View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18120_low_23 (Length: 211)

Name: NF18120_low_23
Description: NF18120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18120_low_23
NF18120_low_23
[»] chr5 (19 HSPs)
chr5 (3-194)||(40147034-40147226)
chr5 (4-194)||(27015305-27015496)
chr5 (3-194)||(213242-213430)
chr5 (3-186)||(38746786-38746970)
chr5 (3-186)||(5057828-5058012)
chr5 (3-194)||(28278089-28278281)
chr5 (3-195)||(27637817-27638011)
chr5 (3-170)||(4160430-4160596)
chr5 (10-180)||(316552-316720)
chr5 (3-122)||(16641144-16641263)
chr5 (58-180)||(33906288-33906410)
chr5 (10-148)||(14689622-14689758)
chr5 (11-170)||(35615968-35616125)
chr5 (30-158)||(21205883-21206011)
chr5 (11-91)||(8019464-8019542)
chr5 (129-180)||(16642208-16642260)
chr5 (126-180)||(30793025-30793080)
chr5 (126-180)||(30802727-30802782)
chr5 (125-178)||(10055032-10055086)
[»] chr2 (11 HSPs)
chr2 (3-194)||(1631935-1632127)
chr2 (3-194)||(35447087-35447279)
chr2 (3-194)||(42288313-42288504)
chr2 (3-180)||(45726716-45726894)
chr2 (3-180)||(17450377-17450555)
chr2 (3-194)||(24397830-24398018)
chr2 (14-175)||(30218250-30218410)
chr2 (18-194)||(33647942-33648118)
chr2 (14-161)||(42261826-42261971)
chr2 (109-170)||(7451097-7451158)
chr2 (20-124)||(43730991-43731093)
[»] chr1 (31 HSPs)
chr1 (3-195)||(34603348-34603540)
chr1 (3-194)||(37879114-37879306)
chr1 (3-194)||(7482435-7482625)
chr1 (3-194)||(37168070-37168262)
chr1 (3-194)||(42298178-42298370)
chr1 (3-194)||(11348471-11348663)
chr1 (3-194)||(37033276-37033468)
chr1 (3-195)||(13547292-13547485)
chr1 (3-195)||(13549203-13549396)
chr1 (3-194)||(193385-193576)
chr1 (3-193)||(29136022-29136212)
chr1 (4-194)||(47114945-47115135)
chr1 (3-194)||(19754264-19754459)
chr1 (17-195)||(34602557-34602735)
chr1 (3-192)||(31925910-31926099)
chr1 (3-194)||(28242162-28242353)
chr1 (3-194)||(19752459-19752650)
chr1 (6-177)||(47255546-47255716)
chr1 (14-180)||(41135607-41135773)
chr1 (10-150)||(22079140-22079278)
chr1 (1-161)||(6808253-6808412)
chr1 (38-180)||(12318720-12318862)
chr1 (3-121)||(25651931-25652050)
chr1 (11-186)||(16216709-16216881)
chr1 (14-150)||(3331369-3331505)
chr1 (58-170)||(9109660-9109773)
chr1 (49-185)||(4535717-4535861)
chr1 (48-89)||(6068471-6068512)
chr1 (39-129)||(27558454-27558543)
chr1 (27-82)||(10157501-10157555)
chr1 (11-123)||(33775757-33775866)
[»] chr7 (22 HSPs)
chr7 (3-194)||(48599537-48599729)
chr7 (3-194)||(2361175-2361366)
chr7 (3-186)||(2390063-2390247)
chr7 (3-194)||(6431744-6431936)
chr7 (3-194)||(34310919-34311111)
chr7 (3-180)||(4512593-4512771)
chr7 (3-194)||(29608514-29608701)
chr7 (3-194)||(3258769-3258959)
chr7 (3-180)||(4508909-4509087)
chr7 (3-180)||(4510751-4510929)
chr7 (3-180)||(8359520-8359699)
chr7 (3-194)||(6360115-6360307)
chr7 (3-179)||(22269761-22269937)
chr7 (3-179)||(22328601-22328779)
chr7 (10-124)||(1360364-1360479)
chr7 (51-123)||(5116479-5116551)
chr7 (52-152)||(43363667-43363766)
chr7 (3-150)||(23794030-23794176)
chr7 (49-123)||(22552683-22552757)
chr7 (4-80)||(2579030-2579105)
chr7 (152-194)||(32358189-32358231)
chr7 (10-89)||(37545121-37545199)
[»] chr6 (14 HSPs)
chr6 (3-194)||(5043401-5043592)
chr6 (1-194)||(17762760-17762956)
chr6 (3-194)||(603283-603475)
chr6 (3-194)||(21593439-21593629)
chr6 (3-194)||(2973142-2973334)
chr6 (3-194)||(3808912-3809103)
chr6 (3-193)||(26830327-26830518)
chr6 (1-193)||(22425029-22425219)
chr6 (54-194)||(17757855-17757998)
chr6 (10-129)||(5741001-5741120)
chr6 (103-194)||(26800544-26800634)
chr6 (10-78)||(25073457-25073525)
chr6 (3-123)||(11660452-11660571)
chr6 (75-161)||(25072991-25073076)
[»] chr3 (26 HSPs)
chr3 (3-194)||(6095802-6095994)
chr3 (1-190)||(49199671-49199862)
chr3 (3-194)||(34490986-34491178)
chr3 (3-194)||(46860244-46860437)
chr3 (3-194)||(30235898-30236090)
chr3 (3-194)||(54593478-54593669)
chr3 (3-168)||(4569750-4569916)
chr3 (3-195)||(36018623-36018816)
chr3 (3-194)||(40913111-40913304)
chr3 (3-194)||(47304025-47304216)
chr3 (6-195)||(55302171-55302361)
chr3 (3-194)||(41819727-41819916)
chr3 (3-194)||(5434081-5434273)
chr3 (42-194)||(43402032-43402185)
chr3 (42-194)||(43403975-43404128)
chr3 (14-180)||(1683274-1683440)
chr3 (16-161)||(34795676-34795819)
chr3 (10-109)||(26323286-26323385)
chr3 (95-184)||(28074399-28074488)
chr3 (10-180)||(20937444-20937613)
chr3 (10-93)||(39127421-39127503)
chr3 (72-171)||(36796206-36796307)
chr3 (3-55)||(31340404-31340456)
chr3 (38-161)||(35138944-35139067)
chr3 (14-78)||(36796686-36796749)
chr3 (107-161)||(26323821-26323874)
[»] chr4 (34 HSPs)
chr4 (3-187)||(50674049-50674234)
chr4 (3-194)||(54882793-54882985)
chr4 (3-194)||(379152-379343)
chr4 (3-194)||(46703274-46703464)
chr4 (3-194)||(8665180-8665372)
chr4 (3-194)||(55085568-55085760)
chr4 (3-186)||(35662223-35662405)
chr4 (6-194)||(50262904-50263093)
chr4 (11-194)||(26364038-26364222)
chr4 (3-170)||(41964212-41964379)
chr4 (3-185)||(12073175-12073357)
chr4 (3-194)||(8647911-8648103)
chr4 (3-194)||(6655729-6655921)
chr4 (3-180)||(33989649-33989826)
chr4 (72-195)||(40630756-40630879)
chr4 (6-165)||(12119341-12119499)
chr4 (4-194)||(27417165-27417346)
chr4 (3-193)||(2209482-2209678)
chr4 (10-176)||(41961198-41961368)
chr4 (74-194)||(46569821-46569941)
chr4 (40-186)||(34112392-34112539)
chr4 (26-132)||(3785926-3786030)
chr4 (14-161)||(33089705-33089841)
chr4 (1-161)||(26699647-26699807)
chr4 (11-157)||(22882964-22883110)
chr4 (11-157)||(22934628-22934774)
chr4 (3-72)||(40632341-40632410)
chr4 (10-122)||(32091324-32091435)
chr4 (14-161)||(35370553-35370698)
chr4 (3-49)||(41639345-41639391)
chr4 (10-123)||(35369652-35369763)
chr4 (57-185)||(22629147-22629275)
chr4 (11-154)||(25723433-25723571)
chr4 (74-154)||(6200139-6200218)
[»] scaffold0466 (1 HSPs)
scaffold0466 (3-194)||(7101-7292)
[»] chr8 (17 HSPs)
chr8 (4-192)||(40328554-40328743)
chr8 (3-190)||(11383763-11383951)
chr8 (3-194)||(40221518-40221710)
chr8 (1-194)||(42435192-42435386)
chr8 (3-170)||(4283321-4283489)
chr8 (3-194)||(44353565-44353757)
chr8 (3-122)||(18655246-18655365)
chr8 (27-161)||(40585532-40585664)
chr8 (78-187)||(9633816-9633925)
chr8 (111-194)||(22976307-22976389)
chr8 (62-179)||(3846082-3846199)
chr8 (43-123)||(33655548-33655628)
chr8 (14-144)||(10020272-10020398)
chr8 (102-182)||(2999823-2999904)
chr8 (10-123)||(10240004-10240113)
chr8 (3-123)||(10101356-10101475)
chr8 (62-186)||(3817596-3817720)
[»] scaffold0014 (1 HSPs)
scaffold0014 (3-194)||(80486-80678)
[»] scaffold0286 (1 HSPs)
scaffold0286 (3-194)||(11331-11522)
[»] scaffold0176 (1 HSPs)
scaffold0176 (1-194)||(18204-18396)
[»] scaffold0002 (1 HSPs)
scaffold0002 (14-161)||(490661-490806)
[»] scaffold0197 (1 HSPs)
scaffold0197 (11-122)||(1609-1729)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 40147226 - 40147034
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  40147226 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaag 40147127  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  40147126 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaaccattttcccaagagc 40147034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 4 - 194
Target Start/End: Complemental strand, 27015496 - 27015305
Alignment:
Q  4 tgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaaga 102  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  27015496 tgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggttttacaaga 27015397  T
Q  103 ctcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||    
T  27015396 ctcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgattcttccccaaaaggcaccaacccttttcacaagagc 27015305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 213430 - 213242
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||    |||||||||||||||| |||||||||||||||||||||||||||||    
T  213430 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaacc----cttagcctttgatttcactaaggatcttctcttttggtttcacaag 213335  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |||||||    
T  213334 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttctccaaaaggcaccaacccttttcccaagagc 213242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 186
Target Start/End: Complemental strand, 38746970 - 38746786
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcc-taaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||    
T  38746970 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaacccttagcctttgatttcaataaggatcttctcttttggtttcacaag 38746871  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttc 186  Q
    ||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||    
T  38746870 actcacccaagttgctcgcaaatgactctccactcacgtgtttcccaaccccatgaatcttccccaaaaggcaccaacccttttc 38746786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 3 - 186
Target Start/End: Complemental strand, 5058012 - 5057828
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||    
T  5058012 gtgtttacaattgttttccaactctagaatctaacccccaaaagagaaccaacccttagcctttgattttactaaggatcttctcttttggtttcacaag 5057913  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttc 186  Q
    |||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||    
T  5057912 actcgcccaagttgctcacaaatgactctccactcatgtgttttccaaccccatgaatcttccccaaaaggcaccaacctttttc 5057828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 28278281 - 28278089
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||| ||||||||| ||||  ||||||||||||| |||||||||    
T  28278281 gtgtttacaattgtttcccaactctagaatctaacccctaaaagagagccaacccttagcatttgatttcactaacaatcttctcttttgatttcacaag 28278182  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||    
T  28278181 actcacccaagttgctcacaatagtctctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaacccttttcccaagagc 28278089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 3 - 195
Target Start/End: Original strand, 27637817 - 27638011
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctc--ttttggtttcaca 99  Q
    ||||| |||||||||||||||| |||| ||||||||||||||||||||| |||| |||| |||||||||| ||||||||||||||  |||||||||||||    
T  27637817 gtgttcacaattgtttcccaactctagcatctaacccccaaaagagaacaaacttttagtctttgatttcactaaggatcttctctcttttggtttcaca 27637916  T
Q  100 agactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagct 195  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  27637917 agactcacccaagttgctcataaaagactcttcactcatgtgtttcctaaccccatgaatctt-cccaaaatgcaccaacccttttcccaagagct 27638011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 4160596 - 4160430
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaaga 102  Q
    ||||||||||||||||| |||| || ||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||| |||||    
T  4160596 gtgtttacaattgtttctcaactct-gaatctaacccccaaaagagaaccaacccttagcctttaattacctaaggatcttctcttttggtttcccaaga 4160498  T
Q  103 ctcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaa 170  Q
     |||||| ||||||||||||| ||||||||||| | ||| |||||||||| |||||||| |||||||||    
T  4160497 ttcaccctagttgctcacaaatgactctccacttacgtg-ttcccaaccctatgaatctctccccaaaa 4160430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 316720 - 316552
Alignment:
Q  10 caattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcaccc 109  Q
    ||||||||| |||||  || |||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| || ||||| ||| ||    
T  316720 caattgttttccaactttaaaatctaacccccaaaagagaaccaacccttagcctttgatttcct-aggattttctcttttggtctcccaagattca-cc 316623  T
Q  110 aagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaatgcaccaacc 180  Q
    ||||||||||| ||||||||||   | |||||||||||||||  |||||||| ||||||||| |||||||||    
T  316622 aagttgctcac-aaagactctcttttgatgtgtttcccaaccttatgaatctctccccaaaaggcaccaacc 316552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 16641144 - 16641263
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaaga 102  Q
    |||||||||| |||| |||||| ||||||||||| ||||||||||||||||||  ||||||||||||||  |||| ||||||||||||||||||||||||    
T  16641144 gtgtttacaaatgttccccaactctagaatctaatccccaaaagagaaccaacctttagcctttgattttttaagtatcttctcttttggtttcacaaga 16641243  T
Q  103 ctcacccaagttgctcacaa 122  Q
    |||||| |||||| ||||||    
T  16641244 ctcaccaaagttgttcacaa 16641263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 58 - 180
Target Start/End: Original strand, 33906288 - 33906410
Alignment:
Q  58 ttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatga 157  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||| ||||||  | ||||||||| |||||||||||    
T  33906288 ttagcctttgatttcctaaggatcttctcttttggtttcccaagactcacccaagttgctcac-taagtctctcctttgatgtgtttctcaaccccatga 33906386  T
Q  158 atct-tccccaaaatgcaccaacc 180  Q
    |||| ||||||||| |||||||||    
T  33906387 atctctccccaaaaggcaccaacc 33906410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 14689622 - 14689758
Alignment:
Q  10 caattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcaccc 109  Q
    |||||||||| |||| |||||||||| |||| |||||||||||||| | ||||||||||||| ||||||||||| ||||||||| || ||||||| | |     
T  14689622 caattgtttcacaactctagaatctatcccc-aaaagagaaccaacccctagcctttgattttctaaggatcttttcttttggtgtcccaagacttatct 14689720  T
Q  110 aagttgctcacaaaagactctccactcatgtgtttccca 148  Q
    ||||||||||| ||| |||||||  | ||||||||||||    
T  14689721 aagttgctcac-aaatactctccttttatgtgtttccca 14689758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 35616125 - 35615968
Alignment:
Q  11 aattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcaccca 110  Q
    |||||||||| ||| ||||||||||||| | ||||||||| ||||||| ||||||||||||| | | ||||||| ||||||||||| ||||||||||| |    
T  35616125 aattgtttccaaactctagaatctaaccac-aaaagagaatcaactct-agcctttgatttcttgatgatcttcgcttttggtttcccaagactcaccaa 35616028  T
Q  111 agttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaa 170  Q
    ||||| | || ||||||||| |  | ||||||||| |||| |||||||||| |||||||||    
T  35616027 agttgattac-aaagactcttcttttatgtgtttctcaactccatgaatctctccccaaaa 35615968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 21205883 - 21206011
Alignment:
Q  30 aatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactc 129  Q
    |||||||||| ||||||||||||||  ||||| |||||||||| ||||| ||||| ||||| |||||  || | |||||||| || || ||||| |||||    
T  21205883 aatctaaccctcaaaagagaaccaatccttagtctttgatttcataaggttcttcacttttagtttcctaaaattcacccaaatttctgacaaatgactc 21205982  T
Q  130 tccactcatgtgtttcccaaccccatgaa 158  Q
      ||||||||||||||||||||| |||||    
T  21205983 ctcactcatgtgtttcccaaccctatgaa 21206011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 8019542 - 8019464
Alignment:
Q  11 aattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttg 91  Q
    |||| |||||||||  ||||||||||||||||||| | ||||||| ||||||||||||||| |||||||||||| ||||||    
T  8019542 aattatttcccaactatagaatctaacccccaaaa-ataaccaac-cttagcctttgattttctaaggatcttcacttttg 8019464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 16642208 - 16642260
Alignment:
Q  129 ctccactcatgtgtttcccaaccccatgaatct-tccccaaaatgcaccaacc 180  Q
    |||||||||||||||||| |||||||||||||| ||||||||| |||||||||    
T  16642208 ctccactcatgtgtttcctaaccccatgaatctgtccccaaaaggcaccaacc 16642260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 30793080 - 30793025
Alignment:
Q  126 actctccactcatgtgtttcccaaccccatgaatct-tccccaaaatgcaccaacc 180  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||| |||||||||    
T  30793080 actctctactcatgtgtttcccaaccccatgaatatctccccaaaaggcaccaacc 30793025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 30802782 - 30802727
Alignment:
Q  126 actctccactcatgtgtttcccaaccccatgaatct-tccccaaaatgcaccaacc 180  Q
    ||||||||||||||||||| | |||||||||||||| ||||||||| |||| ||||    
T  30802782 actctccactcatgtgttttctaaccccatgaatctctccccaaaaggcacaaacc 30802727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 10055032 - 10055086
Alignment:
Q  125 gactctccactcatgtgtttcccaaccccatgaatct-tccccaaaatgcaccaa 178  Q
    ||||||| ||||||||||||||||||||| ||||||| |||||| || |||||||    
T  10055032 gactctctactcatgtgtttcccaaccccgtgaatctctccccataaggcaccaa 10055086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 1631935 - 1632127
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  1631935 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaag 1632034  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||    
T  1632035 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaagacaccaacccttttcacaagagc 1632127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 35447087 - 35447279
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| |||||    
T  35447087 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaacccttagcctttgatttcactaagtatcttctcttttggttttacaag 35447186  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||    
T  35447187 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatctttcccaaaaggcaccaacccttttcacaagagc 35447279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 42288313 - 42288504
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  42288313 gtgtttacaattgtttcccaactctagaatctaaacccgaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaag 42288412  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||||    
T  42288413 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatctt-cccaaaaggcaccaacccttttcccaagagc 42288504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 3 - 180
Target Start/End: Complemental strand, 45726894 - 45726716
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |    
T  45726894 gtgtttacaattgtttcctaaccctagaatctaacccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacatg 45726795  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaacc 180  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  45726794 actcacccaagttgctcacaaatgactctccactcatgtgtttccaaaccccatgaatcttccccaaaaggcaccaacc 45726716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 180
Target Start/End: Complemental strand, 17450555 - 17450377
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaaga 102  Q
    |||||| ||| ||||| ||||| |||||||| ||||||||| |||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  17450555 gtgtttgcaaatgtttgccaactctagaatccaacccccaatagagaatcaacccttagcctttgatttcctaatgatcttctcttttggtttcacaaga 17450456  T
Q  103 ctcacccaagttgctcacaaaagact-ctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaacc 180  Q
    |||||||||||| |||||||  |||| || | ||||||||||||||| ||||||||||||| | ||||  |||||||||    
T  17450455 ctcacccaagtttctcacaattgactccttcgctcatgtgtttcccatccccatgaatctttcacaaagggcaccaacc 17450377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 24398018 - 24397830
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaaga 102  Q
    |||||||||||||||||||||| ||| |||||||||||||||   |||||||| |||||| ||||| || |||||||| |||||||||||||||||||||    
T  24398018 gtgtttacaattgtttcccaactctataatctaacccccaaa---gaaccaacccttagc-tttgactttctaaggatattctcttttggtttcacaaga 24397923  T
Q  103 ctcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaatgcaccaaccattttcacaagagc 194  Q
    || |||||| ||| ||||||| |||||||||||||||||||| ||| ||| |||| ||| |||| |||| ||||||||| ||||| |||||||    
T  24397922 ctaacccaaattggtcacaaatgactctccactcatgtgtttaccagcccgatgagtctctccctaaaaggcaccaacccttttcccaagagc 24397830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 30218250 - 30218410
Alignment:
Q  14 tgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagt 113  Q
    ||||||||||| |||||  ||||||||||||||||||||||   ||||| ||||||||||||||||||  | ||||||||||| |||||||||| |||||    
T  30218250 tgtttcccaactctagagcctaacccccaaaagagaaccaatatttagcttttgatttcctaaggatc-ccccttttggtttcgcaagactcactcaagt 30218348  T
Q  114 tgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaatgcac 175  Q
    ||||||| ||||| |||||  |  |||||||||||||||||||||||| ||||||||| ||||    
T  30218349 tgctcac-aaagattctcctttggtgtgtttcccaaccccatgaatctctccccaaaaggcac 30218410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 33648118 - 33647942
Alignment:
Q  18 tcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcc-taaggatcttctcttttggtttcacaagactcacccaagttgc 116  Q
    ||||||| |||||||||||||||||||||| ||  ||| |||   ||||||||||| |||||||||||||||||||||| | ||||||| || |||| ||    
T  33648118 tcccaactctagaatctaacccccaaaagataattaacccttg--ctttgatttccctaaggatcttctcttttggttttataagactcgcctaagtagc 33648021  T
Q  117 tcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaatgcaccaaccattttcacaagagc 194  Q
    | ||||| ||||||| |||||| ||||| |||||| | ||||||| ||| ||||| ||||||||| ||||| |||||||    
T  33648020 taacaaatgactctctactcatatgttttccaacctcgtgaatctctcctcaaaaggcaccaacccttttcccaagagc 33647942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 42261826 - 42261971
Alignment:
Q  14 tgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagt 113  Q
    ||||||||||| ||||| ||||||||| ||||| |||||||  | |||| ||||||||||||| ||| | |||||||||| ||  ||||||| |||||||    
T  42261826 tgtttcccaactctagattctaacccctaaaag-gaaccaatccgtagcttttgatttcctaatgatatactcttttggtctcgtaagactcgcccaagt 42261924  T
Q  114 tgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct 161  Q
    |||||| |||| |||||||  | ||||||||||||| |||||||||||    
T  42261925 tgctcataaaa-actctcctttgatgtgtttcccaatcccatgaatct 42261971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 7451158 - 7451097
Alignment:
Q  109 caagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaa 170  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||| ||||||| ||||||    
T  7451158 caagttgctcacaaatgactctccactcatgtgttttccaaccccataaatcttctccaaaa 7451097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 43731093 - 43730991
Alignment:
Q  20 ccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctca 119  Q
    ||||| ||||||| ||||||| |||||| |||||||  |||| ||||||||||||| |||| |||| |||||||||| ||||| |||||||| |||||||    
T  43731093 ccaactctagaatttaacccc-aaaaga-aaccaacctttagactttgatttcctacggatattctattttggtttcccaagattcacccaaattgctca 43730996  T
Q  120 caaaa 124  Q
    |||||    
T  43730995 caaaa 43730991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 34603540 - 34603348
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaaga 102  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34603540 gtgtttacaattgtttcccaactctagaatctaacctccaaaagagaaccaacccttagcctttgatttcctaaggatcttctcttttggtttcacaaga 34603441  T
Q  103 ctcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagct 195  Q
    |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| ||||||||    
T  34603440 ctcacccaagttgctcacaaaagacttttcactcatgtgttttccaaccccatgaatcttccccaaaaggcaccaacccttttcccaagagct 34603348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 37879114 - 37879306
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||| |||||||||    
T  37879114 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaatccttagcctttgatttcactaaggatcttctcttttgatttcacaag 37879213  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||    
T  37879214 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaattttccccaaaaggcaccaacctttttcacaagagc 37879306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 7482435 - 7482625
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaaga 102  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||    
T  7482435 gtgtttacaattgcttcccaactctagaatctaacccccaaaagagaaccaacccttagc-tttgatttcctaaggatcttctctttttgtttcacaaga 7482533  T
Q  103 ctcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||    
T  7482534 ctcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaacccttttcccaagagc 7482625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 37168262 - 37168070
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||| ||||||||||    
T  37168262 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaatcaacctttagcctttgatttcactaaggatcttctcttttagtttcacaag 37168163  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||    
T  37168162 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaacccttttcccaagagc 37168070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 42298178 - 42298370
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  42298178 gtgtttacaattgtttcacaactctagaatctaacccccaaaagagaaccaactcttagcctttgatttcacttaggatcttctcttttggtttcacaag 42298277  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||    
T  42298278 actcacccaagttgctcgcaaatgactctccactcatgtgtttcccaaccccatgaatcttctccaaaaggcaccaacccttttcacaagagc 42298370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 11348663 - 11348471
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  11348663 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaag 11348564  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||| ||||||  | ||||| |||||||    
T  11348563 actcacccaagttgctcacaaatgactctccactcatgtgttttccaaccccatgaatcttctccaaaaggcaccagaccttttcccaagagc 11348471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 37033276 - 37033468
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||    
T  37033276 gtgtttacaattgtttcccaactctagaatctaaccccaaaaagagaaccaacccatagcctttgatttcactaaggatcttctcttttggtttcacaag 37033375  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||| ||||| |||||||    
T  37033376 actcacccaagttgctcacaaatgactctccactcatgtgtttcccaacctcatgaatcttcctcaaaaggcaccaacccttttcccaagagc 37033468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 195
Target Start/End: Original strand, 13547292 - 13547485
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||    
T  13547292 gtgtttacaattgtttcccaaatctagaatctaacccccaaaagagaaccaacccttagcctttgatttcactaagtatcttctcttttggtttcacaag 13547391  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagct 195  Q
    | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| ||||| ||| ||||||||||||||    
T  13547392 attcacccaagttgctcacaaaagactctccactcatgtgttttccaaccccatgaattttcctcaaaaggcaccgacccttttcacaagagct 13547485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 195
Target Start/End: Original strand, 13549203 - 13549396
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||    
T  13549203 gtgtttacaattgtttcccaaatctagaatctaacccccaaaagagaaccaacccttagcctttgatttcactaagtatcttctcttttggtttcacaag 13549302  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagct 195  Q
    | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| ||||| ||| ||||||||||||||    
T  13549303 attcacccaagttgctcacaaaagactctccactcatgtgttttccaaccccatgaattttcctcaaaaggcaccgacccttttcacaagagct 13549396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 193576 - 193385
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  193576 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaag 193477  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| ||||||||| ||| | |||||||    
T  193476 actcatccaagttgctcacaaaagactcttcacacatgtgtttcccaaccccatgaatctt-cccaaaaggcaccaaccttttccccaagagc 193385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 3 - 193
Target Start/End: Complemental strand, 29136212 - 29136022
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  29136212 gtgtttacaattgtttcacaactctagaatctaacccccaaaagagaactaacccttagcctttgatttcactaaggatcttctcttttggtttcacaag 29136113  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagag 193  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||||| ||||||    
T  29136112 actcacccaagttgctcacaaaaaactctccactcatgt-ttttccaaccccatgaatcttccccaaaaggcaccaacccttttcccaagag 29136022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 194
Target Start/End: Complemental strand, 47115135 - 47114945
Alignment:
Q  4 tgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcct-aaggatcttctcttttggtttcacaaga 102  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||    
T  47115135 tgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaacccttagcctttgatttcattaaggatcttctcttttggtttcacaaga 47115036  T
Q  103 ctcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | ||||||| | ||| |||||||    
T  47115035 ctcacccaagttgctcacaaaagactctccattcatgtgtttcccaaccccatgaatctt-cccaaaaggtaccaaccctgttcccaagagc 47114945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 19754459 - 19754264
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcc----taaggatcttctcttttggtttcac 98  Q
    |||||||| | ||||||||||| ||||||||||||||||||||||||||||||  ||| |||||||||||     ||||||| |||||||||||||||||    
T  19754459 gtgtttacgaatgtttcccaactctagaatctaacccccaaaagagaaccaaccattatcctttgatttcacttataaggattttctcttttggtttcac 19754360  T
Q  99 aagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  19754359 aagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaacccttttcacaagagc 19754264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 34602557 - 34602735
Alignment:
Q  17 ttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgc 116  Q
    |||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34602557 ttcccaactctagaatctaacctccaaaagagaaccaacccttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgc 34602656  T
Q  117 tcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagct 195  Q
    |||||||||||| | ||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||  ||||||||    
T  34602657 tcacaaaagacttttcactcatgtgttttccaaccccatgaatcttccccaaaaggcaccaacccttttaccaagagct 34602735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 31925910 - 31926099
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||| || |||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  31925910 gtgtttacaactgcttcc-aactctagaatctaacccccaaaagagaaccaaccattagcctttgatttcactaaggatcttctcttttggtttcacaag 31926008  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaaga 192  Q
     |||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||| ||||||||| |||||||||||    
T  31926009 tctcacccaagttgctcacaaaagattctccactcacgtgtttcccaaacccatgaatcttccccaaaaggcaccaacccttttcacaaga 31926099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 28242353 - 28242162
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||| ||||| ||||||||||||||| |||||||||||||| | |||||||||||||| |||||||| ||||||||||||||||||||    
T  28242353 gtgtttacaattgttttccaactctagaatctaacccctaaaagagaaccaacccatagcctttgatttcactaaggatattctcttttggtttcacaag 28242254  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||| ||||||| ||||||||| ||||| |||||||    
T  28242253 actcacccaagttgctcacaaatgactctccactcatgtgtttcccaaccttatgaatctt-cccaaaaggcaccaacccttttcccaagagc 28242162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 19752650 - 19752459
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||| ||| ||||||||| |||||||||||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||    
T  19752650 gtgtttacgattatttcccaactctagaatctaacccccaaaagagaaccaatcattagcctttgatttcactaaggatcttctcttttggtttcacaag 19752551  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||| | ||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||| ||||||||| |||||| ||||||    
T  19752550 actcatctaagttgctcacaaaatactctccactcatgtgtttcccaactcaatgaatcttccccaaaaggcaccaacc-ttttcataagagc 19752459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 6 - 177
Target Start/End: Original strand, 47255546 - 47255716
Alignment:
Q  6 tttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaagact 104  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  47255546 tttacaattatttcccaactctagaatctaacccccaaaagagaaccaacccttagtctttgatttcactaaggatcttctcttttggtttcacaagact 47255645  T
Q  105 cacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcacca 177  Q
    || | |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||    
T  47255646 ca-ctaagttgctcacaaaagactctccaatcatgtgtttcccaa-cccatgaatcttccccaaaaggcacca 47255716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 41135773 - 41135607
Alignment:
Q  14 tgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagt 113  Q
    |||||| |||| |||||||||||||||||||||||||||||  |||||||||| |||||| || |||||||||||||||||||  |||||||||||||||    
T  41135773 tgtttctcaactctagaatctaacccccaaaagagaaccaatccttagcctttaatttccaaatgatcttctcttttggtttcctaagactcacccaagt 41135674  T
Q  114 tgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaatgcaccaacc 180  Q
    | ||||| |||||||||||  | ||||||||||||||||||||||||| |||| |||| |||||||||    
T  41135673 ttctcac-aaagactctcctttgatgtgtttcccaaccccatgaatctctccctaaaaggcaccaacc 41135607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 22079278 - 22079140
Alignment:
Q  10 caattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcaccc 109  Q
    |||||||||| |||| |||||||||||||||||||||||||| | | |||||||||||||||| |||| ||||| | |||||||||  |||||||||||     
T  22079278 caattgtttctcaactctagaatctaacccccaaaagagaacaatc-cttagcctttgatttcataagcatcttatattttggtttgccaagactcacct 22079180  T
Q  110 aagttgctcacaaaagactctccactcatgtgtttcccaac 150  Q
    ||||||||||| |||||||||||  | ||||||||||||||    
T  22079179 aagttgctcac-aaagactctcccttgatgtgtttcccaac 22079140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 6808412 - 6808253
Alignment:
Q  1 aagtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaa 100  Q
    |||||||| | | |||||| |||| ||||||||||||| | ||| ||||||||||  |  | |||||||| | ||| ||||||||||||||||||  ||     
T  6808412 aagtgtttcccaatgtttctcaactctagaatctaacctcgaaa-gagaaccaaccttccgtctttgattacataatgatcttctcttttggttttccat 6808314  T
Q  101 gactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct 161  Q
     |||||||| ||||||||||||| |||||| || |||||||||| ||||||||||||||||    
T  6808313 tactcaccctagttgctcacaaatgactcttcattcatgtgttttccaaccccatgaatct 6808253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 38 - 180
Target Start/End: Original strand, 12318720 - 12318862
Alignment:
Q  38 ccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactca 137  Q
    |||| ||||||||||||| ||||||||||||||||| || ||| |||| ||||||| || |||||||||||||||||||||| |||| |||||||  | |    
T  12318720 cccccaaagagaaccaacccttagcctttgatttccaaaagattttctattttggtctcccaagactcacccaagttgctcataaaa-actctcctttga 12318818  T
Q  138 tgtgtttcccaaccccatgaa-tcttccccaaaatgcaccaacc 180  Q
    |||||||| ||| || ||||| |  ||||||||| |||||||||    
T  12318819 tgtgtttctcaatcctatgaacttctccccaaaaggcaccaacc 12318862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 25652050 - 25651931
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaaccccc-aaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||| |  |  ||||||||||||| |||||   |||||||| |||||||||||| |||||| |||| ||||    
T  25652050 gtgtttacaattgtttcccaactctagaatctaccttcataaaagagaaccaattcttaatatttgattttctaaggatcttcacttttgctttcccaag 25651951  T
Q  102 actcacccaagttgctcaca 121  Q
    | ||||||||||||||||||    
T  25651950 attcacccaagttgctcaca 25651931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 16216709 - 16216881
Alignment:
Q  11 aattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcaccca 110  Q
    ||||||||| |||| ||||||||||||||   |||   ||||||||| ||||||||||||||||||||||||||||||||   ||  ||| | |||| ||    
T  16216709 aattgtttctcaactctagaatctaaccct--aaactaaaccaactcgtagcctttgatttcctaaggatcttctcttttaagttttcaaaattcactca 16216806  T
Q  111 agttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaatgcaccaaccattttc 186  Q
    |||||||||| || |||||||| ||||||||||| |||| | ||||||| | |  |||||||||||||||| |||||    
T  16216807 agttgctcac-aatgactctcctctcatgtgtttgccaa-cacatgaatttctatccaaaatgcaccaacccttttc 16216881  T

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Target: chr1; HSP #25
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 3331505 - 3331369
Alignment:
Q  14 tgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagt 113  Q
    ||||||||||| |||||||| |||||| |||||| ||| ||| |||||||||||||||||||||||||| ||||||||||  |  |||| ||||| ||||    
T  3331505 tgtttcccaactctagaatccaacccc-aaaaga-aacaaacccttagcctttgatttcctaaggatctcctcttttggtaccctaagattcacctaagt 3331408  T
Q  114 tgctcacaaaagact--ctccactcatgtgtttcccaac 150  Q
    ||||| ||| |  ||  |||| |||||||||||||||||    
T  3331407 tgctcgcaagactctacctcctctcatgtgtttcccaac 3331369  T

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Target: chr1; HSP #26
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 9109660 - 9109773
Alignment:
Q  58 ttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatga 157  Q
    |||| |||||||| ||| | |||||||| ||||| |||| ||||||||| |||| |||||||||||||||||||   | |||||| |||||||| |||||    
T  9109660 ttagtctttgattacctcatgatcttctattttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatga 9109759  T
Q  158 atct-tccccaaaa 170  Q
    |||| |||||||||    
T  9109760 atctctccccaaaa 9109773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 185
Target Start/End: Original strand, 4535717 - 4535861
Alignment:
Q  49 aaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaa-------gttgctcacaaaagactctccactcatgtg 141  Q
    |||||||  ||||||||||||||||||||||||||| ||||| ||||  |||   ||||||||       |||||||||||| |||| ||||||||||||    
T  4535717 aaccaacctttagcctttgatttcctaaggatcttcacttttagtttaccaaatttcacccaagtgccaagttgctcacaaacgactatccactcatgtg 4535816  T
Q  142 tttcccaaccccatgaatct-tccccaaaatgcaccaaccatttt 185  Q
    |||  ||||||||||||||| | |||||||  |||||||| ||||    
T  4535817 tttttcaaccccatgaatctattcccaaaagacaccaaccctttt 4535861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 6068512 - 6068471
Alignment:
Q  48 gaaccaactcttagcctttgatttcctaaggatcttctcttt 89  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6068512 gaaccaactcttagcctttgatttcctaaggatcttctcttt 6068471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 27558454 - 27558543
Alignment:
Q  39 cccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactc 129  Q
    |||||||| |||| |||||||| |||||||||| ||||||||||| |||||| || |  ||||| ||||||| |||||||| |||| ||||    
T  27558454 cccaaaag-gaactaactcttaacctttgattttctaaggatcttatcttttagtgttccaagattcacccaggttgctcataaaatactc 27558543  T

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Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 10157555 - 10157501
Alignment:
Q  27 tagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatct 82  Q
    ||||||||||||||| |||  |||||||| ||||| ||||||||||||||||||||    
T  10157555 tagaatctaaccccctaaat-gaaccaacccttagtctttgatttcctaaggatct 10157501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 33775866 - 33775757
Alignment:
Q  11 aattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcaccca 110  Q
    |||||||||||||  ||||||||||| || |||||| |||| ||||||||| ||||||||| ||||  ||||  |||||| || || ||||| || | ||    
T  33775866 aattgtttcccaattctagaatctaa-cctcaaaag-gaacaaactcttagtctttgattttctaa-aatctcatcttttagtctctcaagattcgctca 33775770  T
Q  111 agttgctcacaaa 123  Q
    |||||||||||||    
T  33775769 agttgctcacaaa 33775757  T

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Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 48599537 - 48599729
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  48599537 gtgtttacaattgtttcccaactctagaatataacccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaag 48599636  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  48599637 actcacccaagttgctcacaaaagactctctactcatgttttttccaaccccatgaatcttccccaaaaggcaccaacccttttcacaagagc 48599729  T

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Target: chr7; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 2361175 - 2361366
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| ||||||||||||| | |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||    
T  2361175 gtgtttacaattgtttcccaactctagaatctaacctc-aaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcataag 2361273  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||    
T  2361274 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcatccccaaaaggcaccaacccttttcacaagagc 2361366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 3 - 186
Target Start/End: Complemental strand, 2390247 - 2390063
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  2390247 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaag 2390148  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttc 186  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||  |||||||| |||||    
T  2390147 actcacccaagttgctcacaaaagactatccactcatgtgttttccaaccccatgaatcttccccaaaagccaccaacccttttc 2390063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 6431936 - 6431744
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||    
T  6431936 gtgtttacaattgtttcccaactctagaatctaaccctcaaaagagaaccaacccttagcatttgatttcactaaggatcttctcttttggtttcacaag 6431837  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| ||| | |||||||    
T  6431836 actcacccaagttgctcacaaaagactctacactcatgtgttttccaaccccatgaatcttccccaaaaggcaccaaccctttccccaagagc 6431744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 34310919 - 34311111
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  34310919 gtgtttacaattatttcccaactctagaatctaacccccaaaagagaaccaacctttagcctttgatttcactaaggatcttctcttttggtttcacaag 34311018  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||| ||||| |||||||    
T  34311019 actcacccaagttgctcacaaaagactctccactcatgtgttttccatccccatgaaccttccccaaaaggcaccaacccttttcccaagagc 34311111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 4512593 - 4512771
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  4512593 gtgtttacaattgtttcccaactctagaatataacccccaaaagagaactaacccttagcctttgatttcactaaggatcttctcttttggtttcacaag 4512692  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaacc 180  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  4512693 actcacccaagttgctcacaaatgactctccactcatgtgtttccaaaccccatgaatcttccccaaaaggcaccaacc 4512771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 29608701 - 29608514
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||||||    
T  29608701 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaacccttagcctttgatttcactaagaatcttctattttggtttcacaag 29608602  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||| ||||||||| |||||||||||||    
T  29608601 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaat-----ccaaaaggcaccaacccttttcacaagagc 29608514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 3258959 - 3258769
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaaga 102  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||  |||||||||||||||||||||||||||||||||||||||    
T  3258959 gtgtttacaattgtttcccaactctagaatctaacccccaaatgagaaccaacccttagg-tttgatttcctaaggatcttctcttttggtttcacaaga 3258861  T
Q  103 ctcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||| |||||||    
T  3258860 ctcacccaagttgctaataaaagactctccactcatatgtttcccatccccatgaatcttccccaaaaggcaccaacccttttcccaagagc 3258769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 4508909 - 4509087
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| ||||||||||||||  |||||||||||||  |||||||||||||||| ||||||||||| |||||||||||||||||    
T  4508909 gtgtttacaattgtttcccaactctagaatctaacccataaaagagaaccaatccttagcctttgatttcactaaggatcttatcttttggtttcacaag 4509008  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaacc 180  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4509009 actcaccaaagttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaacc 4509087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 4510751 - 4510929
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| ||||||||||||||  |||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||    
T  4510751 gtgtttacaattgtttcccaactctagaatctaacccataaaagagaaccaatcgttagcctttgatttcactaaggatcttctcttttggtttcacaag 4510850  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaacc 180  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4510851 actcaccaaagttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaacc 4510929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 8359520 - 8359699
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaa-cccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaa 100  Q
    |||||||||||||||| ||||| | ||||||||| ||||||||| | |||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  8359520 gtgtttacaattgttttccaactcaagaatctaaacccccaaaaaataaccaactcttagcctttgatttcactaaggattttctcttttggtttcacaa 8359619  T
Q  101 gactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaacc 180  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8359620 gactcatccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaacc 8359699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 6360115 - 6360307
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||    
T  6360115 gtgtttaaaattgtttcccaactctagaatctaacccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttgatttcacaag 6360214  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||||||||||| ||||||||||||||||||||  |||| ||||||||||||  ||||| ||||||  | ||||| |||||||    
T  6360215 actcacccaagttgctcacaaatgactctccactcatgtgtttttcaactccatgaatcttcttcaaaaggcaccattccttttctcaagagc 6360307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 3 - 179
Target Start/End: Complemental strand, 22269937 - 22269761
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    ||||||| |||||||||| ||| |||||||||||||||||||||||||||||| | |||||| ||||||| ||||||||||||| |||||||||||||||    
T  22269937 gtgtttagaattgtttcc-aactctagaatctaacccccaaaagagaaccaacccatagcctatgatttcactaaggatcttctattttggtttcacaag 22269839  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaac 179  Q
    ||||||||||||| ||| ||| ||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||    
T  22269838 actcacccaagtttctctcaatagactctccactcatgtgtttcccctccccatgaatcttccccaaaaggcaccaac 22269761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 3 - 179
Target Start/End: Original strand, 22328601 - 22328779
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccc-caaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaag 101  Q
    ||||||||||||||||||||||  ||| |||||||||| ||||||||||||||| |||||| ||||||| | ||||||| ||||||||| ||||| ||||    
T  22328601 gtgtttacaattgtttcccaactttaggatctaaccccccaaaagagaaccaacccttagcttttgattacataaggatattctcttttagtttcccaag 22328700  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaatgcaccaac 179  Q
    | |||||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||| ||||||||| ||||||||    
T  22328701 attcacccaagttgctcacaaatgactctctactcatgtttttcccaaccctatgaatctctccccaaaaggcaccaac 22328779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 1360364 - 1360479
Alignment:
Q  10 caattgtttcccaacactagaatctaacccc-caaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacc 108  Q
    |||||||||  |||| ||||||||||||||| ||||||||||||||  | || |||||||||||| ||  || ||||||||||||||  ||||||||||     
T  1360364 caattgtttttcaactctagaatctaaccccccaaaagagaaccaatccatatcctttgatttcccaaaaatattctcttttggttttccaagactcact 1360463  T
Q  109 caagttgctcacaaaa 124  Q
    |||||||||| |||||    
T  1360464 caagttgctcgcaaaa 1360479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 5116551 - 5116479
Alignment:
Q  51 ccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaa 123  Q
    |||||||||| ||||||||||||| ||||||||||||||||||| | ||||||||||| |||||  |||||||    
T  5116551 ccaactcttaacctttgatttcctgaggatcttctcttttggttacccaagactcacctaagtttatcacaaa 5116479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 43363667 - 43363766
Alignment:
Q  52 caactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaacc 151  Q
    |||| |||||| ||| ||||||||| |||||||||||||||| || ||||| |||||||| |||||||| || |||||||  |||||||||||| |||||    
T  43363667 caacccttagcatttaatttcctaaagatcttctcttttggtctctcaagattcacccaaattgctcac-aaggactctcatctcatgtgtttctcaacc 43363765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 150
Target Start/End: Original strand, 23794030 - 23794176
Alignment:
Q  3 gtgtttacaa-ttgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||| ||||||  |||| ||||||||||||| | ||| ||  ||||||  |||||||||||||| |||||||||| |||||||||| ||  | |    
T  23794030 gtgtttacaaattgtttttcaactctagaatctaaccacaaaatga--accaaccattagcctttgattttctaaggatctcctcttttggtctcttacg 23794127  T
Q  102 actcacccaagttgctcacaaaagactc-tccactcatgtgtttcccaac 150  Q
    | |||||||| |||||||| |||||||| ||| |||||||||||| ||||    
T  23794128 attcacccaaattgctcac-aaagactcatccgctcatgtgtttctcaac 23794176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 22552683 - 22552757
Alignment:
Q  49 aaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaa 123  Q
    ||||||| |||| |||||||||||||| | ||||||||||||||| || ||||| ||||||| || | |||||||    
T  22552683 aaccaacccttatcctttgatttcctatgaatcttctcttttggtctcccaagattcacccatgtagttcacaaa 22552757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 2579030 - 2579105
Alignment:
Q  4 tgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggat 80  Q
    ||||||||||||||||||||| ||||||| | | ||| |||||  | ||||| |||||||||| |||||||||||||    
T  2579030 tgtttacaattgtttcccaaccctagaat-ttatcccgaaaaggaacccaacccttagcctttaatttcctaaggat 2579105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 32358189 - 32358231
Alignment:
Q  152 ccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||| |||||||||| ||||||||| |||||||||||||    
T  32358189 ccatgaattttccccaaaaggcaccaacccttttcacaagagc 32358231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 37545121 - 37545199
Alignment:
Q  10 caattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttga-tttcctaaggatcttctcttt 89  Q
    ||||||||||| ||| ||  |||||||||   |||| |||||||||||||||||||||| |||  ||||||||||||||||    
T  37545121 caattgtttcctaactctgtaatctaacct--aaaaaagaaccaactcttagcctttgatttttgtaaggatcttctcttt 37545199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 5043592 - 5043401
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  5043592 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaactcttagcctttgattccactaaggatcttctcttttggtttcacaag 5043493  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||||    
T  5043492 actcacccaaattgctcacaaaagactctccactcatgtgtttcccaaccccatgaatctt-cccaaaaggcaccaacccttttcccaagagc 5043401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 17762956 - 17762760
Alignment:
Q  1 aagtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcaca 99  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||    
T  17762956 aagtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctctttttgtttcaca 17762857  T
Q  100 agactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct--tccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   |||||||| ||||||| | |||||||||||||    
T  17762856 agactcacccaagttgctcccaaaagactctccactcatgtgtttcccaaccccatgaatctaacccccaaaaggcaccaaaccttttcacaagagc 17762760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 603283 - 603475
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  603283 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaaccattagcctttgatttcactaaggatcttctcttttggtttcacaag 603382  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| | |||||||    
T  603383 actcacccaagttgctcacaaaggacactccactcatgtgtttcccaaccccatgaatcttctccaaaaggcaccaaccctttcctcaagagc 603475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 21593629 - 21593439
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaaga 102  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  21593629 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaacccttagc-tttgatttcctaaggatcttctcttttggtttcacaaga 21593531  T
Q  103 ctcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||| |||||| ||||||||| ||| | |||||||    
T  21593530 ctcacccaagttgctcaaaaatgactctccactcatgtgttttccaaccccatgaatcttctccaaaaggcaccaaccctttccccaagagc 21593439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 2973142 - 2973334
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  2973142 gtgtttacaattgtttcccaactctagaatctaatccctaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaag 2973241  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||| ||||||| |||||| || ||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||    
T  2973242 actcacccaagttgttcacaaatgactctgcattcatgtgtttcccaaccccatgaatcttcccaaaaaagcaccaacccttttcacaagagc 2973334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 3808912 - 3809103
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| |||||||| |||||||||||||| |||||    
T  3808912 gtgtttacaattgtttcccaactctagaatctaacccccaaaa-agaaccaacccttagcctttgatttcactaaggattttctcttttggttttacaag 3809010  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| |||||||||||||    
T  3809011 actcacccaagttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttctccaaaaggaaccaacccttttcacaagagc 3809103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 3 - 193
Target Start/End: Original strand, 26830327 - 26830518
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||    
T  26830327 gtgtttacaattgttttccaactctagaatctaacccccaaaagagaaccaacccttagcctttgatttcactaagaatcttctcttttggtttcacaag 26830426  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagag 193  Q
    |||| ||||||||||||||||| |||||| | ||||| |||||||||||||||||||||||| |||||| ||||||||| ||||| ||||||    
T  26830427 actcgcccaagttgctcacaaatgactctgcgctcatctgtttcccaaccccatgaatcttctccaaaaggcaccaacctttttcccaagag 26830518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 22425029 - 22425219
Alignment:
Q  1 aagtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaa 100  Q
    |||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||    
T  22425029 aagtgtttacaattgtttcccaactctataatctaacccc-aaaagagaaccaacccttagc-tttgatttcctaaggatattctcttttggtttcacaa 22425126  T
Q  101 gactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagag 193  Q
    |||| ||| |||||||||  ||| |||||| ||| |||||||||| |||||||||||||||||||||||||||||||||| || || ||||||    
T  22425127 gactaaccgaagttgctcttaaatgactcttcacccatgtgtttcacaaccccatgaatcttccccaaaatgcaccaacccttatcccaagag 22425219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 54 - 194
Target Start/End: Complemental strand, 17757998 - 17757855
Alignment:
Q  54 actcttagcctttgatttc-ctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccc 152  Q
    ||||||||||||||||||| || | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17757998 actcttagcctttgatttcactgatgatcttctctttttgtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccc 17757899  T
Q  153 catgaatct--tccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||   |||||||||||||||||| |||||||||||||    
T  17757898 catgaatctaacccccaaaatgcaccaacccttttcacaagagc 17757855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 5741001 - 5741120
Alignment:
Q  10 caattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcaccc 109  Q
    ||||||||| |||||  ||||||||||||||| |||   ||||||| ||||||||||||||| |||||||||||| ||||| ||||| ||||| ||||||    
T  5741001 caattgttttccaactttagaatctaaccccccaaaagtaaccaacccttagcctttgatttactaaggatcttcactttttgtttctcaagattcaccc 5741100  T
Q  110 aagttgctcacaaaagactc 129  Q
    || |||||||||||||||||    
T  5741101 aaattgctcacaaaagactc 5741120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 26800634 - 26800544
Alignment:
Q  103 ctcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||||| ||||| |||||||    
T  26800634 ctcacccaagttgctctcaatagactctccactcatgtgtttccc-atcccatgaatcttccccaaaaggcaccaacctttttcccaagagc 26800544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 25073525 - 25073457
Alignment:
Q  10 caattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaagg 78  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| |||||||||||    
T  25073525 caattgtttcccaactctagaatctaacccccaaaagagaatcaacccttagcctttaatttcctaagg 25073457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 11660571 - 11660452
Alignment:
Q  3 gtgtttacaa-ttgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||| |||||||| ||| ||||||||||||||| ||| ||  |||||| |||||||||||| |||||| || | | |||||||||| || ||||    
T  11660571 gtgtttacaaattgtttccgaactctagaatctaaccccaaaatga--accaacccttagcctttgaattcctatggttatcctcttttggtctcccaag 11660474  T
Q  102 actcacccaagttgctcacaaa 123  Q
    | ||| |||| |||||||||||    
T  11660473 attcatccaaattgctcacaaa 11660452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 25073076 - 25072991
Alignment:
Q  75 aaggatcttctcttttggtttcacaagactcacccaagttgctcaca-aaagactctccactcatgtgtttcccaaccccatgaatct 161  Q
    |||||||||||||||||||||| ||||||  | |||||||  ||||| |||||||||||  | |||||||||| ||||| ||||||||    
T  25073076 aaggatcttctcttttggtttcccaagacctatccaagtt--tcacataaagactctcctttgatgtgtttccaaaccctatgaatct 25072991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 6095802 - 6095994
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||| ||||||||| |||||||||||||||||||||||||||||    
T  6095802 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaacctttagcatttgatttcactaaggatcttctcttttggtttcacaag 6095901  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||    
T  6095902 actcacccaagttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaacccttttcaaaagagc 6095994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 49199671 - 49199862
Alignment:
Q  1 aagtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcaca 99  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||    
T  49199671 aagtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaaccattagcctttgatttcactaaggatcttctcttttggtttcaca 49199770  T
Q  100 agactca-cccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaa 190  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  49199771 agactcaacccaagttgctcacaaaagactctccactcatatgtttcccaaccccatgaatcttccccaaaaggcaccaacccttttcacaa 49199862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 34491178 - 34490986
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  34491178 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaag 34491079  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||||||||||| ||||||||||||||||||||  |||| |||||||||||| |||||| ||||||||| |||||||||||||    
T  34491078 actcacccaagttgctcacaaatgactctccactcatgtgtttttcaactccatgaatcttctccaaaaggcaccaacccttttcacaagagc 34490986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 46860437 - 46860244
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaac--tcttagcctttgatttcctaaggatcttctcttttggtttcacaa 100  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||    
T  46860437 gtgtttacaattgtttctcaactctagaatctaacccccaaaagagaaccaaccctcttagtctttgatttcctaaggatcttctcttttggtttcacaa 46860338  T
Q  101 gactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||| ||||| |||||||    
T  46860337 gactcacccaagttgctcacaaatgactctccactcatgtgtttcccatccctatgaatcttccccaaaaggcaccaacccttttcccaagagc 46860244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 30236090 - 30235898
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||   |||||||| |||||| |||||||||||||||||||||||||||||    
T  30236090 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaatcattagccttcgatttcactaaggatcttctcttttggtttcacaag 30235991  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||| ||||||||||| |||||||||||| ||||||| |||||||||||||| |||||||||| ||||||||| |||||||||||||    
T  30235990 actcacccaacttgctcacaaatgactctccactcttgtgttttccaaccccatgaatattccccaaaaggcaccaacccttttcacaagagc 30235898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 54593669 - 54593478
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| |||||||||||||||    
T  54593669 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaac-aacccttagcctttgatttcactaaggatcttctattttggtttcacaag 54593571  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | ||||||| ||||| |||||||    
T  54593570 actcactcaagttgctcacaaaagactctccactcatgtgttttccatccccatgaatcttccccaaaaggtaccaacccttttcccaagagc 54593478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 168
Target Start/End: Complemental strand, 4569916 - 4569750
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||||||||||||| |||| |||| |||||||||||||||||||    
T  4569916 gtgtttacaattgttttccaactctagaatctaaccaccaaaagagaaccaacccttagcctttgatttcactaaagatcatctcttttggtttcacaag 4569817  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaa 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4569816 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaa 4569750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 36018816 - 36018623
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||  | |||||||||||||| |||||||||||||||||||||||||||||    
T  36018816 gtgtttacaattgtttcccaactctagaatctaaaccccaaaagagaaccaatccatagcctttgatttcactaaggatcttctcttttggtttcacaag 36018717  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagct 195  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||| ||||| ||| ||||    
T  36018716 actcacccaagttgctcacaaatgactctccattcatgtgtttcccatccccatggatcttccccaaaaggcaccaacccttttcccaaaagct 36018623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 40913304 - 40913111
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| ||||| ||||||||||||||||||| |||||||||    
T  40913304 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaacccttaacctttaatttcactaaggatcttctcttttgctttcacaag 40913205  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttc-cccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| ||||| |||||||    
T  40913204 actcacccaatttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttctccaaaaaggcaccaacccttttcccaagagc 40913111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 47304216 - 47304025
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||||  ||||||||| |||||||| |||||||||||||| |||||    
T  47304216 gtgtttaaaattgttttccaactctagaatctaacccccaaaagagaaccaacccttagtttttgatttcactaaggatattctcttttggttttacaag 47304117  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||    
T  47304116 actcacctaagttgctcacaaaa-actctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaacccttttcccaagagc 47304025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 6 - 195
Target Start/End: Original strand, 55302171 - 55302361
Alignment:
Q  6 tttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaagact 104  Q
    ||||||||||||||||||| ||| |||||||||  ||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||    
T  55302171 tttacaattgtttcccaactctataatctaacctacaaaagagaaccaacccctagcctttgatttcactaaggatcttctcttttggtttcacaagact 55302270  T
Q  105 cacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagct 195  Q
    ||| |||||||||||||||||| ||||||||||||||||| |||||| ||||||| || ||||||| ||||||||| ||||| ||||||||    
T  55302271 cactcaagttgctcacaaaagaatctccactcatgtgttttccaacctcatgaatttttcccaaaaggcaccaacccttttcccaagagct 55302361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 41819727 - 41819916
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaaga 102  Q
    |||||||||||| ||||||||| ||||||||||||| | |||||||||||||| |||||| ||||||||| ||| |||||||||||||||||||| ||||    
T  41819727 gtgtttacaattatttcccaactctagaatctaaccgctaaaagagaaccaacccttagc-tttgatttcataaagatcttctcttttggtttcataaga 41819825  T
Q  103 ctcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||||    
T  41819826 ctcactcaagttgctcacaaatgagtctccactcatgtgtttcccaaccccatgaatctt-cccaaaaggcaccaacccttttcccaagagc 41819916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 5434081 - 5434273
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaaga 102  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||| |||   |||| |||||||| | ||||||||||||||||||||||| |||||    
T  5434081 gtgtttacaattgtttcccaactctataatctaacccccaaaagagaatcaatctttagtctttgattacataaggatcttctcttttggtttcccaaga 5434180  T
Q  103 ctcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||  ||| |||| ||||| |||||||    
T  5434181 ctcacccaacttgctcacaaaagactctccactcatgtgtttcctaaccccatgaatctctccctaaaaaacactaacccttttcccaagagc 5434273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 43402032 - 43402185
Alignment:
Q  42 aaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgt 140  Q
    |||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| || |||||||||||||    
T  43402032 aaaagagaaccaacccatagcctttgatttcactaaggatcttctcttttggtttcacaagacttacccaagttgttcacaaatgattctccactcatgt 43402131  T
Q  141 gtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||| |||||||    
T  43402132 gtttcccaaccccatgaatcttccccaaaaggcaccaacccttttctcaagagc 43402185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 43403975 - 43404128
Alignment:
Q  42 aaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgt 140  Q
    |||||||||||||| | |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  43403975 aaaagagaaccaacccatagcctttgatttcactaaggatcttctcttttagtttcacaagactcacccaagttgctcccaaatgactctccactcatgt 43404074  T
Q  141 gtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||| ||||||||||||||||||||||||| ||||||||| ||||| |||||||    
T  43404075 gttttccaaccccatgaatcttccccaaaaggcaccaacccttttcccaagagc 43404128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 1683440 - 1683274
Alignment:
Q  14 tgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagt 113  Q
    ||||||||||| ||||| ||||||||| |||||| ||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  1683440 tgtttcccaactctagattctaacccc-aaaagataaccaacccttagcctttgattttctaaggatcttctcttttggtctcacaagactcaccaaagt 1683342  T
Q  114 tgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaatgcaccaacc 180  Q
    |||||| ||| || | ||||||||||||||| |||||||||||||||| | |||||||||||||||||    
T  1683341 tgctcataaatgattatccactcatgtgttttccaaccccatgaatctcttcccaaaatgcaccaacc 1683274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 34795819 - 34795676
Alignment:
Q  16 tttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttg 115  Q
    |||||||||  |||||| ||||| | |||||||||||| | ||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||     
T  34795819 tttcccaactttagaatttaaccac-aaaagagaaccatcccttagcctttgattttctaaggatcttctcttttggtctcccaagactcacccaagttt 34795721  T
Q  116 ctcacaaaagactctccactcatgtgtttcccaaccccatgaatct 161  Q
    || |||||| |||||||  | |||||| ||||||||||||||||||    
T  34795720 cttacaaaa-actctcctttgatgtgtatcccaaccccatgaatct 34795676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 26323286 - 26323385
Alignment:
Q  10 caattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcaccc 109  Q
    ||||||||||||||| ||| |||||||||| ||||||||||||||| |||||| ||||||||||||||||| |||| ||||||| || ||||||||||||    
T  26323286 caattgtttcccaactctaaaatctaaccctcaaaagagaaccaacccttagcttttgatttcctaaggatattcttttttggtctcccaagactcaccc 26323385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 95 - 184
Target Start/End: Complemental strand, 28074488 - 28074399
Alignment:
Q  95 tcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattt 184  Q
    |||||||||||||| ||||| ||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||    
T  28074488 tcacaagactcacctaagtttctctcaatagactctccactcatgtgtttcccatccccatgaatcttccccaaaacgcaccaactattt 28074399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 20937613 - 20937444
Alignment:
Q  10 caattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcaccc 109  Q
    ||||| |||| |||| |||||||||| | |||||||||||||||||  ||| |||||||||||||||| ||||||||||||||| || ||||| ||||||    
T  20937613 caattatttctcaactctagaatcta-ctcccaaaagagaaccaacctttatcctttgatttcctaagaatcttctcttttggtctcccaagaatcaccc 20937515  T
Q  110 aagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaatgcaccaacc 180  Q
    |||||  |||| |||||||| |   | ||||||||  ||||| ||||||||| ||| ||||| |||||||||    
T  20937514 aagtttgtcac-aaagactcccttttgatgtgtttttcaaccacatgaatctctcctcaaaaggcaccaacc 20937444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 39127503 - 39127421
Alignment:
Q  10 caattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggt 93  Q
    ||||||||||| ||| ||||||| ||||| | |||||||||| ||| |||||||||||||||||||||| | ||||||||||||    
T  39127503 caattgtttccaaactctagaatttaaccac-aaaagagaactaacccttagcctttgatttcctaagggtattctcttttggt 39127421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 171
Target Start/End: Complemental strand, 36796307 - 36796206
Alignment:
Q  72 cctaaggatcttctcttttggtttcac-aagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaa 169  Q
    ||||||||||| | |||||||||||   |||| |||||||||||||| || || |||||||||||| ||||| |||| ||||| ||||||| ||||||||    
T  36796307 cctaaggatctacacttttggtttccttaagattcacccaagttgctaaccaatgactctccactcttgtgtctcccgaccccgtgaatctctccccaaa 36796208  T
Q  170 at 171  Q
    ||    
T  36796207 at 36796206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 31340404 - 31340456
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaac 55  Q
    |||||||||||||||||||||| ||||||||||||||| ||||| | ||||||    
T  31340404 gtgtttacaattgtttcccaactctagaatctaacccctaaaagggcaccaac 31340456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 161
Target Start/End: Original strand, 35138944 - 35139067
Alignment:
Q  38 ccccaaaagagaaccaactcttagcctttg-atttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactc 136  Q
    |||||||||||||  ||| |||||| |||  |||||||||||||||||| ||||||| || |||||||||  |||||||||||  ||||||||||   |     
T  35138944 ccccaaaagagaattaacccttagcttttttatttcctaaggatcttctattttggtctcccaagactcattcaagttgctca-taaagactctcatttg 35139042  T
Q  137 atgtgtttcccaaccccatgaatct 161  Q
    || ||||| |||||| |||||||||    
T  35139043 atttgttttccaacctcatgaatct 35139067  T

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Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 36796749 - 36796686
Alignment:
Q  14 tgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaagg 78  Q
    ||||||||||| || ||||||||||| ||||||  || |||| ||||||||||||||||||||||    
T  36796749 tgtttcccaactcttgaatctaaccctcaaaagt-aatcaacccttagcctttgatttcctaagg 36796686  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 26323821 - 26323874
Alignment:
Q  107 cccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct 161  Q
    ||||||||||||||||| ||||||||  | ||||||||| |||||||||||||||    
T  26323821 cccaagttgctcacaaa-gactctcctttgatgtgtttctcaaccccatgaatct 26323874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 3 - 187
Target Start/End: Original strand, 50674049 - 50674234
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  50674049 gtgtttacaattgttttccaactctagaatctaacccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaag 50674148  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttca 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||| ||||||    
T  50674149 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatctttcccataaggcaccaacccttttca 50674234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 54882985 - 54882793
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||    
T  54882985 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacgag 54882886  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||| |||||| ||||||    
T  54882885 actcacccaagtttctcacaaaagactctacactcatgtgtttcccaaccccatgaatcttctccaaaaggcaccaacccttttcataagagc 54882793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 379343 - 379152
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaaga 102  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  379343 gtgtttacaattgtttcccaactctagaatctaacccacaaaagagaaccaacccttagcctttgatttcctaaggatcttctcttttgatttcacaaga 379244  T
Q  103 ctcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||  | |||||||||||||||||| ||||| ||| |||||||||||||    
T  379243 ctcacccaagttgctcacaaatgactctccactcatgtgtttcccattctcatgaatcttccccaaaaggcaccgacccttttcacaagagc 379152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 46703464 - 46703274
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaaga 102  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  46703464 gtgtttacaattgtttcccaacactataatctaacccccaaaagagaaccaacttttagcctttgatttcctaaggattttctcttttggtttcacaaga 46703365  T
Q  103 ctcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||||||| ||||||||| ||||| |||||||    
T  46703364 ctcacccaagttgctgacaaaagactctccattcatgt-tttcccatccccatgaatcttccccaaaaggcaccaacccttttcccaagagc 46703274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 8665372 - 8665180
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| | |||||||||||||||||||| ||||||| | || ||||||||||| |||||||||||||||||||||||||||||    
T  8665372 gtgtttacaattgtttcccaactccagaatctaacccccaaaagaaaaccaacacataacctttgatttcactaaggatcttctcttttggtttcacaag 8665273  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||    
T  8665272 actcacccaagttgctcacaaaagactctccactcctgtgtttcccaaccccatgaatcttccccaaaaggcaccaacccttttcccaagagc 8665180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 55085568 - 55085760
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||| ||| ||||||||||||||||||| ||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  55085568 gtgtttacaattgtttccgaactctagaatctaacccccaaaggagaatcaacccttagcctttgatttcactaaggatcttctcttttggtttcacaag 55085667  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| | |||||||    
T  55085668 actcacacaagttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaaccctttccccaagagc 55085760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 3 - 186
Target Start/End: Complemental strand, 35662405 - 35662223
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaaga 102  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  35662405 gtgtttacaattgtttcccaactctagaatctaacacccaaaagagaaccaacccttagc-tttgatttcctaaggatcttctcttttggtttcacaaga 35662307  T
Q  103 ctcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttc 186  Q
    |||||||||||||||||||||  |||||||| |||||||||| ||||||||||||||||||||||||| ||||||||| |||||    
T  35662306 ctcacccaagttgctcacaaagaactctccattcatgtgttttccaaccccatgaatcttccccaaaaggcaccaacccttttc 35662223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 50262904 - 50263093
Alignment:
Q  6 tttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaagact 104  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||| |||||| ||||||||||||||||||||||| |    
T  50262904 tttacaattgtttcccaactctagaatctaacccccaaaagagaaccaaccattagcctttgatttcactaagggtcttctcttttggtttcacaagagt 50263003  T
Q  105 cacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||  |||||||    
T  50263004 caccgaggttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaaccctttttccaagagc 50263093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 26364222 - 26364038
Alignment:
Q  11 aattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaagactcaccc 109  Q
    |||||||||||||| ||| ||||||||| |||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  26364222 aattgtttcccaactctaaaatctaaccaccaaaagagaaccaacccttagcatttgatttcactaaggatcttctcttttggtttcacaagactcaccc 26364123  T
Q  110 aagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || |||||| |||||||||||||    
T  26364122 aagttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttctccaaaaggccccaacccttttcacaagagc 26364038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 41964379 - 41964212
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  41964379 gtgtttacaattgtttcccaactctagaatctaacccc-aaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaag 41964281  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaa 170  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  41964280 actcacccaagttgctcacaaaagactctctactcatgtgtttcccaaccccatgaatctttcccaaaa 41964212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 3 - 185
Target Start/End: Complemental strand, 12073357 - 12073175
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| |||    
T  12073357 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaacccttagcatttgatttcactaaggatcttctcttttggtttcataag 12073258  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccatttt 185  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||    
T  12073257 actcacccaagttgctcacaaaagactcttcactcatgtgttttccaaccccatgaatctt-cccaaaaggcaccaaccctttt 12073175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 8648103 - 8647911
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    ||||||||| |||||||| ||| | |||||||||||||||||||||||||||| | || | ||||||||| ||||||||||||||||||| |||||||||    
T  8648103 gtgtttacagttgtttcctaactccagaatctaacccccaaaagagaaccaacacataacatttgatttcactaaggatcttctcttttgatttcacaag 8648004  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||    
T  8648003 actcacccaagttgctcacaaaagactctccactcctgtgtttcccaaccccatgaatcttccccaaaaggcaccaacccttttcccaagagc 8647911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 6655921 - 6655729
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||| ||||  ||||||||||||||  |||| ||||||||||||||||||||||||    
T  6655921 gtgtttacaattgtttcccaactctagaatctaaccccaaaaagagaaacaacctttagcctttgattttactaatgatcttctcttttggtttcacaag 6655822  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| | |||||||    
T  6655821 actcacccaagttgctcagaaatgactctccactcatgtgtttcccaaccccatgaatcttctccaaaaggcaccaaccctttccccaagagc 6655729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 180
Target Start/End: Complemental strand, 33989826 - 33989649
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaaga 102  Q
    ||||||||| |||||||||||| ||||||||||||| |||||||||||| ||  |||||||||||||| |||||||||||||||||||||||||| ||||    
T  33989826 gtgtttacagttgtttcccaactctagaatctaacctccaaaagagaacaaatccttagcctttgattacctaaggatcttctcttttggtttcaaaaga 33989727  T
Q  103 ctcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaacc 180  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||  ||||||| |||||||||    
T  33989726 ctcacccaagttgctcacaaatgactctccactcatgtgtttcccaatcccatgaatctctcccaaaaggcaccaacc 33989649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 40630879 - 40630756
Alignment:
Q  72 cctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaat 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40630879 cctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaag 40630780  T
Q  172 gcaccaaccattttcacaagagct 195  Q
    ||||||||| ||||||||| ||||    
T  40630779 gcaccaacccttttcacaaaagct 40630756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 6 - 165
Target Start/End: Complemental strand, 12119499 - 12119341
Alignment:
Q  6 tttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactc 105  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||| |||| | || |||||| |||||||||||||||||||||||||||||| |    
T  12119499 tttacaattgtttcccaactctataatctaacccccaaaagagaaccaacccttaac-ttcgatttcttaaggatcttctcttttggtttcacaagacac 12119401  T
Q  106 acccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccc 165  Q
    |||||| ||||||||||| || || ||||| ||||||||| |||||||||||||||||||    
T  12119400 acccaaattgctcacaaatgattcaccactaatgtgtttcgcaaccccatgaatcttccc 12119341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 4 - 194
Target Start/End: Original strand, 27417165 - 27417346
Alignment:
Q  4 tgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaaga 102  Q
    ||||||||||||||||  ||| | |||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| ||||||||| ||||||    
T  27417165 tgtttacaattgtttcaaaactcaagaatctaacccccaaaagagaaccaacccttagtctttgatttcactaaggatcttcttttttggttttacaaga 27417264  T
Q  103 ctcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||  |||| |||||||    
T  27417265 ctcaccca----------aaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaagacaccaacccctttcccaagagc 27417346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 3 - 193
Target Start/End: Complemental strand, 2209678 - 2209482
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||    
T  2209678 gtgtttacaattatttcccaactctagaatctaacccccaaaagagaaccaacccatagcctttgatttcactaaggatcttctcttttggtttcacaag 2209579  T
Q  102 actcacccaagttgctcacaaa-----agactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagag 193  Q
    |||| |  |       | || |      |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||    
T  2209578 actcgctgagaaccaacccatagcctttgactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaacccttttcccaagag 2209482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 41961368 - 41961198
Alignment:
Q  10 caattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcaccc 109  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||| |||||| ||||||||||||||||| |||| ||||||| || ||||||||||||    
T  41961368 caattgtttcccaactctagaatctaaccctcaaaagagaaccaacccttagcttttgatttcctaaggatattcttttttggtctcccaagactcaccc 41961269  T
Q  110 aagtt-----gctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaatgcacc 176  Q
    |||||     ||||||| | ||||||||  | ||||||||||||| ||||||||||| ||||||||| |||||    
T  41961268 aagttacgttgctcacata-gactctcctttaatgtgtttcccaa-cccatgaatctctccccaaaaagcacc 41961198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 74 - 194
Target Start/End: Original strand, 46569821 - 46569941
Alignment:
Q  74 taaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgc 173  Q
    |||||| ||||||||||||||||| |||| ||||| |||||| |||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| ||    
T  46569821 taaggaccttctcttttggtttcataagattcacctaagttgttcacaaaagactttccactcatttgtttcccaaccccatgaatctttcccaaaaggc 46569920  T
Q  174 accaaccattttcacaagagc 194  Q
    ||||| | |||||||||||||    
T  46569921 accaatccttttcacaagagc 46569941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 40 - 186
Target Start/End: Complemental strand, 34112539 - 34112392
Alignment:
Q  40 ccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatg 139  Q
    |||||||||||||||   |||||||||||||||||||||||||||  ||||| |||  ||||| ||| |||||||||||||| | |||||||||||||||    
T  34112539 ccaaaagagaaccaaactttagcctttgatttcctaaggatcttcagttttgtttttccaagattcatccaagttgctcacagatgactctccactcatg 34112440  T
Q  140 tgtttcccaaccccatgaatct-tccccaaaatgcaccaaccattttc 186  Q
    ||||| |||||||| |||| || ||||||||| ||||||||| |||||    
T  34112439 tgttttccaaccccgtgaacctctccccaaaaggcaccaacccttttc 34112392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 3786030 - 3785926
Alignment:
Q  26 ctagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaag 125  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||| | ||| |||||||| ||||    
T  3786030 ctagaatcta-cccccaaaagagaaccaactcttagcctttgatttcctaaggatattctcttttggtctcccaagactcgcacaatttgctcac-aaag 3785933  T
Q  126 actctcc 132  Q
    |||||||    
T  3785932 actctcc 3785926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 33089841 - 33089705
Alignment:
Q  14 tgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagt 113  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||  |||||||||||||| ||||||||||||||||||||           || |||||||    
T  33089841 tgtttcccaactctataatctaacctccaaaagagaaccaacctttagcctttgattttctaaggatcttctcttttgg-----------tctcccaagt 33089753  T
Q  114 tgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct 161  Q
    |||||||||| ||||||||||||||||||||  | |||||||||||||    
T  33089752 tgctcacaaatgactctccactcatgtgtttttcgaccccatgaatct 33089705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 26699647 - 26699807
Alignment:
Q  1 aagtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaa 100  Q
    ||||||||||||||||||||||||  || ||||||||||| ||||||||||||||  ||| ||||||||| | ||| |||| |||||||| ||||   ||    
T  26699647 aagtgtttacaattgtttcccaactttataatctaacccctaaaagagaaccaacctttaacctttgattacataaagatcatctcttttagttttctaa 26699746  T
Q  101 gactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct 161  Q
    |||||| |  ||||| |||| || || ||||||||||||| | |||| |||||||||||||    
T  26699747 gactcatctgagttgttcactaatgaatctccactcatgtatctcccgaccccatgaatct 26699807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 22882964 - 22883110
Alignment:
Q  11 aattgtttcccaacactagaatctaacccc-caaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcaccc 109  Q
    |||||||| ||||  ||||||||||||||| |||||||||||||||  ||| |||||||||| ||||||||||||||||||||| ||  ||||||| |||    
T  22882964 aattgttttccaattctagaatctaaccccccaaaagagaaccaaccattatcctttgattttctaaggatcttctcttttggtctcctaagactcgccc 22883063  T
Q  110 aagttgctcacaaaagactctccactcatgtgtttcccaaccccatga 157  Q
    || |||||||| ||||||||||   | |||||||||| ||||| ||||    
T  22883064 aaattgctcac-aaagactctcatttgatgtgtttcctaaccctatga 22883110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 22934628 - 22934774
Alignment:
Q  11 aattgtttcccaacactagaatctaacccc-caaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcaccc 109  Q
    |||||||| ||||  ||||||||||||||| |||||||||||||||  ||| |||||||||| ||||||||||||||||||||| ||  ||||||| |||    
T  22934628 aattgttttccaattctagaatctaaccccccaaaagagaaccaaccattatcctttgattttctaaggatcttctcttttggtctcctaagactcgccc 22934727  T
Q  110 aagttgctcacaaaagactctccactcatgtgtttcccaaccccatga 157  Q
    || |||||||| ||||||||||   | |||||||||| ||||| ||||    
T  22934728 aaattgctcac-aaagactctcatttgatgtgtttcctaaccctatga 22934774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 40632410 - 40632341
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc 72  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| | |||||||||    
T  40632410 gtgtttacaattgtttctcaactctagaatctaacccccaaaagagaaccaacccttaacatttgatttc 40632341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 32091435 - 32091324
Alignment:
Q  10 caattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcaccc 109  Q
    ||||||||||| |||  |||||||| ||||| |||| ||||||||| ||| |||||||||||||||||||||||||| | |||| || ||| ||| ||||    
T  32091435 caattgtttccaaactttagaatcttaccccaaaaa-agaaccaacactttgcctttgatttcctaaggatcttctcctctggtctcccaaaacttaccc 32091337  T
Q  110 aagttgctcacaa 122  Q
    |||||| ||||||    
T  32091336 aagttgttcacaa 32091324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 35370553 - 35370698
Alignment:
Q  14 tgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagt 113  Q
    ||||||||||  ||| |||||||| || ||||||||||||||  |||||||||||||||| || |||||||| ||||||| ||   ||||||||||||||    
T  35370553 tgtttcccaattctataatctaactcc-aaaagagaaccaaccattagcctttgatttcccaaagatcttctattttggtatccatagactcacccaagt 35370651  T
Q  114 tgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct 161  Q
    |||| || |||||||||||  | |||| |||  ||||| |||||||||    
T  35370652 tgcttac-aaagactctcctttgatgtttttatcaacctcatgaatct 35370698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 41639391 - 41639345
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagaga 49  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  41639391 gtgtttacaattgtttcccaactctagaatctaacccccaaaagaga 41639345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 35369652 - 35369763
Alignment:
Q  10 caattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcaccc 109  Q
    ||||||||||||||  ||| |||| |||||| |||||||||||||| |||||||||||| |||| || |||||||| ||||| | ||   ||||||||||    
T  35369652 caattgtttcccaattctataatccaacccc-aaaagagaaccaacccttagcctttga-ttcccaaagatcttctattttgctatccatagactcaccc 35369749  T
Q  110 aagttgctcacaaa 123  Q
    |||||||| |||||    
T  35369750 aagttgcttacaaa 35369763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 185
Target Start/End: Original strand, 22629147 - 22629275
Alignment:
Q  57 cttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatg 156  Q
    ||||||||||||||| ||||||||||| | | ||||| || ||||| |||| ||| |||||||  | | ||||||| |||||||||||| |||||||||     
T  22629147 cttagcctttgattttctaaggatcttttatgttggtctcccaagattcactcaaattgctca-gagatactctcctctcatgtgtttctcaaccccata 22629245  T
Q  157 aatct-tccccaaaatgcaccaaccatttt 185  Q
    ||| | | ||||||| |||| |||||||||    
T  22629246 aatatcttcccaaaaggcactaaccatttt 22629275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 25723433 - 25723571
Alignment:
Q  11 aattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcaccca 110  Q
    |||||||| ||| | |||||||||||| ||||||||||||||    || || |||||||| | ||||| |||||||||| ||| |  ||| ||||||  |    
T  25723433 aattgttttccatctctagaatctaacacccaaaagagaacc----ctcagtctttgattacttaagggtcttctctttcggtctaccaaaactcactta 25723528  T
Q  111 agttgctcacaaaagactctccactcatgtgtttcccaacccca 154  Q
    ||||| |||| ||||||||||   | ||||||||||||||||||    
T  25723529 agttgttcac-aaagactctcttttgatgtgtttcccaacccca 25723571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 6200139 - 6200218
Alignment:
Q  74 taaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaacccca 154  Q
    |||||||||||||||||||| || ||||| ||| |||| |||||||  || |||||||  |||||||||||| ||||||||    
T  6200139 taaggatcttctcttttggtatctcaagattcatccaaattgctca-taaggactctcatctcatgtgtttctcaacccca 6200218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 7292 - 7101
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||| | | |||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||    
T  7292 gtgtttacaattgtttcc-agctctagaatctaacccccaaaagagaaccaacccttagcctttgattttactaaggatcttctcttttggtttcacaag 7194  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  7193 actcacccaagttgctcacaaaagactctccactcatgtgttttccaaccccatgaatcttccccaaaaggcaccaacccttttcacaagagc 7101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 146; Significance: 4e-77; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 4 - 192
Target Start/End: Complemental strand, 40328743 - 40328554
Alignment:
Q  4 tgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaaga 102  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||    
T  40328743 tgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaactcatagcctttgatttcactaaagatcttctcttttggtttcacaaga 40328644  T
Q  103 ctcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaaga 192  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| ||||||||| ||||| |||||    
T  40328643 ctcacccaagttgctcacaaaagactctacactcatgtgtttcccatccccatgaatcttccctaaaaggcaccaacccttttcccaaga 40328554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 190
Target Start/End: Complemental strand, 11383951 - 11383763
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  11383951 gtgtttacaattatttcccaactctagaatctaacccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaag 11383852  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaa 190  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  11383851 actcacccaagttgctcacaaaagactttccacttatgtatttcccaaccccatgaatcttcctcaaaaggcaccaacccttttcacaa 11383763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 40221710 - 40221518
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||| |||||    
T  40221710 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaacctttagcctttgatttcactaaggatcttctcttttggttttacaag 40221611  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||  |||| |||||||    
T  40221610 actcacctaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcactaacccctttcccaagagc 40221518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 42435192 - 42435386
Alignment:
Q  1 aagtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcaca 99  Q
    |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  42435192 aagtgtttacaattgtttaccaactctagaatctaaccctcaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcaca 42435291  T
Q  100 agactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||  |||||||| ||||| |||||||    
T  42435292 agactcactcaagttgctcacaaaagactctccattcatatgtttcccaaccccatgaatcttccccaaaagtcaccaacctttttcccaagagc 42435386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 4283489 - 4283321
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  4283489 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaacccttagcctttgatttcactaaggatcttctcttttggtttcacaag 4283390  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaa 170  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  4283389 actcaaccaagtttctcacaaaagactttccactcatgtgtttcccaaccccatgaatctttcccaaaa 4283321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 44353757 - 44353565
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| |||||||||||||||||    
T  44353757 gtgtttacaattgtttcccaactctagaatctaacccccaaaagagaaccaacccttagcctttgatttcactaagaatcttttcttttggtttcacaag 44353658  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||||||||  | |||||||||||||||||||| |||||||||||||||||| |||||| ||||||||| | |||||||||||    
T  44353657 actcacccaagttgctcaccgatgactctccactcatgtgttttccaaccccatgaatcttctccaaaaggcaccaaccctcttcacaagagc 44353565  T

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Target: chr8; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 18655365 - 18655246
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||||||||||| ||  ||||||||||||||| ||||||| | |||| |||||||||||||||| ||||||||||||||||||| |||||||||    
T  18655365 gtgtttacaattgtttcctaagtctagaatctaacccc-aaaagagtatcaacccttagcctttgatttcactaaggatcttctcttttgatttcacaag 18655267  T
Q  102 actcacccaagttgctcacaa 122  Q
    ||||||| |||||||||||||    
T  18655266 actcaccgaagttgctcacaa 18655246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 40585664 - 40585532
Alignment:
Q  27 tagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaaga 126  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |  ||| |||||||||| |||||||| |||||    
T  40585664 tagaatcta-cccccaaaagagaaccaacccttagtctttgatttcctaaggatcttctcttttggtctaccaatactcacccaaattgctcac-aaaga 40585567  T
Q  127 ctctccactcatgtgtttcccaaccccatgaatct 161  Q
    ||||||  | |||||||| | ||||||||||||||    
T  40585566 ctctcctttgatgtgttttcaaaccccatgaatct 40585532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 78 - 187
Target Start/End: Original strand, 9633816 - 9633925
Alignment:
Q  78 gatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcacca 177  Q
    ||||||||| |||||||||  |||| |||||||||||||||||||| |||||||  || |||||||| |||||||||| |||||  ||||||| | ||||    
T  9633816 gatcttctcgtttggtttcctaagattcacccaagttgctcacaaatgactctcatcttatgtgtttaccaaccccattaatctctcccaaaaggtacca 9633915  T
Q  178 accattttca 187  Q
    ||| ||||||    
T  9633916 acctttttca 9633925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 22976389 - 22976307
Alignment:
Q  111 agttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||| ||||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||| ||||  |||||||    
T  22976389 agttgctcacaatagactcttcactcatgtgttttc-aaccccatgaatcttccccaaaaggcaccaaccctttttccaagagc 22976307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 62 - 179
Target Start/End: Original strand, 3846082 - 3846199
Alignment:
Q  62 cctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct 161  Q
    |||||||||||| || |||| ||||||||||| ||  |||| | |||||| ||||||||||| || ||| | ||||||||||||||||||||||||||||    
T  3846082 cctttgatttccaaaagatcgtctcttttggtatccaaagatttacccaatttgctcacaaa-gaatcttctctcatgtgtttcccaaccccatgaatct 3846180  T
Q  162 -tccccaaaatgcaccaac 179  Q
     |||||||||  |||||||    
T  3846181 ctccccaaaagacaccaac 3846199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 33655548 - 33655628
Alignment:
Q  43 aaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaa 123  Q
    ||||||||||||| |||| |||||||||| ||||||||||||||||||| | ||  |||| |||||||| |||||||||||    
T  33655548 aaagagaaccaacccttaacctttgattttctaaggatcttctcttttgttctcctaagattcacccaaattgctcacaaa 33655628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 10020398 - 10020272
Alignment:
Q  14 tgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagt 113  Q
    ||||||||||| |||||||| |||||  |||||| ||| ||| |||||||||||||||||||||||||| ||||||||||  |  |||| ||||| ||||    
T  10020398 tgtttcccaactctagaatccaaccca-aaaaga-aacaaacccttagcctttgatttcctaaggatctcctcttttggtaccctaagattcacctaagt 10020301  T
Q  114 tgctcacaaaagactctccactcatgtgttt 144  Q
    || ||||  |||||||| | |||||||||||    
T  10020300 tgttcac--aagactcttctctcatgtgttt 10020272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 2999823 - 2999904
Alignment:
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatc-ttccccaaaatgcaccaaccat 182  Q
    |||| ||||||||||||||||  ||||||| ||||||||||||| || ||||||||||| ||||||||||  ||||||||||    
T  2999823 actcgcccaagttgctcacaattgactctctactcatgtgtttctcatccccatgaatctttccccaaaagacaccaaccat 2999904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 10240113 - 10240004
Alignment:
Q  10 caattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcaccc 109  Q
    ||||||||||||||  |||||||||||||||  |||||||||||||||||||||  ||||||  |||||||||||| |||| ||    ||||| ||| ||    
T  10240113 caattgtttcccaaatctagaatctaacccc--aaagagaaccaactcttagcc--tgattttttaaggatcttcttttttagtagtccaagattcatcc 10240018  T
Q  110 aagttgctcacaaa 123  Q
    ||||| ||||||||    
T  10240017 aagttactcacaaa 10240004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 10101356 - 10101475
Alignment:
Q  3 gtgtttacaa-ttgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaag 101  Q
    |||||||||| || ||||| ||||||||||||||||||| ||| |   |||||| ||||| |||||||||  ||||||||| |||||||| | ||  |||    
T  10101356 gtgtttacaaattatttcctaacactagaatctaaccccaaaacgt--accaacccttagactttgatttaataaggatctcctcttttgatctcctaag 10101453  T
Q  102 actcacccaagttgctcacaaa 123  Q
    | ||| ||||||||||||||||    
T  10101454 attcatccaagttgctcacaaa 10101475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 186
Target Start/End: Original strand, 3817596 - 3817720
Alignment:
Q  62 cctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatc- 160  Q
    |||||||||||| || ||||||||| |||||| ||  || | |  ||||| |||||||| ||||| ||| | || |||| ||| |||||||||||||||     
T  3817596 cctttgatttccaaaagatcttctcgtttggtctccaaatatttgcccaatttgctcac-aaagaatcttctcttatgtattttccaaccccatgaatct 3817694  T
Q  161 ttccccaaaatgcaccaaccattttc 186  Q
    ||| |||||| ||||||||| |||||    
T  3817695 ttctccaaaaggcaccaacccttttc 3817720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 80486 - 80678
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    ||||| |||||||||||| ||| |||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||| ||||||| ||||| ||||    
T  80486 gtgttcacaattgtttcctaactctagaatctaacccccaaaatagaaccaacccttagcctttgatttcactaaggatctactcttttagtttcccaag 80585  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||    
T  80586 actcacccaagttgctcacaaaagactctccgctcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaacccttttcataagagc 80678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 11522 - 11331
Alignment:
Q  3 gtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcacaag 101  Q
    ||||||||||| |||||||||| ||||||||||||||| ||||||||| ||||  ||||||||||||||  |||| ||||||||||||||||||||||||    
T  11522 gtgtttacaat-gtttcccaactctagaatctaaccccaaaaagagaaacaacctttagcctttgattttactaatgatcttctcttttggtttcacaag 11424  T
Q  102 actcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| | |||||||    
T  11423 actcacccaagttgctcagaaatgactctccactcatgtgtttcccaaccccatgaatcttctccaaaaggcaccaaccctttccccaagagc 11331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 18204 - 18396
Alignment:
Q  1 aagtgtttacaattgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttc-ctaaggatcttctcttttggtttcaca 99  Q
    |||||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||    
T  18204 aagtgtttacaattgtttcc-aactctataatctaacccc-aaaagagaaccaactcttagtctttgatttcactaaggatcttctcttttggttttaca 18301  T
Q  100 agactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatctt-ccccaaaatgcaccaaccattttcacaagagc 194  Q
    |||||||| |||||||||||||||  |||||||||||||||||||  ||||| |||||||||| |||||||| ||||||||| |||||||||||||    
T  18302 agactcactcaagttgctcacaaataactctccactcatgtgttt-tcaacctcatgaatcttcccccaaaaggcaccaacccttttcacaagagc 18396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 490661 - 490806
Alignment:
Q  14 tgtttcccaacactagaatctaacccccaaaagagaaccaactcttagcctttgatttcctaaggatcttctcttttggtttcacaagactcacccaagt 113  Q
    ||||||||||| ||||| ||||||||| ||||| |||||||  | |||| ||||||||||||| ||| | |||||||||| ||  ||||||| |||||||    
T  490661 tgtttcccaactctagattctaacccctaaaag-gaaccaatccgtagcttttgatttcctaatgatatactcttttggtctcgtaagactcgcccaagt 490759  T
Q  114 tgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct 161  Q
    |||||| |||| |||||||  | ||||||||||||| |||||||||||    
T  490760 tgctcataaaa-actctcctttgatgtgtttcccaatcccatgaatct 490806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 1609 - 1729
Alignment:
Q  11 aattgtttcccaacactagaatctaacccccaaaagagaaccaactctta----------gcctttgatttcctaaggatcttctcttttggtttcacaa 100  Q
    |||||||||||||| ||||||||||||||| |||||||||||||| ||||          || |||||||||||||||||||||||||||| | || |||    
T  1609 aattgtttcccaactctagaatctaacccc-aaaagagaaccaacacttataagttataagcttttgatttcctaaggatcttctcttttgatctcccaa 1707  T
Q  101 gactcacccaagttgctcacaa 122  Q
    ||||| ||||||||||||||||    
T  1708 gactcgcccaagttgctcacaa 1729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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