View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18120_low_26 (Length: 203)

Name: NF18120_low_26
Description: NF18120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18120_low_26
NF18120_low_26
[»] chr1 (3 HSPs)
chr1 (11-202)||(12609844-12610035)
chr1 (14-202)||(15885832-15886020)
chr1 (14-202)||(12636943-12637131)
[»] chr3 (12 HSPs)
chr3 (30-202)||(23036128-23036300)
chr3 (29-202)||(23145877-23146050)
chr3 (24-202)||(23148710-23148888)
chr3 (26-202)||(23140000-23140176)
chr3 (57-202)||(23024257-23024402)
chr3 (54-202)||(22971933-22972081)
chr3 (40-202)||(23039009-23039171)
chr3 (54-202)||(22946386-22946534)
chr3 (24-202)||(23017014-23017192)
chr3 (24-142)||(23032666-23032784)
chr3 (54-202)||(22986259-22986407)
chr3 (7-104)||(22941542-22941639)
[»] scaffold0059 (1 HSPs)
scaffold0059 (20-202)||(62101-62283)
[»] chr6 (2 HSPs)
chr6 (29-202)||(21779770-21779943)
chr6 (54-203)||(12438286-12438435)
[»] scaffold0554 (1 HSPs)
scaffold0554 (24-202)||(6624-6802)
[»] chr2 (1 HSPs)
chr2 (46-120)||(2433634-2433708)
[»] chr5 (5 HSPs)
chr5 (44-120)||(7154485-7154561)
chr5 (45-196)||(31187742-31187893)
chr5 (45-196)||(31225885-31226036)
chr5 (135-202)||(41465811-41465878)
chr5 (45-120)||(31177679-31177754)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 2e-66; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 12609844 - 12610035
Alignment:
Q  11 catcaatgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccct 110  Q
    |||||||| |||||||||||||||||||||||||||||||||  | |||||||||||||||||||| || || || |||||||||||||||||| |||||    
T  12609844 catcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccct 12609943  T
Q  111 ttgtaatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcccatgcatt 202  Q
    ||||| |||| ||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| |||||||||||| |||||||||||    
T  12609944 ttgtagtcaatagagctaccgatgaatctctccggataaaacttctctggttcagtccagtactttggatctcttccaatcgcccatgcatt 12610035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 15886020 - 15885832
Alignment:
Q  14 caatgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttg 113  Q
    ||||| |||||||||||||||||||| |||||||||||||||||| || |||||||||||||| |  || ||||||||||||||||||||| |||||||     
T  15886020 caatgcaagtgccaactcaacatttaccaaaccaaatgttatgcccgggcatattcttcttccagaaccaaaaggaatgtactcaaaattattcccttta 15885921  T
Q  114 taatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcccatgcatt 202  Q
    || |||| ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||    
T  15885920 tagtcaatagagctaccaatgaatctctctggataaaacctctctggttcagtccaatactttggatctcttccaatcgcccatgcatt 15885832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 12636943 - 12637131
Alignment:
Q  14 caatgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttg 113  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || || ||||||||||||||||||||| | ||||||    
T  12636943 caatgcaagtgccaactcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttg 12637042  T
Q  114 taatcaaaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcccatgcatt 202  Q
    || |||| ||||||||| ||||||||||| |||| ||||||||| ||||||||||| ||||||| |||||| ||||||| |||||||||    
T  12637043 tagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatt 12637131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 2e-38; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 23036128 - 23036300
Alignment:
Q  30 tcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctac 129  Q
    |||| |||| |||||||||||||  | ||||| ||||||||||||||||| || ||||||||||||||||| ||| |||||||||| |||| || |||      
T  23036128 tcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggcaccaaaaggaatgtactcaaagttactccctttgtagtcaatagcgctgt 23036227  T
Q  130 cgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcccatgcatt 202  Q
    ||||||||||||| |||||||| ||||| ||||||||||| || |||| ||||||| |||||||||| |||||    
T  23036228 cgatgaatctctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatt 23036300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 23145877 - 23146050
Alignment:
Q  29 ctcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagcta 128  Q
    ||||| |||| |||||||||||||  | |||||||||||||||||||| || || ||||||||||||||||| ||| ||||||| || |||| |  |||     
T  23145877 ctcaatatttgtcaaaccaaatgtgctccctggacatattcttcttccagcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctg 23145976  T
Q  129 ccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcccatgcatt 202  Q
     ||||||||||||| |||||||||||||| ||||||||||| || |||| ||||||| ||| |||||| |||||    
T  23145977 tcgatgaatctctctggataaaacctctctggttcagtccagtagtttggatctcttgcaactgcccaagcatt 23146050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 24 - 202
Target Start/End: Original strand, 23148710 - 23148888
Alignment:
Q  24 gccaactcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaag 123  Q
    |||| ||||| |||| ||||||||||| |  | ||||| ||||||||||||||||| || |||||||||||||| || ||| ||||||| || |||| |     
T  23148710 gccagctcaatatttctcaaaccaaatatgctccctgggcatattcttcttccggcaccaaaaggaatgtactcgaagttactccctttatagtcaatat 23148809  T
Q  124 agctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcccatgcatt 202  Q
     |||  | ||||||||||| |||||||||||||| ||||||||||| || |||||||||||| |||||||||| |||||    
T  23148810 cgctttcaatgaatctctctggataaaacctctctggttcagtccagtagtttgaatctcttgcaattgcccaagcatt 23148888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 23140000 - 23140176
Alignment:
Q  26 caactcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagag 125  Q
    ||||||||||||| ||||||||||| |  | ||||| |||||||||| ||| || || ||||||||||||||||||| | ||||||| || |||| || |    
T  23140000 caactcaacatttctcaaaccaaatatgcttcctgggcatattcttcgtcccgcaccaaaaggaatgtactcaaaatcactccctttatagtcaatagtg 23140099  T
Q  126 ctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcccatgcatt 202  Q
     | || ||||||||||| ||||||||  |||| ||||||||||| || |||| ||||||  | ||||||||||||||    
T  23140100 tttcccatgaatctctctggataaaatttctctggttcagtccagtagtttggatctctcgcgattgcccatgcatt 23140176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 57 - 202
Target Start/End: Original strand, 23024257 - 23024402
Alignment:
Q  57 cctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacctct 156  Q
    |||||||||||||||| ||| || || |||||||| |||||||| ||| ||||||| || |||| |   ||| ||||||||||||| |||||||||||||    
T  23024257 cctggacatattcttcgtcccgcaccaaaaggaatatactcaaagttactccctttatagtcaatatcactatcgatgaatctctctggataaaacctct 23024356  T
Q  157 caggttcagtccaatactttgaatctcttccaattgcccatgcatt 202  Q
    | ||||| ||||| || |||| ||||||| |||||||||| |||||    
T  23024357 ctggttcggtccagtaatttggatctcttgcaattgcccaagcatt 23024402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 54 - 202
Target Start/End: Original strand, 22971933 - 22972081
Alignment:
Q  54 atgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacc 153  Q
    ||||||||||| ||||||||||| || || || ||||||||||||||||| || |||||| |||||| ||| ||| | || ||||| || |||||||||     
T  22971933 atgcctggacaaattcttcttccagcaccaaatggaatgtactcaaaatttgttcctttgaaatcaagagaactatcaataaatctttcaggataaaact 22972032  T
Q  154 tctcaggttcagtccaatactttgaatctcttccaattgcccatgcatt 202  Q
    | || || ||||||||||| |||| ||| |||||||||||||| |||||    
T  22972033 tatctggatcagtccaatattttggatcccttccaattgcccaagcatt 22972081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 40 - 202
Target Start/End: Original strand, 23039009 - 23039171
Alignment:
Q  40 tcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatct 139  Q
    |||||||||||||  | ||||| ||||||||||||||||| || ||||||||||||||| ||||| | ||||| || ||||  | |||  | | ||||||    
T  23039009 tcaaaccaaatgtgctccctgggcatattcttcttccggcaccaaaaggaatgtactcataattacttcctttatagtcaatggcgctgtcaaggaatct 23039108  T
Q  140 ctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcccatgcatt 202  Q
    ||| |||||||| ||||| || |||||||| || |||| ||||||| |||||||||| |||||    
T  23039109 ctctggataaaatctctccggctcagtccagtaatttggatctcttgcaattgcccaagcatt 23039171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 54 - 202
Target Start/End: Original strand, 22946386 - 22946534
Alignment:
Q  54 atgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacc 153  Q
    ||||| ||||| ||||| |||||||| || || ||||||||||||||||| || |||||| |||||| ||| ||| | || ||||| || |||||||||     
T  22946386 atgcccggacaaattctccttccggcaccaaatggaatgtactcaaaatttgttcctttgaaatcaacagaactatcaataaatctttcaggataaaact 22946485  T
Q  154 tctcaggttcagtccaatactttgaatctcttccaattgcccatgcatt 202  Q
    | || || ||||||||||| |||| ||| |||||||||||||| |||||    
T  22946486 tatctggatcagtccaatattttggatcccttccaattgcccaagcatt 22946534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 202
Target Start/End: Original strand, 23017014 - 23017192
Alignment:
Q  24 gccaactcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaag 123  Q
    ||||||||||||||| ||||||| |||||  | || || ||||||||||||||  | || ||||||||||| || || ||| ||||||| || |||| |     
T  23017014 gccaactcaacatttctcaaaccgaatgtactcccagggcatattcttcttccaccaccaaaaggaatgtattcgaagttactccctttatagtcaatac 23017113  T
Q  124 agctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcccatgcatt 202  Q
     | |  | ||||||||||| ||||||||| |||| ||||||||||| || |||| ||||||| | |||||||| |||||    
T  23017114 cgttgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcatt 23017192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 23032666 - 23032784
Alignment:
Q  24 gccaactcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaag 123  Q
    |||| ||||| |||| |||||||||||||  | ||||| ||||||||||||||||| || || |||||||||||||||||| | ||||| || |||| ||    
T  23032666 gccagctcaatatttctcaaaccaaatgtactccctgggcatattcttcttccggcaccaaagggaatgtactcaaaattacttcctttatagtcaatag 23032765  T
Q  124 agctaccgatgaatctctc 142  Q
     |||  |||||||||||||    
T  23032766 cgctgtcgatgaatctctc 23032784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 202
Target Start/End: Original strand, 22986259 - 22986407
Alignment:
Q  54 atgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacc 153  Q
    ||||| ||||| ||||| ||||| || || || |||||||||||||||||||| |||||| |||||| ||| ||| | || || ||||| |||||||||     
T  22986259 atgccaggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctcaggataaaact 22986358  T
Q  154 tctcaggttcagtccaatactttgaatctcttccaattgcccatgcatt 202  Q
    | || || ||| ||||||| || | ||| | |||||| ||||| |||||    
T  22986359 tatcggggtcattccaatatttaggatcccgtccaatggcccaagcatt 22986407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 22941639 - 22941542
Alignment:
Q  7 acatcatcaatgaaagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaatta 104  Q
    |||||| ||||| |||||   |||||||||| | ||||||||||||||  || ||||| ||||||||||| || || || |||||| |||||||||||    
T  22941639 acatcaacaatgcaagtgggtactcaacattgaccaaaccaaatgttactcccggacacattcttcttccagcaccaaatggaatgaactcaaaatta 22941542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 62101 - 62283
Alignment:
Q  20 aagtgccaactcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatca 119  Q
    |||||||| ||||| | | |||||||||||| |  ||||||| ||||||||| |||| || || |||||||||||||| |||||| |||| ||||| |||    
T  62101 aagtgccagctcaagactcatcaaaccaaatttactgcctgggcatattctttttccagcaccaaaaggaatgtactcgaaattattcccgttgtagtca 62200  T
Q  120 aaagagctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcccatgcatt 202  Q
    | ||| ||||| ||||||||||| |||||||||||||| ||||| ||||| ||| ||| ||||||||| ||||||||||||||    
T  62201 atagaactaccaatgaatctctctggataaaacctctctggttccgtccagtaccttggatctcttccgattgcccatgcatt 62283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 21779770 - 21779943
Alignment:
Q  29 ctcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagcta 128  Q
    ||||| |||| |||||||||||||  | ||||| ||||||||||||||||| || || |||||||||||||||||| |||||||  | |||| |  ||||    
T  21779770 ctcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggcaccaaatggaatgtactcaaaattactccctttaaagtcaatatcgcta 21779869  T
Q  129 ccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcccatgcatt 202  Q
     ||||||||||||| ||||||||| |||| ||||||||||| || |||| ||||||| |||||||||| |||||    
T  21779870 tcgatgaatctctctggataaaacatctctggttcagtccagtagtttggatctcttgcaattgcccaagcatt 21779943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 12438286 - 12438435
Alignment:
Q  54 atgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccggataaaacc 153  Q
    ||||| ||||| ||||||||||| || || ||||| ||  |||| ||||||| ||||||||||||||  |  | | | || |||||||| |||| ||||     
T  12438286 atgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacaatcaataaatctctcaggattaaact 12438385  T
Q  154 tctcaggttcagtccaatactttgaatctcttccaattgcccatgcattc 203  Q
    | ||   |||| ||||||||||||  ||||||||||||||||||||||||    
T  12438386 tttctccttcattccaatactttgggtctcttccaattgcccatgcattc 12438435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 24 - 202
Target Start/End: Complemental strand, 6802 - 6624
Alignment:
Q  24 gccaactcaacatttatcaaaccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaag 123  Q
    |||| |||||||||| ||||||||||| |  | ||||| || ||||||||||| || || |||||||||||||||||||||  |||||| || |||| ||    
T  6802 gccagctcaacatttctcaaaccaaatatacttcctgggcaaattcttcttccagcaccaaaaggaatgtactcaaaattaccccctttatagtcaatag 6703  T
Q  124 agctaccgatgaatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcccatgcatt 202  Q
     |||  |  |||||||||| |||||||||||||| |||||||||||  | |||| ||||||| |||||||||| |||||    
T  6702 tgctgtcagtgaatctctctggataaaacctctctggttcagtccagaagtttggatctcttgcaattgcccaagcatt 6624  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 2433708 - 2433634
Alignment:
Q  46 caaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaa 120  Q
    ||||||| || |||||||||||||| ||||| || || ||||| |||||||||||||||| ||||||||||||||    
T  2433708 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaaattagaccctttgtaatcaa 2433634  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 7154561 - 7154485
Alignment:
Q  44 accaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaa 120  Q
    ||||||||  ||||||||||| ||||||||||| || || |||||||| |||||||||||| | |||||| ||||||    
T  7154561 accaaatgacatgcctggacacattcttcttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaa 7154485  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 31187742 - 31187893
Alignment:
Q  45 ccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccg 144  Q
    |||||||  ||||||||||| ||||||||||| || ||||| || ||||| |||||||| || |||||| ||||||  | ||||  ||  || ||||| |    
T  31187742 ccaaatgccatgcctggacacattcttcttccagcaccgaacggtatgtattcaaaatttgtgcctttgaaatcaattgtgctattgagaaacctctcag 31187841  T
Q  145 gataaaacctctcaggttcagtccaatactttgaatctcttccaattgccca 196  Q
    | | ||| ||||||| ||| | ||||||| ||  ||||||||||||||||||    
T  31187842 gtttaaaactctcagcttctgcccaatacctttcatctcttccaattgccca 31187893  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 196
Target Start/End: Complemental strand, 31226036 - 31225885
Alignment:
Q  45 ccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaaaagagctaccgatgaatctctccg 144  Q
    |||||||  ||||||||||| ||||||||||| || ||||| || ||||| |||||||| || |||||| ||||||  | ||||  ||  || ||||| |    
T  31226036 ccaaatgccatgcctggacacattcttcttccagcaccgaacggtatgtattcaaaatttgtgcctttgaaatcaattgtgctattgagaaacctctcag 31225937  T
Q  145 gataaaacctctcaggttcagtccaatactttgaatctcttccaattgccca 196  Q
    | | ||| ||||||| ||| | ||||||| ||  ||||||||||||||||||    
T  31225936 gtttaaaactctcagcttctgcccaatacctttcatctcttccaattgccca 31225885  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 41465878 - 41465811
Alignment:
Q  135 aatctctccggataaaacctctcaggttcagtccaatactttgaatctcttccaattgcccatgcatt 202  Q
    ||||||||||||  |||| | || |||||| |||||||||||| |||||||||||| |||||||||||    
T  41465878 aatctctccggaataaacttttccggttcactccaatactttggatctcttccaatcgcccatgcatt 41465811  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 31177679 - 31177754
Alignment:
Q  45 ccaaatgttatgcctggacatattcttcttccggcgccgaaaggaatgtactcaaaattagtccctttgtaatcaa 120  Q
    |||||||  ||||||||||| ||||||||||| || ||||| || ||||||||||| || || |||||| ||||||    
T  31177679 ccaaatgccatgcctggacacattcttcttccagcaccgaacggtatgtactcaaagtttgtacctttgaaatcaa 31177754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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