View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18120_low_13 (Length: 276)
Name: NF18120_low_13
Description: NF18120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18120_low_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 12438392 - 12438639
Alignment:
| Q |
18 |
cttcattccaatactttgggtctcttccaattgcccatgcattcacaagcacttgtgttccggctggtattatgtatccgttaaccacacaattttcttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12438392 |
cttcattccaatactttgggtctcttccaattgcccatgcattcacaagcacttgtgttccggctggtattatgtatccgttaaccacacaattttcaat |
12438491 |
T |
|
| Q |
118 |
acactctcttggaattagtagaggaccaggagggtgcaatcttaaggtttctttaatcactgcttttacatattttagttcttgaagattcatttcatca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
12438492 |
acactctcttggaattagtagaggaccaggagggtgcaatcttaaggtttctttaatcactgcttttaaatattttagttcttgaagatttatttcatca |
12438591 |
T |
|
| Q |
218 |
acatatcccttgcttccaacaacatgcctaacttctgcttgagccttt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12438592 |
acatatcccttgcttccaacaacatgcctaacttctgcttgagccttt |
12438639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 24 - 265
Target Start/End: Complemental strand, 2433588 - 2433347
Alignment:
| Q |
24 |
tccaatactttgggtctcttccaattgcccatgcattcacaagcacttgtgttccggctggtattatgtatccgttaaccacacaattttctttacactc |
123 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| ||||||||| |||||||||||| | ||||||| ||||||| |||| | ||||| |||| ||||||| |
|
|
| T |
2433588 |
tccaatacttttggtctcttcctattgcccatccattcacaaacacttgtgttccagatggtattgtgtatccattaatctcacaagtttcaatacactc |
2433489 |
T |
|
| Q |
124 |
tcttggaattagtagaggaccaggagggtgcaatcttaaggtttctttaatcactgcttttacatattttagttcttgaagattcatttcatcaacatat |
223 |
Q |
| |
|
|||||| | ||||||||||| ||| |||||||||||||||||||||||||| | ||||||||||||||| |||||||||| ||| |||||||||| |||| |
|
|
| T |
2433488 |
tcttggtagtagtagaggactaggtgggtgcaatcttaaggtttctttaattattgcttttacatatttcagttcttgaaaatttatttcatcaatatat |
2433389 |
T |
|
| Q |
224 |
cccttgcttccaacaacatgcctaacttctgcttgagccttt |
265 |
Q |
| |
|
|| ||| |||||| || || ||||||||||||||||||||| |
|
|
| T |
2433388 |
cctttgtttccaaagacttgtctaacttctgcttgagccttt |
2433347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 41654659 - 41654415
Alignment:
| Q |
18 |
cttcattccaatactttgggtctcttccaattgcccatgcattcacaagcacttgtgttccggctggtattatgtatccgttaaccacacaattttcttt |
117 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||| || | | ||||| |||| | |
|
|
| T |
41654659 |
cttcaatccaatacttttggtctcttccaattgcccatgcattcacaaacacttgtgttccagctggtattgtgtatccatttatctcacaagtttcaat |
41654560 |
T |
|
| Q |
118 |
acactctcttggaattagtagaggaccaggagggtgcaatcttaaggtttctttaatcactgcttttacatattttagttcttgaagattcatttcatca |
217 |
Q |
| |
|
||||||||| |||| || | |||| |||||| |||| |||||| ||||||||||| |||||||||| |||||| ||||||||||||| |||||||| |
|
|
| T |
41654559 |
acactctctaggaa--ag-acaggattaggaggatgcactcttaatgtttctttaataactgcttttagatatttcagttcttgaagatctttttcatca |
41654463 |
T |
|
| Q |
218 |
acatatcccttgcttccaacaacatgcctaacttctgcttgagccttt |
265 |
Q |
| |
|
|||||||| |||| |||| | | || ||||||||| ||||||||||| |
|
|
| T |
41654462 |
acatatcctctgctaccaaaagcttgtctaacttcttcttgagccttt |
41654415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 41647124 - 41646880
Alignment:
| Q |
18 |
cttcattccaatactttgggtctcttccaattgcccatgcattcacaagcacttgtgttccggctggtattatgtatccgttaaccacacaattttcttt |
117 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||||||||| |||||||| |||||||||||| ||||||||| ||||||| || | | ||||| |||| | |
|
|
| T |
41647124 |
cttcaatccaatatttttcgtctcttccaattgcccatgaattcacaaacacttgtgttccagctggtattgtgtatccatttatctcacaagtttcaat |
41647025 |
T |
|
| Q |
118 |
acactctcttggaattagtagaggaccaggagggtgcaatcttaaggtttctttaatcactgcttttacatattttagttcttgaagattcatttcatca |
217 |
Q |
| |
|
||||||||| |||| || | |||| || ||||||||||||||||||||||||||| |||||||||| | |||| |||| |||||||| |||||||| |
|
|
| T |
41647024 |
acactctctaggaa--ag-ataggattagaagggtgcaatcttaaggtttctttaataactgcttttagaaatttcagtttttgaagatctttttcatca |
41646928 |
T |
|
| Q |
218 |
acatatcccttgcttccaacaacatgcctaacttctgcttgagccttt |
265 |
Q |
| |
|
|||||||| |||| |||| | | || ||||||||| ||||||||||| |
|
|
| T |
41646927 |
acatatcctctgctaccaaaagcttgtctaacttcttcttgagccttt |
41646880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 262
Target Start/End: Original strand, 41620882 - 41621105
Alignment:
| Q |
36 |
ggtctcttccaattgcccatgcattcacaagcacttgtgttccggctggtattatgtatccgttaaccacacaattttctttacactctcttggaattag |
135 |
Q |
| |
|
|||||||| |||||||||||| |||||| | ||| ||||||||| | |||||| ||||||| || | | ||||| |||| |||||||||| ||| | |
|
|
| T |
41620882 |
ggtctcttgcaattgcccatgtattcactaacacgtgtgttccgcccggtattgtgtatccatttatctcacaagtttcagcacactctcttagaa---g |
41620978 |
T |
|
| Q |
136 |
tagaggaccaggagggtgcaatcttaaggtttctttaatcactgcttttacatattttagttcttgaagattcatttcatcaacatatcccttgcttcca |
235 |
Q |
| |
|
|| |||| |||||| |||| ||| |||||||||||||| |||||||||| | |||| ||||||| ||||| |||||||||||||||| |||| || |
|
|
| T |
41620979 |
taaaggattaggaggatgcagtctgaaggtttctttaataactgcttttagaaatttcagttcttcaagatctttttcatcaacatatcctctgctaaca |
41621078 |
T |
|
| Q |
236 |
acaacatgcctaacttctgcttgagcc |
262 |
Q |
| |
|
| | |||| ||||||||| |||||||| |
|
|
| T |
41621079 |
aaagcatgtctaacttcttcttgagcc |
41621105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 41465852 - 41465666
Alignment:
| Q |
19 |
ttcattccaatactttgggtctcttccaattgcccatgcattcacaagcacttgtgttccggctggtattatgtatccgttaaccacacaattttcttta |
118 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| ||||||||||| || | ||||| ||||||| ||||| |||| || |||| | ||||| ||||| | |
|
|
| T |
41465852 |
ttcactccaatactttggatctcttccaatcgcccatgcatttactatcactttgtttccggcatgtattgtgtagcctttaatctcacaagtttctctg |
41465753 |
T |
|
| Q |
119 |
cactctcttggaattagtagaggaccaggagggtgcaatcttaaggtttctttaatcactgcttttacatattttagttcttgaaga |
205 |
Q |
| |
|
|| ||||| || | || ||||| ||||||||||||||||| |||||||| || |||||||| | |||||| ||| |||||||| |
|
|
| T |
41465752 |
cattctctagggagaagaagagggaaaggagggtgcaatcttagtgtttctttgatgactgctttcaaatatttcagtccttgaaga |
41465666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 5022259 - 5022333
Alignment:
| Q |
151 |
gtgcaatcttaaggtttctttaatcactgcttttacatattttagttcttgaagattcatttcatcaacatatcc |
225 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||| | |||| | ||||||||||| || ||||||||||||||| |
|
|
| T |
5022259 |
gtgcattcttaaggtttctttaatcacttcttttagaaatttcaattcttgaagatccacttcatcaacatatcc |
5022333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 5022210 - 5022258
Alignment:
| Q |
40 |
tcttccaattgcccatgcattcacaagcacttgtgttccggctggtatt |
88 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
5022210 |
tcttccaattgcccatgcattcacaagaacttgtgttcctgctggtatt |
5022258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 15885873 - 15885832
Alignment:
| Q |
19 |
ttcattccaatactttgggtctcttccaattgcccatgcatt |
60 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
15885873 |
ttcagtccaatactttggatctcttccaatcgcccatgcatt |
15885832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University