View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18120_low_20 (Length: 247)
Name: NF18120_low_20
Description: NF18120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18120_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 29662816 - 29663018
Alignment:
| Q |
18 |
tgttctgttccaagttgttttcaatgttgtgaccttcaagattttcaaggttgtccatatgaatatgatgttgaagcatggggttttcatgagaattggt |
117 |
Q |
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| T |
29662816 |
tgttctgttccaagttgttttcaatgttgtgaccttcaagattttcaaggttgtccatatgaata---------agcatggggttttcatgagaattggt |
29662906 |
T |
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| Q |
118 |
ccaattaagaatgcttatccctcaagtagcaagatgctgggttacatgtacattctcggtgaaaaccaaatctccatgaatcaaaaaatgcccgaaattg |
217 |
Q |
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| T |
29662907 |
ccaattaagaatgcttatccctcaagtagcaagatgctgggttacatgtacattctcggtgaaaaccaaatctccatgaatcaaaaaatgcccgaaattg |
29663006 |
T |
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| Q |
218 |
cgaaggatgtca |
229 |
Q |
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|||||||||||| |
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| T |
29663007 |
cgaaggatgtca |
29663018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 229
Target Start/End: Complemental strand, 33201579 - 33201439
Alignment:
| Q |
89 |
tgaagcatggggttttcatgagaattggtccaattaagaatgcttatccctcaagtagcaagatgctgggttacatgtacattctcggtgaaaaccaaat |
188 |
Q |
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| T |
33201579 |
tgaagcatggggttttcatgcgaattggtccaatagagaatgcctatctctcaagtagcaagatgcctgggtatgtgtatgttctcggtgaaaacccata |
33201480 |
T |
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| Q |
189 |
ctccatgaatcaaaaaatgcccgaaattgcgaaggatgtca |
229 |
Q |
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| T |
33201479 |
tttcatgaatcagaaaatgcccaagattgccaaagatgtca |
33201439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 33201662 - 33201613
Alignment:
| Q |
18 |
tgttctgttccaagttgttttcaatgttgtgaccttcaagattttcaagg |
67 |
Q |
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| T |
33201662 |
tgttctgttccctgttgttttcaatgccgtgaccttcaagattttcaagg |
33201613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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