View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18120_low_18 (Length: 247)

Name: NF18120_low_18
Description: NF18120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18120_low_18
NF18120_low_18
[»] chr6 (6 HSPs)
chr6 (18-247)||(7318417-7318646)
chr6 (16-145)||(22795321-22795450)
chr6 (15-78)||(2900557-2900620)
chr6 (15-78)||(30230470-30230532)
chr6 (15-87)||(8839133-8839205)
chr6 (185-243)||(15139333-15139391)
[»] chr4 (14 HSPs)
chr4 (18-146)||(36392191-36392319)
chr4 (185-247)||(19585443-19585505)
chr4 (17-81)||(42586646-42586710)
chr4 (185-247)||(41354072-41354134)
chr4 (15-68)||(36756038-36756091)
chr4 (185-245)||(856725-856785)
chr4 (15-78)||(32494934-32494997)
chr4 (15-76)||(24522485-24522546)
chr4 (214-247)||(36391793-36391826)
chr4 (26-81)||(3735321-3735376)
chr4 (15-78)||(25940069-25940131)
chr4 (15-61)||(7620560-7620606)
chr4 (213-247)||(25125201-25125235)
chr4 (16-73)||(9394135-9394192)
[»] chr3 (8 HSPs)
chr3 (16-140)||(22243415-22243539)
chr3 (33-146)||(22974972-22975085)
chr3 (15-76)||(9121257-9121318)
chr3 (185-242)||(38191736-38191793)
chr3 (212-247)||(11657509-11657544)
chr3 (19-62)||(27720490-27720533)
chr3 (185-247)||(6125693-6125755)
chr3 (205-245)||(13612819-13612859)
[»] chr8 (10 HSPs)
chr8 (31-124)||(5323073-5323166)
chr8 (24-87)||(27766484-27766547)
chr8 (19-63)||(15987827-15987871)
chr8 (16-71)||(17798668-17798723)
chr8 (15-75)||(27287093-27287153)
chr8 (15-63)||(36017134-36017182)
chr8 (185-247)||(29959610-29959672)
chr8 (176-229)||(17648181-17648234)
chr8 (184-240)||(15683282-15683338)
chr8 (25-61)||(17798858-17798894)
[»] chr2 (11 HSPs)
chr2 (15-87)||(36204191-36204263)
chr2 (15-76)||(19378210-19378271)
chr2 (15-87)||(18747286-18747358)
chr2 (19-69)||(19323075-19323125)
chr2 (202-247)||(8757983-8758028)
chr2 (32-61)||(17418847-17418876)
chr2 (202-247)||(25528854-25528899)
chr2 (185-245)||(14739890-14739949)
chr2 (15-63)||(25410641-25410689)
chr2 (29-77)||(31615438-31615486)
chr2 (184-244)||(32036602-32036662)
[»] chr5 (7 HSPs)
chr5 (15-78)||(32718267-32718330)
chr5 (203-247)||(32717521-32717565)
chr5 (81-145)||(43247284-43247346)
chr5 (81-145)||(43253749-43253811)
chr5 (204-247)||(6363288-6363331)
chr5 (201-247)||(11990962-11991008)
chr5 (15-68)||(6363481-6363534)
[»] chr7 (10 HSPs)
chr7 (15-74)||(33440443-33440502)
chr7 (190-247)||(29758848-29758905)
chr7 (176-245)||(38737656-38737725)
chr7 (16-81)||(14107619-14107684)
chr7 (16-81)||(14417576-14417641)
chr7 (88-145)||(21497140-21497197)
chr7 (30-78)||(38737495-38737543)
chr7 (15-78)||(21490553-21490616)
chr7 (15-59)||(7489013-7489057)
chr7 (93-145)||(7489103-7489155)
[»] chr1 (4 HSPs)
chr1 (19-63)||(31969753-31969797)
chr1 (15-78)||(40214129-40214192)
chr1 (33-63)||(32269959-32269989)
chr1 (186-243)||(40214314-40214371)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 7318417 - 7318646
Alignment:
Q  18 atcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttgtgttgtgtttttcccgcttggggtcgacctacatttttgtgt 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7318417 atcacggcattgaagacctttgattagttttaggattaattagaggatgatccacttgtgttgtgtttttcccgcttggggtcgacctacatttttgtgt 7318516  T
Q  118 ggatttattgggtttggtttatgtcccctcaattttcatgtatttcccccnnnnnnnnaataatgcatatgagcatttgataatagattagagatgggta 217  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||        ||||||||||||||||||||||||||||||||||||||||||    
T  7318517 ggatttactgggtttggtttatgtcccctcaattttcatgtattttccccctttttttaataatgcatatgagcatttgataatagattagagatgggta 7318616  T
Q  218 ccaacttagttgggagccactcttttttat 247  Q
    ||||||||||||||||||||||||||||||    
T  7318617 ccaacttagttgggagccactcttttttat 7318646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 22795450 - 22795321
Alignment:
Q  16 caatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttgtgttgtgtttttcccgcttggggtcgacctacatttttgt 115  Q
    |||||| ||||||||| || ||||| ||||||||||||||||||||||||||| ||||| |||||| ||||||||  ||||||| |||||||| |||| |    
T  22795450 caatcatcgcattgaaaacttttgaatagttttaggattaattagaggatgatgcacttatgttgtatttttcccatttggggttgacctacacttttct 22795351  T
Q  116 gtggatttattgggtttggtttatgtcccc 145  Q
    || |||||| |||||| |||||||| ||||    
T  22795350 gtagatttactgggttaggtttatgccccc 22795321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 2900620 - 2900557
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttgtgt 78  Q
    |||||||||||||  |||||||||  ||||||||||||||||||||||| |||| |||||||||    
T  2900620 tcaatcaccgcatcaaagacctttagttagttttaggattaattagaggttgatacacttgtgt 2900557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 30230532 - 30230470
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttgtgt 78  Q
    |||||||||| || |||||||||| |||||||||||| ||||||||||| |||| |||||||||    
T  30230532 tcaatcaccg-atcgaagacctttaattagttttagggttaattagaggttgatacacttgtgt 30230470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 8839205 - 8839133
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttgtgttgtgttttt 87  Q
    |||||||| |||| |||||  ||| ||||||||||||| |||||||||| |||| |||||||||  |||||||    
T  8839205 tcaatcactgcatcgaagatttttaattagttttaggaataattagaggttgatacacttgtgtgttgttttt 8839133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 15139333 - 15139391
Alignment:
Q  185 tatgagcatttgataatagattagagatgggtaccaacttagttgggagccactctttt 243  Q
    ||||| ||||||| || ||||||||| |||| ||||| |||||||| ||||||||||||    
T  15139333 tatgaacatttgacaaaagattagagttggggaccaatttagttggaagccactctttt 15139391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 36392319 - 36392191
Alignment:
Q  18 atcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttgtgttgtgtttttcccgcttggggtcgacctacatttttgtgt 117  Q
    |||||| || ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  36392319 atcaccacactgaagacctatgattacttttaggattaattagaggatgatccacttgtgttgtgtttttcccgtttggggtcgacctacacttttgtgt 36392220  T
Q  118 ggatttattgggtttggtttatgtcccct 146  Q
     ||||||   |||||||||||||||||||    
T  36392219 tgatttaccaggtttggtttatgtcccct 36392191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 19585505 - 19585443
Alignment:
Q  185 tatgagcatttgataatagattagagatgggtaccaacttagttgggagccactcttttttat 247  Q
    ||||||||||||| || |||||||||  ||||||||||||||||||||||| |||||||||||    
T  19585505 tatgagcatttgacaaaagattagagtagggtaccaacttagttgggagcctctcttttttat 19585443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 42586646 - 42586710
Alignment:
Q  17 aatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttgtgttgt 81  Q
    |||||||||| |||||||| | ||||||||||||||||||||||||| ||||| || ||||||||    
T  42586646 aatcaccgcactgaagaccatcgattagttttaggattaattagaggttgatctacctgtgttgt 42586710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 41354134 - 41354072
Alignment:
Q  185 tatgagcatttgataatagattagagatgggtaccaacttagttgggagccactcttttttat 247  Q
    ||||||||||||| |  ||||||||| |||||||||||||||||| ||| |||||||||||||    
T  41354134 tatgagcatttgacagaagattagagttgggtaccaacttagttgcgagtcactcttttttat 41354072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 36756038 - 36756091
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaattagaggatgat 68  Q
    ||||||||||||| ||||| |||| |||||||||||||||||||||||| ||||    
T  36756038 tcaatcaccgcatcgaagatctttaattagttttaggattaattagaggctgat 36756091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 856725 - 856785
Alignment:
Q  185 tatgagcatttgataatagattagagatgggtaccaacttagttgggagccactctttttt 245  Q
    ||||||||||||  |  ||||||||| |||||||||||||||||| |||||||||||||||    
T  856725 tatgagcatttggcagaagattagagttgggtaccaacttagttgcgagccactctttttt 856785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 32494997 - 32494934
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttgtgt 78  Q
    ||||||||| ||||||||||||||  ||| |||||||||||| |||||| |||| |||||||||    
T  32494997 tcaatcaccacattgaagacctttatttaattttaggattaactagaggttgatacacttgtgt 32494934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 24522485 - 24522546
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttgt 76  Q
    |||||||| |||| |||||| ||| |||||||||||||||||||||||| |||  |||||||    
T  24522485 tcaatcacagcatcgaagacttttaattagttttaggattaattagaggttgacacacttgt 24522546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 36391826 - 36391793
Alignment:
Q  214 ggtaccaacttagttgggagccactcttttttat 247  Q
    ||||||||||||||||||||||||||||||||||    
T  36391826 ggtaccaacttagttgggagccactcttttttat 36391793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 3735321 - 3735376
Alignment:
Q  26 attgaagacctttgattagttttaggattaattagaggatgatccacttgtgttgt 81  Q
    |||| |||||| | ||||||||||||||||| ||||||  ||||||||||||||||    
T  3735321 attgtagacctctaattagttttaggattaaatagaggcggatccacttgtgttgt 3735376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 25940131 - 25940069
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttgtgt 78  Q
    |||||||||| || |||||||||| |||||||||||| ||||||||| | |||| |||||||||    
T  25940131 tcaatcaccg-atcgaagacctttaattagttttagggttaattagaagttgatacacttgtgt 25940069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 7620606 - 7620560
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaattaga 61  Q
    ||||||| ||||| |||||||||  ||||||||||||||||||||||    
T  7620606 tcaatcatcgcatagaagaccttcaattagttttaggattaattaga 7620560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 25125235 - 25125201
Alignment:
Q  213 gggtaccaacttagttgggagccactcttttttat 247  Q
    |||||||||||||||||||||| ||||||||||||    
T  25125235 gggtaccaacttagttgggagcaactcttttttat 25125201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 9394192 - 9394135
Alignment:
Q  16 caatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccact 73  Q
    |||||||| || |||| ||||||| ||||||||||||||||||| ||| | |||||||    
T  9394192 caatcaccacaatgaacacctttggttagttttaggattaattaaaggctcatccact 9394135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 22243539 - 22243415
Alignment:
Q  16 caatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttgtgttgtgtttttcccgcttggggtcgacctacatttttgt 115  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| ||||||||| ||  ||| |||||||||||| ||||||    
T  22243539 caatcaccgcattgaagatcttttattagttttaggattaattagaggaggatccacttgtgatgtgttttttccttttgaggtcgacctacaattttgt 22243440  T
Q  116 gtggatttattgggtttggtttatg 140  Q
    ||||||||||||||||  |||||||    
T  22243439 gtggatttattgggttacgtttatg 22243415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 33 - 146
Target Start/End: Original strand, 22974972 - 22975085
Alignment:
Q  33 acctttgattagttttaggattaattagaggatgatccacttgtgttgtgtttttcccgcttggggtcgacctacatttttgtgtggatttattgggttt 132  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||  ||| ||||||| | || ||||||||||||||| ||| ||     
T  22974972 acctttgattaattttaggattaattagaagatgatccacttgtgttgtgttttttccttttgtggtcgacttgcacttttgtgtggatttactggttta 22975071  T
Q  133 ggtttatgtcccct 146  Q
     |||||||||||||    
T  22975072 agtttatgtcccct 22975085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 9121257 - 9121318
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttgt 76  Q
    |||||||| |||| |||||| ||| |||||||||||||||||||||||| |||| |||||||    
T  9121257 tcaatcacagcatcgaagacttttaattagttttaggattaattagaggttgatacacttgt 9121318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 38191736 - 38191793
Alignment:
Q  185 tatgagcatttgataatagattagagatgggtaccaacttagttgggagccactcttt 242  Q
    ||||||||||||| |  ||||||||| ||||||||||||||||||| |||||||||||    
T  38191736 tatgagcatttgacagaagattagagttgggtaccaacttagttggaagccactcttt 38191793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 247
Target Start/End: Complemental strand, 11657544 - 11657509
Alignment:
Q  212 tgggtaccaacttagttgggagccactcttttttat 247  Q
    ||||||||||||||||||| ||||||||||||||||    
T  11657544 tgggtaccaacttagttggaagccactcttttttat 11657509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 27720533 - 27720490
Alignment:
Q  19 tcaccgcattgaagacctttgattagttttaggattaattagag 62  Q
    |||||| |||||||||| ||||||||||||||| ||||||||||    
T  27720533 tcaccgaattgaagaccattgattagttttagggttaattagag 27720490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 6125755 - 6125693
Alignment:
Q  185 tatgagcatttgataatagattagagatgggtaccaacttagttgggagccactcttttttat 247  Q
    ||||||||||||| || | |||||||  || |||| ||||||||| |||||||||||||||||    
T  6125755 tatgagcatttgacaaaatattagagtaggatacctacttagttgtgagccactcttttttat 6125693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 13612859 - 13612819
Alignment:
Q  205 ttagagatgggtaccaacttagttgggagccactctttttt 245  Q
    |||||| ||||||||||||||||||| ||||||||| ||||    
T  13612859 ttagagttgggtaccaacttagttggaagccactctgtttt 13612819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 5323073 - 5323166
Alignment:
Q  31 agacctttgattagttttaggattaattagaggatgatccacttgtgttgtgtttttcccgcttggggtcgacctacatttttgtgtggattta 124  Q
    |||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| |  ||||||| || || | ||||||||| |||||    
T  5323073 agacctttgattcgttttatgattaattagagggtgatccacttgtgttgtgtttttcctgtctggggtcaacttatacttttgtgtgaattta 5323166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 27766547 - 27766484
Alignment:
Q  24 gcattgaagacctttgattagttttaggattaattagaggatgatccacttgtgttgtgttttt 87  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| |||| ||||  |||||||    
T  27766547 gcattgaagacctttaattagttttaggattaattagaggttgatacactcgtgtgttgttttt 27766484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 15987871 - 15987827
Alignment:
Q  19 tcaccgcattgaagacctttgattagttttaggattaattagagg 63  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||    
T  15987871 tcaccgcaatgatgacctttgattagttttaggattaattagagg 15987827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 17798668 - 17798723
Alignment:
Q  16 caatcaccgcattgaagacctttgattagttttaggattaattagaggatgatcca 71  Q
    |||||||| ||||||||||||||||||||||||| |||||| |||| | |||||||    
T  17798668 caatcaccacattgaagacctttgattagttttatgattaaatagatgttgatcca 17798723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 27287093 - 27287153
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttg 75  Q
    |||||||||||||  ||||| ||| ||||||||||| |||||||||||| |||| ||||||    
T  27287093 tcaatcaccgcatcaaagacttttaattagttttagaattaattagaggttgatacacttg 27287153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 36017182 - 36017134
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaattagagg 63  Q
    |||||||||||||  |||||||||  |||||||||||||||||||||||    
T  36017182 tcaatcaccgcatcaaagacctttagttagttttaggattaattagagg 36017134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 29959672 - 29959610
Alignment:
Q  185 tatgagcatttgataatagattagagatgggtaccaacttagttgggagccactcttttttat 247  Q
    ||||||||||||| || |||||||||   |||||||||||| |||||||||  ||||||||||    
T  29959672 tatgagcatttgacaaaagattagagtatggtaccaacttaattgggagcctatcttttttat 29959610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 17648234 - 17648181
Alignment:
Q  176 aataatgcatatgagcatttgataatagattagagatgggtaccaacttagttg 229  Q
    ||||||| ||||||||| ||| ||| |||||||||  |||||||||||||||||    
T  17648234 aataatgtatatgagcaattggtaacagattagagtagggtaccaacttagttg 17648181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 15683338 - 15683282
Alignment:
Q  184 atatgagcatttgataatagattagagatgggtaccaacttagttgggagccactct 240  Q
    |||||| || |||| ||| |||||||| ||||||||||||| |||||||| ||||||    
T  15683338 atatgaacaattgacaattgattagagttgggtaccaacttggttgggagtcactct 15683282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 17798858 - 17798894
Alignment:
Q  25 cattgaagacctttgattagttttaggattaattaga 61  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  17798858 cattgaagacccttgattagttttaggattaaataga 17798894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 36204263 - 36204191
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttgtgttgtgttttt 87  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||| |||| |||||||||  |||||||    
T  36204263 tcaatcaccgcatcgaagacctttaattagttttaggattaattagaggttgatacacttgtgtgttgttttt 36204191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 19378210 - 19378271
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttgt 76  Q
    ||||||||||||| ||||| |||| ||||| |||||||||||||||||| |||| |||||||    
T  19378210 tcaatcaccgcatcgaagatctttaattagctttaggattaattagaggttgatacacttgt 19378271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 18747286 - 18747358
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttgtgttgtgttttt 87  Q
    ||||||||||||| |||||||| | ||| |||||||||||||||||||| |||| ||||| |||  |||||||    
T  18747286 tcaatcaccgcatcgaagacctctaatttgttttaggattaattagaggttgatacacttatgtgttgttttt 18747358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 19323125 - 19323075
Alignment:
Q  19 tcaccgcattgaagacctttgattagttttaggattaattagaggatgatc 69  Q
    |||| ||||||||||||||| | |||||||||||||||||||||| |||||    
T  19323125 tcactgcattgaagacctttaagtagttttaggattaattagaggctgatc 19323075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 8757983 - 8758028
Alignment:
Q  202 agattagagatgggtaccaacttagttgggagccactcttttttat 247  Q
    ||||||||| || |||||||||||||||||||| ||||| ||||||    
T  8757983 agattagagttgagtaccaacttagttgggagctactctcttttat 8758028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 17418876 - 17418847
Alignment:
Q  32 gacctttgattagttttaggattaattaga 61  Q
    ||||||||||||||||||||||||||||||    
T  17418876 gacctttgattagttttaggattaattaga 17418847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 25528854 - 25528899
Alignment:
Q  202 agattagagatgggtaccaacttagttgggagccactcttttttat 247  Q
    ||||||||| |||||  ||||||||||| |||||||||||||||||    
T  25528854 agattagagttgggtctcaacttagttgcgagccactcttttttat 25528899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 14739890 - 14739949
Alignment:
Q  185 tatgagcatttgataatagattagagatgggtaccaacttagttgggagccactctttttt 245  Q
    |||||||||||||||  ||||||||| ||| ||||||||| ||| | ||||||||||||||    
T  14739890 tatgagcatttgatagaagattagagttggataccaactt-gttcgaagccactctttttt 14739949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 25410689 - 25410641
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaattagagg 63  Q
    ||||||| |||||  ||||||||| ||| ||||||||||||||||||||    
T  25410689 tcaatcatcgcatcaaagacctttaattggttttaggattaattagagg 25410641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 31615486 - 31615438
Alignment:
Q  29 gaagacctttgattagttttaggattaattagaggatgatccacttgtg 77  Q
    |||||||||| ||||||| |||||||||||||||| || | ||||||||    
T  31615486 gaagacctttaattagttctaggattaattagaggttgttacacttgtg 31615438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 32036602 - 32036662
Alignment:
Q  184 atatgagcatttgataatagattagagatgggtaccaacttagttgggagccactcttttt 244  Q
    ||||||||||||| ||  ||||||||| ||  ||||||| ||||| |||||||||||||||    
T  32036602 atatgagcatttggtagaagattagagttgaataccaacctagttaggagccactcttttt 32036662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 32718330 - 32718267
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttgtgt 78  Q
    ||||||||||||  |||||||||| |||||||||||||||||||||||| |||| |||||||||    
T  32718330 tcaatcaccgcaccgaagacctttaattagttttaggattaattagaggttgatacacttgtgt 32718267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 32717565 - 32717521
Alignment:
Q  203 gattagagatgggtaccaacttagttgggagccactcttttttat 247  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  32717565 gattagagtagggtaccaacttagttgggagccactcttttttat 32717521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 43247346 - 43247284
Alignment:
Q  81 tgtttttcccgcttggggtcgacctacatttttgtgtggatttattgggtttggtttatgtcccc 145  Q
    ||||||||||||||||| |||||||||| |||||||||| |||| |||||| |||||||||||||    
T  43247346 tgtttttcccgcttggg-tcgacctacacttttgtgtgg-tttactgggttaggtttatgtcccc 43247284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 43253811 - 43253749
Alignment:
Q  81 tgtttttcccgcttggggtcgacctacatttttgtgtggatttattgggtttggtttatgtcccc 145  Q
    ||||||||||||||||| |||||||||| |||||||||| |||| |||||| |||||||||||||    
T  43253811 tgtttttcccgcttggg-tcgacctacacttttgtgtgg-tttactgggttaggtttatgtcccc 43253749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 6363331 - 6363288
Alignment:
Q  204 attagagatgggtaccaacttagttgggagccactcttttttat 247  Q
    |||||||  |||||||||||||||||||||||||||||||||||    
T  6363331 attagagtcgggtaccaacttagttgggagccactcttttttat 6363288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 11990962 - 11991008
Alignment:
Q  201 tagattagagatgggtaccaacttagttgggagccactcttttttat 247  Q
    |||||||||| ||| ||||||||||||||||||||||||| ||||||    
T  11990962 tagattagagttggataccaacttagttgggagccactctattttat 11991008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 6363534 - 6363481
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaattagaggatgat 68  Q
    ||||||||||||| ||| |||||| |||||||||| ||||||||| ||| ||||    
T  6363534 tcaatcaccgcatcgaaaacctttaattagttttatgattaattataggttgat 6363481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 33440443 - 33440502
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccactt 74  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||||||| |||| |||||    
T  33440443 tcaatcaccgcatcgaagacctttagttagttttaggattaattagaggttgatacactt 33440502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 29758848 - 29758905
Alignment:
Q  190 gcatttgataatagattagagatgggtaccaacttagttgggagccactcttttttat 247  Q
    |||||||| | |||||||||| ||||||||||||||||| ||||||||||| ||||||    
T  29758848 gcatttgacactagattagagttgggtaccaacttagtttggagccactctattttat 29758905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 38737656 - 38737725
Alignment:
Q  176 aataatgcatatgagcatttgataatagattagagatgggtaccaacttagttgggagccactctttttt 245  Q
    |||||| | ||||||||||||| || |||||||||  ||||||||||||| ||| |||||||||||||||    
T  38737656 aataatacttatgagcatttgacaaaagattagagtagggtaccaacttaattgagagccactctttttt 38737725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 14107619 - 14107684
Alignment:
Q  16 caatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttgtgttgt 81  Q
    ||||||||||| |||| |||||||||||||||| |||||||||| ||| |  |||||| |||||||    
T  14107619 caatcaccgcaatgaacacctttgattagtttttggattaattaaaggctcctccactagtgttgt 14107684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 14417576 - 14417641
Alignment:
Q  16 caatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttgtgttgt 81  Q
    ||||||||||| |||| |||||||||||||||| |||||||||| ||| |  |||||| |||||||    
T  14417576 caatcaccgcaatgaacacctttgattagtttttggattaattaaaggctcctccactagtgttgt 14417641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 21497140 - 21497197
Alignment:
Q  88 cccgcttggggtcgacctacatttttgtgtggatttattgggtttggtttatgtcccc 145  Q
    |||| ||||||||||| ||||||||||| ||| ||||| ||||| |||||||||||||    
T  21497140 cccgtttggggtcgacatacatttttgtttggttttatagggttaggtttatgtcccc 21497197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 38737495 - 38737543
Alignment:
Q  30 aagacctttgattagttttaggattaattagaggatgatccacttgtgt 78  Q
    ||||||||| |||||||||| ||||||||||||| |||| |||||||||    
T  38737495 aagacctttaattagttttaagattaattagaggttgatacacttgtgt 38737543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 21490553 - 21490616
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttgtgt 78  Q
    ||||||||||||| ||||||||||  ||| ||||||||||||| ||||| |||| ||| |||||    
T  21490553 tcaatcaccgcatcgaagacctttagttacttttaggattaatcagaggttgatacacatgtgt 21490616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 7489013 - 7489057
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaatta 59  Q
    ||||||||||||   ||||||||| ||||||||||||||||||||    
T  7489013 tcaatcaccgcacaaaagacctttaattagttttaggattaatta 7489057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 7489103 - 7489155
Alignment:
Q  93 ttggggtcgacctacatttttgtgtggatttattgggtttggtttatgtcccc 145  Q
    ||||||||||| |||| | |||||||| |||| ||||||| ||||||||||||    
T  7489103 ttggggtcgacttacactcttgtgtggttttactgggtttagtttatgtcccc 7489155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 31969753 - 31969797
Alignment:
Q  19 tcaccgcattgaagacctttgattagttttaggattaattagagg 63  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||    
T  31969753 tcaccgcattgtagacctttgattagttttaggattaaatagagg 31969797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 40214129 - 40214192
Alignment:
Q  15 tcaatcaccgcattgaagacctttgattagttttaggattaattagaggatgatccacttgtgt 78  Q
    ||||||||||||| ||||| ||||  ||||||||||||||||||  ||| |||| |||||||||    
T  40214129 tcaatcaccgcatcgaagatctttatttagttttaggattaattcaaggttgatacacttgtgt 40214192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 32269959 - 32269989
Alignment:
Q  33 acctttgattagttttaggattaattagagg 63  Q
    |||||||||||||||||||||||||||||||    
T  32269959 acctttgattagttttaggattaattagagg 32269989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 40214314 - 40214371
Alignment:
Q  186 atgagcatttgataatagattagagatgggtaccaacttagttgggagccactctttt 243  Q
    |||||||||||| || |||||||||  ||||||||||||||||| ||| | |||||||    
T  40214314 atgagcatttgacaaaagattagagtagggtaccaacttagttgagagtctctctttt 40214371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University