View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18120_low_10 (Length: 314)
Name: NF18120_low_10
Description: NF18120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18120_low_10 |
 | |
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| [»] chr4 (4 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold1155 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 10 - 314
Target Start/End: Original strand, 21833069 - 21833373
Alignment:
| Q |
10 |
catcatcaatcctcttcgattatcactgactgtcctcaatccaacacgccctctcatccgtcccctcttcaaaaggttcaccaatcttacctcccttaac |
109 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
21833069 |
catcatcgatcctcttcgattatcactgactgtcctcaatccaacacgccctctcatccgtcccctcttcaaaagattcaccaaccttacctcccttaac |
21833168 |
T |
|
| Q |
110 |
ctctctcgcttccacggtgacctcgacaaccttctccgtcaaatctctcgtttcccatcattgaacatcaagtcactcaatatctccaacaaacccacca |
209 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21833169 |
ctctctcgcttccacggtgacctcaacaaccttctccgtcaaatctctcgtttcccatcattgaacatcaagtcactcaatatctccaacaaacccacca |
21833268 |
T |
|
| Q |
210 |
ttcccgcagatgggttgcgagtttttgcacaaaactttactactttgacctctcacccttgttccagaattgctaatttcaataccactgacctgttcct |
309 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21833269 |
ttcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgttccaaaattgctaatttcaataccactgacctgttcct |
21833368 |
T |
|
| Q |
310 |
catcg |
314 |
Q |
| |
|
||||| |
|
|
| T |
21833369 |
catcg |
21833373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 263
Target Start/End: Complemental strand, 553865 - 553770
Alignment:
| Q |
168 |
cattgaacatcaagtcactcaatatctccaacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaactttactactttgacctctc |
263 |
Q |
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|||||||| ||| |||||| || ||||| | |||||||||||||||||| |||||||||||| ||| | |||||| |||| ||||||||||||| |
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| T |
553865 |
cattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctctc |
553770 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 8186323 - 8186373
Alignment:
| Q |
182 |
tcactcaatatctccaacaaacccaccattcccgcagatgggttgcgagtt |
232 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| ||| |||| ||||||||| |
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|
| T |
8186323 |
tcactcaatctctctaacaaacccaccattcctgcaaatggattgcgagtt |
8186373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 661962 - 661902
Alignment:
| Q |
170 |
ttgaacatcaagtcactcaatatctccaacaaacccaccattcccgcagatgggttgcgag |
230 |
Q |
| |
|
||||| |||| |||||||||| |||||||| || ||||||||||||| |||| ||||||| |
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|
| T |
661962 |
ttgaaaatcacgtcactcaatctctccaaccaaaccaccattcccgctaatggtttgcgag |
661902 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 32 - 274
Target Start/End: Complemental strand, 10615955 - 10615713
Alignment:
| Q |
32 |
tcactgactgtcctcaatccaacacgccctctcatccgtcccctcttcaaaaggttcaccaatcttacctcccttaacctctctcgcttccacggtgacc |
131 |
Q |
| |
|
||||| ||| || ||||||||||||||||| || | | | |||||| ||||| ||||| || |||| ||||| |||||| | |||||||||||||||| |
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|
| T |
10615955 |
tcactcactatcttcaatccaacacgccctttcctttgcctcctctttaaaagattcacaaaccttaattccctcaacctcacacgcttccacggtgacc |
10615856 |
T |
|
| Q |
132 |
tcgacaaccttctccgtcaaatctctcgtttcccatcattgaacatcaagtcactcaatatctccaacaaacccaccattcccgcagatgggttgcgagt |
231 |
Q |
| |
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| ||| |||||||| |||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||||| |||||||| ||||||| |||| |
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| T |
10615855 |
ttgacgctcttctccgcaaaatctctcgtttcccatcattgaacatcacatcacttaatatttccaaccaacccacagttcccgcaaatgggttacgagc |
10615756 |
T |
|
| Q |
232 |
ttttgcacaaaactttactactttgacctctcacccttgttcc |
274 |
Q |
| |
|
||| | ||||| |||| ||||||||||||| | |||||||| |
|
|
| T |
10615755 |
tttctcccaaaagattacaactttgacctctctcacttgttcc |
10615713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 10169037 - 10169106
Alignment:
| Q |
205 |
caccattcccgcagatgggttgcgagtttttgcacaaaactttactactttgacctctcacccttgttcc |
274 |
Q |
| |
|
||||||||||||| |||||||||||||||| | ||||| ||| ||||||||||||| | |||||||| |
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|
| T |
10169037 |
caccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttcc |
10169106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 10176562 - 10176631
Alignment:
| Q |
205 |
caccattcccgcagatgggttgcgagtttttgcacaaaactttactactttgacctctcacccttgttcc |
274 |
Q |
| |
|
||||||||||||| |||||||||||||||| | ||||| ||| ||||||||||||| | |||||||| |
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|
| T |
10176562 |
caccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttcc |
10176631 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 24 - 274
Target Start/End: Complemental strand, 6417342 - 6417092
Alignment:
| Q |
24 |
ttcgattatcactgactgtcctcaatccaacacgccctctcatccgtcccctcttcaaaaggttcaccaatcttacctcccttaacctctctcgcttcca |
123 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| || | ||| |||||| ||||| ||||| || |||| ||||| |||||| | ||||| || |
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| T |
6417342 |
ttcgattcacactgactatcctcaatccaacacgccctttcctttgtcgcctctttaaaagattcacaaaccttaattccctcaacctcacacgctttca |
6417243 |
T |
|
| Q |
124 |
cggtgacctcgacaaccttctccgtcaaatctctcgtttcccatcattgaacatcaagtcactcaatatctccaacaaacccaccattcccgcagatggg |
223 |
Q |
| |
|
|| ||||| || ||||||||| ||||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||| |||||| | ||||| |
|
|
| T |
6417242 |
tggcgaccttgatgctcttctccgtaaaatctctcgttttccatcattgaacatcacatcacttaatatctccaaccaacccacttttcccgtaaatggg |
6417143 |
T |
|
| Q |
224 |
ttgcgagtttttgcacaaaactttactactttgacctctcacccttgttcc |
274 |
Q |
| |
|
|| |||| ||| | ||||| ||| ||||||||||||| | |||||||| |
|
|
| T |
6417142 |
ttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcc |
6417092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 6588179 - 6588248
Alignment:
| Q |
127 |
tgacctcgacaaccttctccgtcaaatctctcgtttcccatcattgaacatcaagtcactcaatatctcc |
196 |
Q |
| |
|
|||||||||| ||||||| | |||||||||||||||||| ||||||| |||| ||||||||| ||||| |
|
|
| T |
6588179 |
tgacctcgacgaccttctttgccaaatctctcgtttcccaacattgaaaatcacttcactcaatctctcc |
6588248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 263
Target Start/End: Original strand, 7993412 - 7993594
Alignment:
| Q |
81 |
aaaggttcaccaatcttacctcccttaacctctctcgcttccacggtgacctcgacaaccttctccgtcaaatctctcgtttcccatcattgaacatcaa |
180 |
Q |
| |
|
|||| ||||| || |||| |||||| |||||||| || ||| ||||||| ||||| |||| || |||||||| |||||||||||||||||||| |
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|
| T |
7993412 |
aaagattcactaaccttaactccctcaacctctcgaactaccattgtgaccttgacaagtttctgcgggaaatctctactttcccatcattgaacatcac |
7993511 |
T |
|
| Q |
181 |
gtcactcaatatctccaacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaactttactactttgacctctc |
263 |
Q |
| |
|
|| || ||||||||| || || || | ||||||| |||| ||||||| ||||| |||||| |||| | ||||||||||| |
|
|
| T |
7993512 |
atcccttaatatctccgaccaatgcaactttcccgcctatggtttgcgagcatttgcccaaaacattacaattttgacctctc |
7993594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 309
Target Start/End: Original strand, 13469463 - 13469740
Alignment:
| Q |
32 |
tcactgactgtcctcaatccaacacgccctctcatccgtcccctcttcaaaaggttcaccaatcttacctcccttaacctctctcgcttccacggtgacc |
131 |
Q |
| |
|
||||| ||| ||||||||||||||| |||| || | ||| |||||| ||||| ||||| || |||| || || |||||| | |||||||| || |||| |
|
|
| T |
13469463 |
tcactcactatcctcaatccaacacaccctttcctttgtcgcctctttaaaagattcacaaaccttaattcactcaacctcacacgcttccatggggacc |
13469562 |
T |
|
| Q |
132 |
tcgacaaccttctccgtcaaatctctcgtttcccatcattgaacatcaagtcactcaatatctccaacaaacccaccattcccgcagatgggttgcgagt |
231 |
Q |
| |
|
| ||| |||||||| |||||||||| ||| ||||||||||||||| ||||| ||| |||||||| ||||||| |||| ||| ||||||| |||| |
|
|
| T |
13469563 |
ttgacgctcttctccgcaaaatctctcgcttctcatcattgaacatcacatcacttaatctctccaaccaacccactgttcctgcaaatgggttacgagc |
13469662 |
T |
|
| Q |
232 |
ttttgcacaaaactttactactttgacctctcacccttgttccagaattgctaatttcaataccactgacctgttcct |
309 |
Q |
| |
|
||| | ||||| ||| || ||||||||| | |||||||| |||||||||||||||| || |||||||||||| |
|
|
| T |
13469663 |
tttctcccaaaagaatacaacgctgacctctctcacttgttcccacattgctaatttcaatagcagtgacctgttcct |
13469740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 185 - 314
Target Start/End: Original strand, 19467398 - 19467527
Alignment:
| Q |
185 |
ctcaatatctccaacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaactttactactttgacctctcacccttgttccagaattgcta |
284 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||| |||||||||||||||| | ||||| |||| ||||||||||||| | |||||| | ||||| |
|
|
| T |
19467398 |
ctcattatctccaacagacacaccattcccgcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctcacttgtttcgacattgcag |
19467497 |
T |
|
| Q |
285 |
atttcaataccactgacctgttcctcatcg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
19467498 |
atttcaataccactgacctgttcctcatcg |
19467527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 30828001 - 30827961
Alignment:
| Q |
74 |
ctcttcaaaaggttcaccaatcttacctcccttaacctctc |
114 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
30828001 |
ctcttcaaaaggttcaccaatctcacctccctcgacctctc |
30827961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1155 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold1155
Description:
Target: scaffold1155; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 82 - 234
Target Start/End: Original strand, 1753 - 1902
Alignment:
| Q |
82 |
aaggttcaccaatcttacctcccttaacctctctcgcttccacggtgacctcgacaaccttctccgtcaaatctctcgtttcccatcattgaacatcaag |
181 |
Q |
| |
|
||||||||| || |||||||||||||||||||| | | | || |||||||| || || |||| | |||||||||||||||||| ||||| ||| |
|
|
| T |
1753 |
aaggttcacaaaccttacctcccttaacctctcgtgttacaacagtgacctcaacgtgctactccatgaaatctctcgtttcccat---tgaacctcaca |
1849 |
T |
|
| Q |
182 |
tcactcaatatctccaacaaacccaccattcccgcagatgggttgcgagtttt |
234 |
Q |
| |
|
||||||||| ||||| || |||||| |||||||||||||||||||||||||| |
|
|
| T |
1850 |
tcactcaatctctcctaccaacccataattcccgcagatgggttgcgagtttt |
1902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 82 - 234
Target Start/End: Complemental strand, 8463 - 8314
Alignment:
| Q |
82 |
aaggttcaccaatcttacctcccttaacctctctcgcttccacggtgacctcgacaaccttctccgtcaaatctctcgtttcccatcattgaacatcaag |
181 |
Q |
| |
|
||||||||| || |||||||||||||||||||| | | | || |||||||| || || |||| | |||||||||||||||||| ||||| ||| |
|
|
| T |
8463 |
aaggttcacaaaccttacctcccttaacctctcgtgttacaacagtgacctcaacgtgctactccatgaaatctctcgtttcccat---tgaacctcaca |
8367 |
T |
|
| Q |
182 |
tcactcaatatctccaacaaacccaccattcccgcagatgggttgcgagtttt |
234 |
Q |
| |
|
||||||||| ||||| || |||||| |||||||||||||||||||||||||| |
|
|
| T |
8366 |
tcactcaatctctcctaccaacccataattcccgcagatgggttgcgagtttt |
8314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 82 - 234
Target Start/End: Original strand, 30516 - 30665
Alignment:
| Q |
82 |
aaggttcaccaatcttacctcccttaacctctctcgcttccacggtgacctcgacaaccttctccgtcaaatctctcgtttcccatcattgaacatcaag |
181 |
Q |
| |
|
||||||||| || |||||||||||||||||||| | | | || |||||||| || || |||| | |||||||||||||||||| ||||| ||| |
|
|
| T |
30516 |
aaggttcacaaaccttacctcccttaacctctcgtgttacaacagtgacctcaacgtgctactccatgaaatctctcgtttcccat---tgaacctcaca |
30612 |
T |
|
| Q |
182 |
tcactcaatatctccaacaaacccaccattcccgcagatgggttgcgagtttt |
234 |
Q |
| |
|
||||||||| ||||| || |||||| |||||||||||||||||||||||||| |
|
|
| T |
30613 |
tcactcaatctctcctaccaacccataattcccgcagatgggttgcgagtttt |
30665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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