View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18120_low_24 (Length: 203)

Name: NF18120_low_24
Description: NF18120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18120_low_24
NF18120_low_24
[»] chr3 (27 HSPs)
chr3 (19-186)||(18165773-18165940)
chr3 (19-186)||(19464970-19465137)
chr3 (19-191)||(19414796-19414968)
chr3 (19-191)||(19437570-19437742)
chr3 (19-191)||(18147442-18147614)
chr3 (26-191)||(18873101-18873266)
chr3 (26-186)||(25463667-25463827)
chr3 (27-190)||(18109052-18109215)
chr3 (19-120)||(19376305-19376406)
chr3 (19-123)||(17942634-17942738)
chr3 (27-118)||(16677895-16677986)
chr3 (27-190)||(17950445-17950608)
chr3 (19-116)||(19400413-19400510)
chr3 (19-191)||(19334621-19334793)
chr3 (26-116)||(14895613-14895703)
chr3 (26-123)||(19381573-19381670)
chr3 (17-187)||(18103962-18104132)
chr3 (26-122)||(19354396-19354492)
chr3 (27-191)||(19393761-19393925)
chr3 (26-123)||(18116645-18116742)
chr3 (26-122)||(18016703-18016799)
chr3 (26-122)||(19352073-19352169)
chr3 (21-124)||(19425366-19425469)
chr3 (27-88)||(19439359-19439420)
chr3 (19-115)||(17726753-17726849)
chr3 (19-115)||(19027982-19028078)
chr3 (26-123)||(19461867-19461966)
[»] chr4 (2 HSPs)
chr4 (26-191)||(15536145-15536310)
chr4 (19-191)||(2709804-2709976)
[»] scaffold0274 (2 HSPs)
scaffold0274 (27-123)||(21304-21400)
scaffold0274 (19-123)||(2789-2893)
[»] chr8 (1 HSPs)
chr8 (27-184)||(8460164-8460321)
[»] scaffold0648 (1 HSPs)
scaffold0648 (19-123)||(3320-3424)
[»] scaffold0640 (1 HSPs)
scaffold0640 (19-123)||(6083-6187)
[»] chr6 (1 HSPs)
chr6 (43-122)||(13666190-13666269)


Alignment Details
Target: chr3 (Bit Score: 120; Significance: 1e-61; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 18165940 - 18165773
Alignment:
Q  19 gaatagccccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  18165940 gaatagtcccttcaaattggttagctctcaatatgaccacttctaacttttgtgaaatcaaaattggtatggttccagaaaattcattttctcccaagtt 18165841  T
Q  119 catgattctcaattggtccaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 186  Q
    |||||||  |||||||| |||||  |||||||||||||||||||||||  ||||||||||||||||||    
T  18165840 catgatttccaattggttcaaatcggagaagtgcaatgaaacttcaccaaatagcctattactccaca 18165773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 19465137 - 19464970
Alignment:
Q  19 gaatagccccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| |||||||||||||||||||||||||| ||||||||    
T  19465137 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagtcttgtgaaatcaagataggtatggttccagaaaattcattttcgcccaagtt 19465038  T
Q  119 catgattctcaattggtccaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 186  Q
    |||| ||  |||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  19465037 catgttttccaattggttcaaattagagaagtgcaacgaaacttcaccagatagcctattactccaca 19464970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 19414968 - 19414796
Alignment:
Q  19 gaatagccccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    |||||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  19414968 gaatagtcccttcaaatcggttatctctcaatatgaccacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaatt 19414869  T
Q  119 catgattctcaattggtccaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 191  Q
    ||||| ||| ||||| | | ||  |||| ||| ||| | ||||||||| ||||||||||||||||||||||||    
T  19414868 catgactcttaattgcttccaaccagagcagtacaaaggaacttcaccagatagcctattactccacaggttc 19414796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 19437742 - 19437570
Alignment:
Q  19 gaatagccccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    |||||| |||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19437742 gaatagtcccttcaaatttattagctctcaatatgaccacttttaagttttgtgacatcatgattggtatggttccagaaaattcattttctcctaagtt 19437643  T
Q  119 catgattctcaattggtccaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 191  Q
    |||| ||  |||||| | |   |||||||||| ||||| || ||| ||||| | |||||||||||||||||||    
T  19437642 catggtttccaattgtttccggttagagaagtacaatggaagttcccctgacaacctattactccacaggttc 19437570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 18147614 - 18147442
Alignment:
Q  19 gaatagccccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    |||||| |||||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18147614 gaatagtcccttcaaatttattagctctcaatatgaccactagtaagttttgtgacatcatgattggtatggttccagaaaattcattttctcctaagtt 18147515  T
Q  119 catgattctcaattggtccaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 191  Q
    |||||||  |||||| | | | | |||||||| ||||| || ||| || || | |||||||||||||||||||    
T  18147514 catgatttccaattgtttccagtaagagaagtacaatggaagttccccagacaacctattactccacaggttc 18147442  T

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Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 191
Target Start/End: Original strand, 18873101 - 18873266
Alignment:
Q  26 cccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatgatt 125  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| |||     
T  18873101 cccttcaaattggttagctctcaatatgactacttctaggttttgtgacatcatgaatggtatgtttccagaaaattcattttctcccaaattcaagatc 18873200  T
Q  126 ctcaattggtccaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 191  Q
      ||| || | | | | ||||| |||   |  ||||||||| ||||||||||||||||||||||||    
T  18873201 tgcaactgtttccattcagagaggtgatcttgaacttcaccagatagcctattactccacaggttc 18873266  T

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Target: chr3; HSP #7
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 25463827 - 25463667
Alignment:
Q  26 cccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatgatt 125  Q
    ||||||||||||||| ||||||||||||||||||||||||| | ||| |||  | |||||||||||||||||||||||||||||||||||||||||||||    
T  25463827 cccttcaaattggtttgctctcaatatgaccacttctaagtatagtggcatgttcattggtatggttccagaaaattcattttctcccaagttcatgatt 25463728  T
Q  126 ctcaattggtccaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 186  Q
      ||||||   | ||| ||||| ||| | |  ||||||||| |||||||||||| ||||||    
T  25463727 tccaattgtctccaatcagagaggtgtactagaacttcaccagatagcctattattccaca 25463667  T

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Target: chr3; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 27 - 190
Target Start/End: Complemental strand, 18109215 - 18109052
Alignment:
Q  27 ccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatgattc 126  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||| |   |||||||||| ||| ||||||||||||||||||||||||||||||||     
T  18109215 ccttcaaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattcattttctcccaagttcatgattt 18109116  T
Q  127 tcaattggtccaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggtt 190  Q
     ||||||   | ||| ||||| |||   |  ||||||||| ||||||||||||||||| |||||    
T  18109115 ccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggtt 18109052  T

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Target: chr3; HSP #9
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 19376406 - 19376305
Alignment:
Q  19 gaatagccccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    |||||| |||||||||||  |||||||||||||||||||  | |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  19376406 gaatagtcccttcaaatttattagctctcaatatgaccaaatataagttttgtgacatcttgattggtatggttccagaaaattcattttctcccaaatt 19376307  T
Q  119 ca 120  Q
    ||    
T  19376306 ca 19376305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 17942738 - 17942634
Alignment:
Q  19 gaatagccccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |   ||||||||||||||||| |||| |||||||||||||| ||    
T  17942738 gaatagtcccttcaaattggttagctctcaatatgaccacttgtaagttttgtgataagctgattggtatggttccaaaaaactcattttctcccaaatt 17942639  T
Q  119 catga 123  Q
    |||||    
T  17942638 catga 17942634  T

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Target: chr3; HSP #11
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 16677986 - 16677895
Alignment:
Q  27 ccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    |||||||| ||||||||||||||||| || ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||    
T  16677986 ccttcaaaatggttagctctcaatataacaacttctaagttttgtgacatcttaattggtatggttccagaaaattcattttctcctaagtt 16677895  T

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Target: chr3; HSP #12
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 27 - 190
Target Start/End: Complemental strand, 17950608 - 17950445
Alignment:
Q  27 ccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatgattc 126  Q
    ||||| ||||||||||||||||||||||| |||||||| |||||||| |   |||||||||| ||| ||||||||||||||||||||||||||||||||     
T  17950608 ccttctaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattcattttctcccaagttcatgattt 17950509  T
Q  127 tcaattggtccaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggtt 190  Q
     ||||||   | ||| ||||| |||   |  ||||||||| ||||||||||||||||| |||||    
T  17950508 ccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggtt 17950445  T

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Target: chr3; HSP #13
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 19400510 - 19400413
Alignment:
Q  19 gaatagccccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaag 116  Q
    |||||| ||||||||||||||||||||||| |||||| ||||||||||||||||| |   |||||||||||||||| |||||||||||||||||||||    
T  19400510 gaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaag 19400413  T

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Target: chr3; HSP #14
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 19334793 - 19334621
Alignment:
Q  19 gaatagccccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    |||||| |||||||||||| || ||||||||||||| || || ||||||||||||||||    |||||||| ||||||||||||||||||||||||| ||    
T  19334793 gaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatgcttccagaaaattcattttctcccaaatt 19334694  T
Q  119 catgattctcaattggtccaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 191  Q
     |||| ||||||||| | | ||| |||||  |||  |  ||||||||| || |||||||||||||| ||||||    
T  19334693 tatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccataggttc 19334621  T

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Target: chr3; HSP #15
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 14895613 - 14895703
Alignment:
Q  26 cccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaag 116  Q
    ||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||||    
T  14895613 cccttcaaattggttagatctcaatataaccacttgtaagtattgtgacatcatggttggtatagttccataaaattcattttctcccaag 14895703  T

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Target: chr3; HSP #16
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 19381670 - 19381573
Alignment:
Q  26 cccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatga 123  Q
    |||||||||||||||||||||||||||||| | ||||||||||| ||| |   | ||||||||||||||||||||||||||||||||||| |||||||    
T  19381670 cccttcaaattggttagctctcaatatgacaatttctaagttttctgataagttcattggtatggttccagaaaattcattttctcccaaattcatga 19381573  T

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Target: chr3; HSP #17
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 18104132 - 18103962
Alignment:
Q  17 cagaatagccccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaag 116  Q
    |||||| | |||||||||||| || ||||||||||||| |||||||||||||||||||||    | |||||| ||||||||||||||||||||||| | |    
T  18104132 cagaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtatagttccagaaaattcattttctcctacg 18104033  T
Q  117 ttcatgattctcaattggtccaaattagagaagtgcaatgaaacttcacctgatagcctattactccacag 187  Q
    |||||| |   |||||| | ||| |||||||||| ||||| || ||  || || | |||||||||||||||    
T  18104032 ttcatggtctgcaattgtttcaagttagagaagtacaatggaagtttccccgacaacctattactccacag 18103962  T

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Target: chr3; HSP #18
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 19354492 - 19354396
Alignment:
Q  26 cccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatg 122  Q
    ||||||||||||||| ||||||||||||||||||  ||||  |||||||||  ||||||||||||||||||||||||| ||  ||||||||||||||    
T  19354492 cccttcaaattggttggctctcaatatgaccactgttaaggattgtgacattttgattggtatggttccagaaaattcgttagctcccaagttcatg 19354396  T

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Target: chr3; HSP #19
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 27 - 191
Target Start/End: Complemental strand, 19393925 - 19393761
Alignment:
Q  27 ccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatgattc 126  Q
    ||||||||||| || |||||||||||||||||| |||||||||||| ||||   | ||||||| |||||||||||||||||| |||||| ||||||||      
T  19393925 ccttcaaattgattggctctcaatatgaccactactaagttttgtggcatcccaactggtatgtttccagaaaattcattttttcccaaattcatgatct 19393826  T
Q  127 tcaattggtccaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 191  Q
     ||||||   | ||| ||||| ||  |||| ||||||||| || ||| |||||||||| ||||||    
T  19393825 gcaattgtctccaatcagagaggtttaatggaacttcaccagacagcttattactccataggttc 19393761  T

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Target: chr3; HSP #20
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 18116742 - 18116645
Alignment:
Q  26 cccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatga 123  Q
    |||||||||||||||| |||||| |||||| |||||||| | |||||  ||  | | |||||||||||||||||||||||||||||||||||||||||    
T  18116742 cccttcaaattggttacctctcagtatgactacttctaaatattgtggtatgttcaatggtatggttccagaaaattcattttctcccaagttcatga 18116645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 18016799 - 18016703
Alignment:
Q  26 cccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatg 122  Q
    |||||||||||  || ||||||||||||||||||  ||||||||||||||||   | ||||||| |||||||||||||||||| |||||||||||||    
T  18016799 cccttcaaatttattggctctcaatatgaccactcttaagttttgtgacatccctactggtatgtttccagaaaattcattttttcccaagttcatg 18016703  T

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Target: chr3; HSP #22
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 19352169 - 19352073
Alignment:
Q  26 cccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatg 122  Q
    |||||||||||  || ||||| |||||||||||| |||||||||||||||||   |  |||||| ||||||||||||||||||||||||||||||||    
T  19352169 cccttcaaatttattggctctaaatatgaccactactaagttttgtgacatccctaccggtatgtttccagaaaattcattttctcccaagttcatg 19352073  T

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Target: chr3; HSP #23
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 19425469 - 19425366
Alignment:
Q  21 atagccccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttca 120  Q
    |||| |||||||||||||||||||||||||||||| |||||||| |||||||| |   | ||||||||| |||| ||||||| ||||||||||||  |||    
T  19425469 atagtcccttcaaattggttagctctcaatatgacgacttctaatttttgtgataagttcattggtatgattcctgaaaatttattttctcccaaaatca 19425370  T
Q  121 tgat 124  Q
    ||||    
T  19425369 tgat 19425366  T

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Target: chr3; HSP #24
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 19439420 - 19439359
Alignment:
Q  27 ccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtat 88  Q
    ||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||    
T  19439420 ccttcaaattggttatctctcaatattaccactcctaagttttgtgacatcatgattggtat 19439359  T

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Target: chr3; HSP #25
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 17726753 - 17726849
Alignment:
Q  19 gaatagccccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaa 115  Q
    |||||| ||||||||| || ||| ||| ||||||||||| |||||||| ||||||||||   | ||||||| |||||||||||||||||||||||||    
T  17726753 gaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtgacatctctactggtatgtttccagaaaattcattttctcccaa 17726849  T

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Target: chr3; HSP #26
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 19027982 - 19028078
Alignment:
Q  19 gaatagccccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaa 115  Q
    |||||| ||||||||| || ||| ||| ||||||||||| |||||||| ||||||||||   | ||||||| |||||||||||||||||||||||||    
T  19027982 gaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtgacatctctactggtatgtttccagaaaattcattttctcccaa 19028078  T

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Target: chr3; HSP #27
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 19461966 - 19461867
Alignment:
Q  26 cccttcaaattggttagctctca--atatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatga 123  Q
    |||||||||||||||| ||||||  ||||||  |||||||| | |||||  ||  | | |||||||||||||||||||||||||||||||||||||||||    
T  19461966 cccttcaaattggttacctctcagtatatgaatacttctaaatattgtggtatgttcaatggtatggttccagaaaattcattttctcccaagttcatga 19461867  T

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Target: chr4 (Bit Score: 82; Significance: 6e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 26 - 191
Target Start/End: Complemental strand, 15536310 - 15536145
Alignment:
Q  26 cccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatgatt 125  Q
    |||||||||||  || | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  15536310 cccttcaaatttattggttctcaatatgaccactactaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatggtt 15536211  T
Q  126 ctcaattggtccaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 191  Q
      |||||| | | ||  ||||| ||||| || ||||||||| || |  |||||| |||||||||||    
T  15536210 tgcaattgtttcgaagcagagaggtgcattggaacttcaccagacaaactattattccacaggttc 15536145  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 2709804 - 2709976
Alignment:
Q  19 gaatagccccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    |||||| ||||| |||||||||||||||||||||||  ||||  || | ||| |||||| |||||||||| ||||||||||||||||||||||| | |||    
T  2709804 gaatagtccctttaaattggttagctctcaatatgagaactttcaaatcttgcgacatcttgattggtatagttccagaaaattcattttctcctaggtt 2709903  T
Q  119 catgattctcaattggtccaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 191  Q
    ||||  |  ||||   | | ||||||||| ||||| || ||||||||| |||||  |||||||||||| ||||    
T  2709904 catggcttgcaatccataccaattagagaggtgcattggaacttcaccagatagtttattactccacaagttc 2709976  T

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Target: scaffold0274 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 21400 - 21304
Alignment:
Q  27 ccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatga 123  Q
    ||||| |||||||||||||| ||||||||||||||||| | ||||| |||  |||||||||||||||||||||| |||||||||||||| |||||||    
T  21400 ccttcgaattggttagctcttaatatgaccacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttctcccaaattcatga 21304  T

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Target: scaffold0274; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 2789 - 2893
Alignment:
Q  19 gaatagccccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    |||||| |||||| |||||||||||||| |||||||| |||||||| | ||||| |||  |||||||||||||||||||||| ||||||||| |||| ||    
T  2789 gaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaatt 2888  T
Q  119 catga 123  Q
    |||||    
T  2889 catga 2893  T

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Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 8460321 - 8460164
Alignment:
Q  27 ccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatgattc 126  Q
    |||||||||||||| ||||||||||||||||||||||| |   |||||||  | ||||| |||||||||||||||| ||||||||||||||| || |||     
T  8460321 ccttcaaattggttggctctcaatatgaccacttctaaataccgtgacatgttcattggaatggttccagaaaattgattttctcccaagttaatcattt 8460222  T
Q  127 tcaattggtccaaattagagaagtgcaatgaaacttcacctgatagcctattactcca 184  Q
     |||||| | ||||| | ||| || ||  | |||||| || |||||||||||||||||    
T  8460221 ccaattgtttcaaatcaaagaggtccaccggaacttcgccagatagcctattactcca 8460164  T

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Target: scaffold0648 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 3320 - 3424
Alignment:
Q  19 gaatagccccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    |||||| |||||| |||||||||||||| |||||||| |||||||| | ||||| |||  |||||||||||||||||||||| ||||||||| |||| ||    
T  3320 gaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaatt 3419  T
Q  119 catga 123  Q
    |||||    
T  3420 catga 3424  T

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Target: scaffold0640 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 6187 - 6083
Alignment:
Q  19 gaatagccccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 118  Q
    |||||| |||||| |||||||||||||| |||||||| |||||||| | ||||| |||  |||||||||||||||||||||| ||||||||| |||| ||    
T  6187 gaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaatt 6088  T
Q  119 catga 123  Q
    |||||    
T  6087 catga 6083  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 13666190 - 13666269
Alignment:
Q  43 ctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatg 122  Q
    ||||||||||||||||||  |||||| |||| |||| ||||| ||||||||||  ||||||||||||||| |||||||||    
T  13666190 ctctcaatatgaccacttgaaagtttggtgaaatcaagattgttatggttccattaaattcattttctcctaagttcatg 13666269  T

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