View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18120_low_1 (Length: 790)
Name: NF18120_low_1
Description: NF18120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18120_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 659; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 1 - 775
Target Start/End: Complemental strand, 44109792 - 44109015
Alignment:
| Q |
1 |
aggacaccttaagaggaattccagtattgtttttctagtgaaaggtttaatcctccgatgcagacaaagatgtgtcaaattgtggaactcgggaaggaga |
100 |
Q |
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| T |
44109792 |
aggacaccttaagaggaattccagtactgtttttatagtgaaaggtttaatcctccgatgcagacaaagatgtgtcaaattgtggaactcgggaaggaga |
44109693 |
T |
|
| Q |
101 |
tggagatgatcaattgcatagaaaggatactnnnnnnnntgtaacagaaatagatttgcatgggaaacacaactaaaggcaacattgcgcatcaatacgc |
200 |
Q |
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|||||||||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44109692 |
tggagatgatcaattgcatagagaggatcctaaaaaaa-tgaaacagaaatagatttgcatgggaaacacaactaaaggcaacattgcgcatcaatacac |
44109594 |
T |
|
| Q |
201 |
attatattatacacaatatttaaaaagataaatgatgatgatcagataaaagataatacataccttcaaagcgttcgctgatagtgcgagagacttgaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44109593 |
attatattatacacaatatttaaaaagataaatgatgatgatcagataaaagataatacataccttcaaagcgtttgctgatagtgcgagagacttgaca |
44109494 |
T |
|
| Q |
301 |
cttgcaagtccactcaatagcacaactgaataaggagaaacatgccataacatgttgatacagatccacattgatgttttgcattctgtacagttattac |
400 |
Q |
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| T |
44109493 |
cttgcaagtccactcaatagcacaactgaataaggagaaacatgccataacaggttgatacagatccacattgatgttttgcattctgtacagttattac |
44109394 |
T |
|
| Q |
401 |
aaaaatccaaatcactttcatccaactttgtgagacatatagctttgaagaggcaaattatttcttgagatgctgacagttattaccaacctccaactat |
500 |
Q |
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| T |
44109393 |
aaaaattcaaatcactttcatccaactttgagagacatatagctttgaagaggcaaattatttcttgagatgcagacagttattaccaacctccaactat |
44109294 |
T |
|
| Q |
501 |
tacacttcaagactccaatcttgtatcgattctaagtgtagatagcacattctcctctttctgtcggaaaatggtttggcaaaacatttagtatctgtgg |
600 |
Q |
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| T |
44109293 |
tacacttcacgactccaatcttgtatcgattctaagtgtagatagcacattctcctctttctgttggaaaatggtttggcaaaacatttagtatctgtgg |
44109194 |
T |
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| Q |
601 |
tgtaatggtgggtgagtaagagatttcatatgcacttgaaattgtatttgtgtactttttgtatattcagtcatgacatttaagtgttaattatcattga |
700 |
Q |
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| T |
44109193 |
tgtaatggtgggtgagtaagagatttcatatgcacttgaaattgtatttgtgtactttttgtatattcagtcatgacatttaagtgttaattatcattga |
44109094 |
T |
|
| Q |
701 |
ta-----gcgagccacaatcgatgagaatgcttgctatttgattgttctcctgtagtatgtcatgccgagccaagtttct |
775 |
Q |
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|| |||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||| ||||||||||||| |
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| T |
44109093 |
tagcgaagcgagccacaatcgatgagaatgcttgcta-ttgattattctccagtagtatgtcatgctgagccaagtttct |
44109015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 534 - 774
Target Start/End: Complemental strand, 44146781 - 44146541
Alignment:
| Q |
534 |
aagtgtagatagcacattctcctctttctgtcggaaaatggtttggcaaaacatttagtatctgtggtgtaatggtgggtgagtaagagatttcatatgc |
633 |
Q |
| |
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||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| |
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| T |
44146781 |
aagtgtagatagcacgttcttctctttctgtcgggaaatgctttggcaaaacatttagtacctgtggtgtagtggcgggtgagtaagagatttcatatgc |
44146682 |
T |
|
| Q |
634 |
acttgaaattgtatttgtgtactttttgtatattcagtcatgacatttaagtgttaattatcattgatagcgagccacaatcgatgagaatgcttgctat |
733 |
Q |
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| T |
44146681 |
acttgaaattgtatttctgtgctttttgtatattcagtcatgacatttaagtgttaattatcgttgatgctgagccacaatcaatgagaatgcttgctat |
44146582 |
T |
|
| Q |
734 |
ttgattgttctcctgtagtatgtcatgccgagccaagtttc |
774 |
Q |
| |
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|||||| ||| |||||||||| |||||| ||| || ||||| |
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| T |
44146581 |
ttgattattcccctgtagtatttcatgctgagtcaggtttc |
44146541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 40276701 - 40276437
Alignment:
| Q |
1 |
aggacaccttaagaggaattccagtattgtttttctagtgaaaggtttaatcctccgatgcagacaaagatgtgtcaaattgtggaactcgggaaggaga |
100 |
Q |
| |
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||||||||||||||||||||||| || |||||||||| |||| ||||| | || |||||||||||||||||||||||||| ||| |||||| || |
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| T |
40276701 |
aggacaccttaagaggaattccattaatgtttttctactgaaga---taatctccaaatccagacaaagatgtgtcaaattgtggagctcaggaagggga |
40276605 |
T |
|
| Q |
101 |
tggagatgatcaattgcatagaaaggatactnnnnnnnntgtaacagaaatagatttgcatgggaaacacaactaaaggcaacattgcgcatcaatacgc |
200 |
Q |
| |
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||||||||||||||| |||||| ||| | || | |||| |||||| |||||||||||||||| | ||||||||||||| || ||||||||| |
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| T |
40276604 |
tggagatgatcaattacatagagaggttcctagtaaaag-gaaacaacaatagacttgcatgggaaacacagccaaaggcaacattgtgcgtcaatacgc |
40276506 |
T |
|
| Q |
201 |
at-----tatattatacacaatatttaaaaagataaatgatgatgatcagataaaagataatacatacc |
264 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||| |||| ||||| |||||| |||||||||| |
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| T |
40276505 |
atcttattatattatacacaatatttaaaaagataaatgaagatgttcagaaaaaagacaatacatacc |
40276437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 207 - 338
Target Start/End: Original strand, 40450765 - 40450897
Alignment:
| Q |
207 |
ttatacacaatatttaaaaagat-aaatgatgatgatcagataaaagataatacataccttcaaagcgttcgctgatagtgcgagagacttgacacttgc |
305 |
Q |
| |
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||||||||||||||||||||||| |||||| |||||| ||| ||||| ||||||||||| | |||| || | |||||||| ||||||||||||||||| |
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| T |
40450765 |
ttatacacaatatttaaaaagattaaatgaagatgatgagagaaaaggtaatacataccctaaaagtgtcctttgatagtgtaagagacttgacacttgc |
40450864 |
T |
|
| Q |
306 |
aagtccactcaatagcacaactgaataaggaga |
338 |
Q |
| |
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| T |
40450865 |
aagtccactcagtagcacaaccgaataaggaga |
40450897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 40450649 - 40450710
Alignment:
| Q |
61 |
cagacaaagatgtgtcaaattgtggaactcgggaaggagatggagatgatcaattgcataga |
122 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
40450649 |
cagacaaagatgtgtcaaattgtggaactcaggaaggagatggagatgatcaattacataga |
40450710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 383 - 452
Target Start/End: Complemental strand, 43760320 - 43760251
Alignment:
| Q |
383 |
attctgtacagttattacaaaaatccaaatcactttcatccaactttgtgagacatatagctttgaagag |
452 |
Q |
| |
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||||||| |||||||||||||||| ||||||||||||||| ||||||| ||| || |||||||||||||| |
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| T |
43760320 |
attctgttcagttattacaaaaattcaaatcactttcatcaaactttgagaggcagatagctttgaagag |
43760251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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