtttgtgcagatgcatttagagatggtgcatttgatcaattgaagcaaaat |
33159289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 33116080 - 33116017
Alignment:
| Q |
232 |
tcaaaattgctgtggaaggtgtggagagattcaaggaacaaaactgtgatcttataattgttgat |
296 |
Q |
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| T |
33116080 |
tcaaaattgccgtgaaaggtgtggacagatgcaaggaggaaa-ctgtgatcttataattgttgat |
33116017 |
T |
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