View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18120_low_2 (Length: 561)
Name: NF18120_low_2
Description: NF18120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18120_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 176 - 525
Target Start/End: Original strand, 49245437 - 49245769
Alignment:
| Q |
176 |
ctaaagaatgaatgcatcaaagttggttaagcgaagaagaaaggcccttcattgttccaatcattatttaatggaccatatagatattgttcttcacttt |
275 |
Q |
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| T |
49245437 |
ctaaagaatgaatgcatcaaagttggttaagcgaagaagaaaggcccttcattgttccaatcattattgaatggaccatatagatattgttcttcacttt |
49245536 |
T |
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| Q |
276 |
ttcttcttattatatttatccagaattacaaatttttaccatccaattcgggacagtgaatatgttttccagttttattttacttctgaaaatttgagtc |
375 |
Q |
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| T |
49245537 |
ttcttcttattatatttatccagaattacaaatttttaccatccaattcgggacagtgaatatgttttccagttttattttacttctg------------ |
49245624 |
T |
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| Q |
376 |
atgtaaaatagtgaaccaagttttgaatttaggctccttnnnnnnngttcttatttatttatttatttcatattagtaggaaaacattatagctacattt |
475 |
Q |
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| T |
49245625 |
----aaaatagtgaaccaagttttgaatttaggttccttaaaaaaagttc----ttatttatttatttcatattagtaggaaaacattataactacattt |
49245716 |
T |
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| Q |
476 |
cctt--aaaaataggcgttctttttcacttataaaat-aaaaattgtgtagtt |
525 |
Q |
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| T |
49245717 |
ccttaaaaaaataggcgttctttttcacctataaaataaaaaattgtgtagtt |
49245769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 49245332 - 49245379
Alignment:
| Q |
68 |
tgtatgcatattgatagttatgagcaaagaaattaattggtgttgaaa |
115 |
Q |
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| T |
49245332 |
tgtatgcatattgatagttatgagcaaagaaattaattggtgttgaaa |
49245379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 49245261 - 49245291
Alignment:
| Q |
19 |
gtgacatggtacatatattggtggtatacat |
49 |
Q |
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| T |
49245261 |
gtgacatggtacatatattggtggtatacat |
49245291 |
T |
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