View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18120_low_6 (Length: 458)

Name: NF18120_low_6
Description: NF18120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18120_low_6
NF18120_low_6
[»] chr3 (8 HSPs)
chr3 (20-194)||(33714855-33715029)
chr3 (28-185)||(33708983-33709140)
chr3 (24-183)||(36811038-36811197)
chr3 (38-177)||(37587571-37587710)
chr3 (37-194)||(37580820-37580977)
chr3 (42-177)||(36875527-36875660)
chr3 (24-112)||(37582300-37582388)
chr3 (255-447)||(54346536-54346729)
[»] chr7 (4 HSPs)
chr7 (289-448)||(29760083-29760243)
chr7 (26-192)||(18724354-18724524)
chr7 (255-447)||(8019949-8020142)
chr7 (277-447)||(48618735-48618906)
[»] chr8 (6 HSPs)
chr8 (255-447)||(1635799-1635992)
chr8 (103-188)||(17636407-17636492)
chr8 (295-447)||(456600-456753)
chr8 (103-188)||(18315279-18315364)
chr8 (279-447)||(26616953-26617122)
chr8 (150-188)||(21235613-21235651)
[»] chr2 (3 HSPs)
chr2 (255-447)||(13186689-13186882)
chr2 (277-443)||(7305309-7305476)
chr2 (110-188)||(32785778-32785856)
[»] chr1 (6 HSPs)
chr1 (255-447)||(23949499-23949692)
chr1 (277-447)||(23085137-23085309)
chr1 (103-188)||(52082589-52082674)
chr1 (104-188)||(52092786-52092870)
chr1 (255-447)||(5308443-5308636)
chr1 (277-447)||(50952794-50952966)
[»] chr4 (5 HSPs)
chr4 (277-447)||(34390032-34390203)
chr4 (132-188)||(8187097-8187153)
chr4 (131-188)||(1548430-1548487)
chr4 (103-188)||(8184036-8184121)
chr4 (148-188)||(1519148-1519188)
[»] chr5 (4 HSPs)
chr5 (284-447)||(34080972-34081136)
chr5 (277-447)||(18259366-18259536)
chr5 (103-187)||(41901542-41901626)
chr5 (103-188)||(32267483-32267568)
[»] chr6 (1 HSPs)
chr6 (148-188)||(12102319-12102359)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 33715029 - 33714855
Alignment:
Q  20 gtacgcagttgtctaacactagcctcactcccttctccgtgacatgatgacaatcttccaggtccagatgtagaagccgagggcaactctttgagatcgc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33715029 gtacgcagttgtctaacactagcctcactcccttctccgtgacatgatgacaatcttccaggtccagatgtagaagccgagggcaactctttgaaatcgc 33714930  T
Q  120 atacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagttgatcaa 194  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33714929 atacaatgcgccatcatcaattcttgagtttgacaagttcagcacctccagtttggaaacttcaaagttgatcaa 33714855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 33709140 - 33708983
Alignment:
Q  28 ttgtctaacactagcctcactcccttctccgtgacatgatgacaatcttccaggtccagatgtagaagccgagggcaactctttgagatcgcatacaatg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33709140 ttgtctaacactagcctcactcccttctccgtgacatgatgacatccttccaggtccagatgtagaagccgagggcaactctttgagattgcatacaatg 33709041  T
Q  128 cgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaa 185  Q
    | ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  33709040 caccatcatcaattcttgagtctgacaagttcagcacctccagtttggaaacctcaaa 33708983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 24 - 183
Target Start/End: Complemental strand, 36811197 - 36811038
Alignment:
Q  24 gcagttgtctaacactagcctcactcccttctccgtgacatgatgacaatcttccaggtccagatgtagaagccgagggcaactctttgagatcgcatac 123  Q
    |||||| |||| |||| |||  ||||||||||| ||||||| || ||||| ||||||||| || |||||||||||||||||| |||||||||| ||||||    
T  36811197 gcagttttctaccacttgccggactcccttctctgtgacataataacaatgttccaggtcaagttgtagaagccgagggcaaatctttgagattgcatac 36811098  T
Q  124 aatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttca 183  Q
    | ||| | || |||||||||||| || |||||||||| |||||||||||||||| |||||    
T  36811097 agtgctctattatcaattcttgaatgggacaagttcaacacctccagtttggaagcttca 36811038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 38 - 177
Target Start/End: Complemental strand, 37587710 - 37587571
Alignment:
Q  38 ctagcctcactcccttctccgtgacatgatgacaatcttccaggtccagatgtagaagccgagggcaactctttgagatcgcatacaatgcgccatcatc 137  Q
    ||||||||||||||||||| ||||||| || ||| | || ||||||||  || ||||||| ||||||| |||||||||||||||||||| |   ||||||    
T  37587710 ctagcctcactcccttctctgtgacatcataacagtgtttcaggtccaattgcagaagccaagggcaaatctttgagatcgcatacaatactttatcatc 37587611  T
Q  138 aattcttgagtgtgacaagttcagcacctccagtttggaa 177  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  37587610 aattcttgagtgtgacaagttcaatacctccagtttggaa 37587571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 37 - 194
Target Start/End: Complemental strand, 37580977 - 37580820
Alignment:
Q  37 actagcctcactcccttctccgtgacatgatgacaatcttccaggtccagatgtagaagccgagggcaactctttgagatcgcatacaatgcgccatcat 136  Q
    ||||| |||||||||||||| ||||||| || ||||  ||  | |||||| || ||||||||||||||| || |||||||| |||||||| |   |||||    
T  37580977 actagtctcactcccttctctgtgacatcattacaaaattgtaagtccagttgcagaagccgagggcaaatcattgagatcacatacaatactttatcat 37580878  T
Q  137 caattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagttgatcaa 194  Q
    |||||||||||| |||||||||||  ||||| ||||||||| ||||| ||||||||||    
T  37580877 caattcttgagtttgacaagttcaatacctcgagtttggaagcttcatagttgatcaa 37580820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 42 - 177
Target Start/End: Original strand, 36875527 - 36875660
Alignment:
Q  42 cctcactcccttctccgtgacatgatgacaatcttccaggtccagatgtagaagccgagggcaactctttgagatcgcatacaatgcgccatcatcaatt 141  Q
    ||||| |||||||||||||||||| | ||||| || ||||||||| || |||| |||||| ||| ||||  ||||| |||||| |||   |||||| |||    
T  36875527 cctcaatcccttctccgtgacatggtaacaatgtttcaggtccagttgcagaaaccgaggtcaaatctt--agatctcatacagtgcttgatcatcgatt 36875624  T
Q  142 cttgagtgtgacaagttcagcacctccagtttggaa 177  Q
    ||||||||||||||||||| ||||||||| ||||||    
T  36875625 cttgagtgtgacaagttcaccacctccagattggaa 36875660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 37582388 - 37582300
Alignment:
Q  24 gcagttgtctaacactagcctcactcccttctccgtgacatgatgacaatcttccaggtccagatgtagaagccgagggcaactctttg 112  Q
    |||||| |||| ||||||||||||||  ||||| ||| ||| |||||||| |||||||| ||||||||||||||||||| |||||||||    
T  37582388 gcagttttctaccactagcctcactcagttctctgtgccatcatgacaatgttccaggttcagatgtagaagccgagggaaactctttg 37582300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 255 - 447
Target Start/End: Complemental strand, 54346729 - 54346536
Alignment:
Q  255 tccaagcccaagtagaatccctacatcttagcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaa 354  Q
    ||||| ||||| || | |||| |||||| |||| |||| ||||||||| ||||||||||||| |  || |||||||| ||| |  |||||  ||||| ||    
T  54346729 tccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaa 54346630  T
Q  355 aaaggccaccacacccaacaat-atactcatatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaacctat 447  Q
    ||||||| ||||| ||| |||| |  | |||||| |||||||||  |||||||||||| |||||||| || ||| | || ||||||||||||||    
T  54346629 aaaggccgccacatccagcaataacccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctat 54346536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 289 - 448
Target Start/End: Original strand, 29760083 - 29760243
Alignment:
Q  289 gtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaaaaaggccaccacacccaacaat-atactcatatc 387  Q
    |||| ||||||||||||||||||||||| |||||||| ||||| |||||| ||| | |||||||||||||||||||||||   |||||  ||| || |||    
T  29760083 gtaaagcatcacaaactccaatcttcttagcataaccattgatccattttccgtttgtatcacaaaaaaggccaccacacttgacaatcctacccagatc 29760182  T
Q  388 tttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaacctatg 448  Q
    |||||||| |  |||| ||||||||||||||||  | ||| ||||||||||||||||||||    
T  29760183 tttgcaagaaccatcattattaagtttgatccattcttctcgcggtcgcttccaacctatg 29760243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 26 - 192
Target Start/End: Complemental strand, 18724524 - 18724354
Alignment:
Q  26 agttgtctaacactagcctcactcccttctccgtgacatgatgacaatcttccaggtccagatgtagaagccgagggcaactctttgagatcgcatacaa 125  Q
    |||| |||| |||||||||||  ||||| || ||||||| || ||||  ||||||||| || || | |||||||||| || ||||||||||||||||||     
T  18724524 agttttctaccactagcctcatccccttatcggtgacatcataacaacgttccaggtctagttgcaaaagccgagggaaaatctttgagatcgcatacag 18724425  T
Q  126 tgcgccatcatcaattcttgagtgtgacaagtt----cagcacctccagtttggaaacttcaaagttgatc 192  Q
    | |   |||||||||||||||||||||||||||    || |||||| ||||||||| ||||||||||||||    
T  18724424 tactttatcatcaattcttgagtgtgacaagttcaaccaacacctctagtttggaagcttcaaagttgatc 18724354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 447
Target Start/End: Original strand, 8019949 - 8020142
Alignment:
Q  255 tccaagcccaagtagaatccctacatcttagcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaa 354  Q
    ||||| ||||| || | |||| |||||| |||| |||| ||||||||| ||||||||||||| |  || |||||||| ||| |  |||||  ||||| ||    
T  8019949 tccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaa 8020048  T
Q  355 aaaggccaccacacccaacaat-atactcatatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaacctat 447  Q
    ||||||| ||||| |||||||| |  | |||||| |||||||||  |||||||||||| |||||||| || ||| | || ||||||||||||||    
T  8020049 aaaggccgccacatccaacaataacccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctat 8020142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 447
Target Start/End: Complemental strand, 48618906 - 48618735
Alignment:
Q  277 acatcttagcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaaaaaggccaccacacccaacaat 376  Q
    |||||| |||| |||| ||||||||| ||||||||||||| |  || |||||||| ||| |  | |||  ||||||||||||||| ||||| ||  ||||    
T  48618906 acatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccatctgaatcacaaaaaaggccgccacatccggcaat 48618807  T
Q  377 atactc-atatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaacctat 447  Q
    |  | | ||| | |||||||||  |||||||||||| |||||||| || ||||| || ||||||||||||||    
T  48618806 aacccccataaccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgcttccaacctat 48618735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 255 - 447
Target Start/End: Complemental strand, 1635992 - 1635799
Alignment:
Q  255 tccaagcccaagtagaatccctacatcttagcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaa 354  Q
    ||||| ||||| || | |||| |||||| |||| |||| ||||||||| ||||||||||||| |  || |||||||| |||||  |||||  ||||| ||    
T  1635992 tccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatttaccgtctgaatcacgaa 1635893  T
Q  355 aaaggccaccacacccaacaatatactc-atatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaacctat 447  Q
    ||||||| ||||| ||| |||||  | | ||||| |||||||||  |||||||||||| |||||||| || ||||| || ||||||||||||||    
T  1635892 aaaggccgccacatccagcaataacccctatatccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgcttccaacctat 1635799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 17636492 - 17636407
Alignment:
Q  103 caactctttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagtt 188  Q
    ||||||||||||||| ||||||||||  |||| |||| || ||  ||||||||||||| |||||||| ||||| ||||||||||||    
T  17636492 caactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaagtt 17636407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 447
Target Start/End: Original strand, 456600 - 456753
Alignment:
Q  295 catcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaaaaaggccaccacacccaacaat-atactcatatctttgca 393  Q
    |||||||||||||||||||||| |  || |||||||| ||| |  |||||  ||||| ||||||||| ||||| ||| |||| |  | |||||| |||||    
T  456600 catcacaaactccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaggccgccacatccagcaataacccccatatccttgca 456699  T
Q  394 agcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaacctat 447  Q
    ||||  ||||||||||||  ||||||| || ||| | || ||||||||||||||    
T  456700 agcaccatcactattaagcctgatccaaccctctcgaggccgcttccaacctat 456753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 18315364 - 18315279
Alignment:
Q  103 caactctttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagtt 188  Q
    ||||||||||||||| |||| | |||  ||||||||| | |||  ||||||||||||| |||||||||||||| ||||| ||||||    
T  18315364 caactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagtt 18315279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 447
Target Start/End: Original strand, 26616953 - 26617122
Alignment:
Q  279 atcttagcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaaaaaggccaccacacccaacaatat 378  Q
    |||| |||| |||| ||||||||| ||||||||||||| |  || |||||||| ||| |  |||||  ||||| ||||||||| |||||   | |||||     
T  26616953 atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaggccgccacatgaagcaataa 26617052  T
Q  379 ac-tcatatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaacctat 447  Q
     | ||||||| |||||||||  |||||||||||| |||||||| || ||| | || ||||||||||||||    
T  26617053 ccctcatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctat 26617122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 21235613 - 21235651
Alignment:
Q  150 tgacaagttcagcacctccagtttggaaacttcaaagtt 188  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  21235613 tgacaagttcaacacctccagtttgggaacttcaaagtt 21235651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 255 - 447
Target Start/End: Complemental strand, 13186882 - 13186689
Alignment:
Q  255 tccaagcccaagtagaatccctacatcttagcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaa 354  Q
    ||||| ||||| || | |||| |||||| |||| |||| ||||||||| ||||||||||||| |  || |||||||| ||| |  |||||| ||||| ||    
T  13186882 tccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctaaatcacgaa 13186783  T
Q  355 aaaggccaccacacccaacaat-atactcatatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaacctat 447  Q
    ||||||| ||||| ||| |||| |  | |||||| |||||||||  |||||||||||| |||||| | || ||| | || ||||||||||||||    
T  13186782 aaaggccgccacatccagcaataacccccatatccttgcaagcaccatcactattaagcttgatcaaaccttctcgaggccgcttccaacctat 13186689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 277 - 443
Target Start/End: Original strand, 7305309 - 7305476
Alignment:
Q  277 acatcttagcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaaaaaggccaccacacccaacaat 376  Q
    |||||| |||| |||| ||||||||| |||||||||| || |  ||  ||||||| ||| |  |||||  ||||  ||||||||||||||| ||| ||||    
T  7305309 acatctcagcatgtaaggcatcacaagctccaatctttttagtgtagtctttgatccatctaccgtctgaatcatgaaaaaggccaccacatccagcaat 7305408  T
Q  377 atactc--atatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaac 443  Q
    | ||||  ||||| |||||||||  |||||||||||| |||||||| || ||||| || |||| |||||    
T  7305409 a-actcccatatccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgctaccaac 7305476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 188
Target Start/End: Complemental strand, 32785856 - 32785778
Alignment:
Q  110 ttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagtt 188  Q
    |||||||| |||| | |||  |||||||||||||||  ||||||||||||| |||||| ||||||| | ||| ||||||    
T  32785856 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagtt 32785778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 255 - 447
Target Start/End: Complemental strand, 23949692 - 23949499
Alignment:
Q  255 tccaagcccaagtagaatccctacatcttagcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaa 354  Q
    ||||| ||||| || | |||| |||||| |||| |||| ||||||||| ||||||||||||| |  || |||||||| ||| |  |||||  ||||| ||    
T  23949692 tccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaa 23949593  T
Q  355 aaaggccaccacacccaacaat-atactcatatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaacctat 447  Q
    ||||||| ||||| ||| |||| |  | |||||| |||||||||  |||||||||||| |||||||| || ||| | || ||||||||||||||    
T  23949592 aaaggccgccacatccagcaataacccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctat 23949499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 447
Target Start/End: Original strand, 23085137 - 23085309
Alignment:
Q  277 acatcttagcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaaaaaggccaccacacccaacaat 376  Q
    |||||| |||| |||| ||||||||| ||||||||||||| |  || |||||||| ||| |  |||||  ||||| ||||||||| || || ||| ||||    
T  23085137 acatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaggccgcctcatccagcaat 23085236  T
Q  377 atactc--atatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaacctat 447  Q
    |  | |  ||||| |||||||||  |||||||||||| |||||||| || ||||| || ||||||||||||||    
T  23085237 aaccccccatatccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgcttccaacctat 23085309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 188
Target Start/End: Original strand, 52082589 - 52082674
Alignment:
Q  103 caactctttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagtt 188  Q
    ||||||||||||||| |||||||||   ||||||||||| |||  | ||||||||||| |||||||| ||||||||||| ||||||    
T  52082589 caactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagtt 52082674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 52092786 - 52092870
Alignment:
Q  104 aactctttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagtt 188  Q
    |||||||||||||| ||||||||| | ||||||||||| |||  | || |||||||| |||||||| ||||||||||| ||||||    
T  52092786 aactctttgagatcacatacaatgtgtcatcatcaatttttgtctttgccaagttcaacacctccaatttggaaacttgaaagtt 52092870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 447
Target Start/End: Complemental strand, 5308636 - 5308443
Alignment:
Q  255 tccaagcccaagtagaatccctacatcttagcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaa 354  Q
    ||||| ||||| || | |||| |||||| |||| |||| ||||||||| ||||||||||||| |  || |||||||| ||| |  ||| |  ||||| ||    
T  5308636 tccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtttgaatcacgaa 5308537  T
Q  355 aaaggccaccacacccaacaatatactc-atatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaacctat 447  Q
    ||||||  ||||| ||| |||||  | | ||||| |||||||||  |||||||||||| |||||||| || ||| | || ||||||||||||||    
T  5308536 aaaggcagccacatccagcaataacccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctat 5308443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 447
Target Start/End: Original strand, 50952794 - 50952966
Alignment:
Q  277 acatcttagcaagtaatgcatcacaaactccaatcttctttgcataa-cctttgattcatttttcgtctatatcacaaaaaaggccaccacacccaacaa 375  Q
    |||||| |||| |||| ||||||||| ||||||||||||| |  ||| ||||||||  || |  |||||  ||||| ||||||||| ||||| ||| |||    
T  50952794 acatctcagcatgtaaggcatcacaagctccaatcttcttagtgtaagcctttgatctatctaccgtctgaatcacgaaaaaggccgccacatccagcaa 50952893  T
Q  376 tatactc-atatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaacctat 447  Q
    ||  | | ||||| |||||||||  |||||||||||| |||||||| || ||| | || ||||||||||||||    
T  50952894 taacccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctat 50952966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 277 - 447
Target Start/End: Original strand, 34390032 - 34390203
Alignment:
Q  277 acatcttagcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaaaaaggccaccacacccaacaat 376  Q
    |||||| |||| |||| ||||||||| ||||||||||||| | ||| |||||||| ||| |  ||| |  ||||| ||||||||| ||||| ||| ||||    
T  34390032 acatctcagcatgtaaggcatcacaagctccaatcttcttagtatagcctttgatccatctaccgtttgaatcacgaaaaaggccgccacatccagcaat 34390131  T
Q  377 atactc-atatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaacctat 447  Q
    |  | | ||||| |||||||||  |||||||||||| |||||||| || ||| | || ||||||||||||||    
T  34390132 aacccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctat 34390203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 8187153 - 8187097
Alignment:
Q  132 atcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagtt 188  Q
    |||||||| |||||  ||||||||||||| ||||||||||||||||| |||||||||    
T  8187153 atcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagtt 8187097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 1548487 - 1548430
Alignment:
Q  131 catcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagtt 188  Q
    |||||||||| ||||  ||||||||||||| |||||||||||||| || |||||||||    
T  1548487 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagtt 1548430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 8184121 - 8184036
Alignment:
Q  103 caactctttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagtt 188  Q
    |||||||||||||| ||||| | |||   |||||||| |||||  ||||||||||||| |||||| ||||| | ||||||||||||    
T  8184121 caactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagtt 8184036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 1519188 - 1519148
Alignment:
Q  148 tgtgacaagttcagcacctccagtttggaaacttcaaagtt 188  Q
    ||||||||||||| |||||| ||||||| ||||||||||||    
T  1519188 tgtgacaagttcaacacctctagtttgggaacttcaaagtt 1519148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 447
Target Start/End: Original strand, 34080972 - 34081136
Alignment:
Q  284 agcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaaaaaggccaccacacccaacaatatactc- 382  Q
    |||| |||| ||||||||| ||||||||||||| |  || |||||||| ||| |  |||||  ||||| |||||| || ||||| ||| |||||  | |     
T  34080972 agcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagaccgccacatccagcaataaccccc 34081071  T
Q  383 atatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaacctat 447  Q
    ||||| |||||||||  |||||||||||| |||||||| || ||| | || ||||||||||||||    
T  34081072 atatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctat 34081136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 447
Target Start/End: Original strand, 18259366 - 18259536
Alignment:
Q  277 acatcttagcaagtaatgcatcacaaactccaatcttctttgcataacctttgattcatttttcgtctatatcacaaaaaaggccaccacacccaacaat 376  Q
    |||||| |||| |||| ||||||||| ||||||||||||| |  ||  ||||||| ||| |  |||||  ||||| ||||||||| ||||| | ||||||    
T  18259366 acatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagtctttgatccatctaccgtctgaatcacgaaaaaggccgccacatc-aacaat 18259464  T
Q  377 atactc-atatctttgcaagcaaaatcactattaagtttgatccacccatcttgcggtcgcttccaacctat 447  Q
    |  | | ||||| |||||||||  |||||||||||| |||||||| || ||| | || ||||||||||||||    
T  18259465 aacccccatatccttgcaagcactatcactattaagcttgatccaaccttctcgaggccgcttccaacctat 18259536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 41901626 - 41901542
Alignment:
Q  103 caactctttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagt 187  Q
    |||||||||||||||  ||| | |||  ||||||||| | |||  | ||||||||||| |||||||||||||| |||||||||||    
T  41901626 caactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 188
Target Start/End: Original strand, 32267483 - 32267568
Alignment:
Q  103 caactctttgagatcgcatacaatgcgccatcatcaattcttgagtgtgacaagttcagcacctccagtttggaaacttcaaagtt 188  Q
    |||||||||||||||  ||| | |||  ||||||||| | |||  |||||||||||||  ||||||| ||||| ||||||||||||    
T  32267483 caactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagtt 32267568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 12102319 - 12102359
Alignment:
Q  148 tgtgacaagttcagcacctccagtttggaaacttcaaagtt 188  Q
    ||||||||||||| |||||||||||||| ||||||||||||    
T  12102319 tgtgacaagttcaacacctccagtttgggaacttcaaagtt 12102359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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