View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18121_high_10 (Length: 320)
Name: NF18121_high_10
Description: NF18121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18121_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 1320786 - 1320485
Alignment:
| Q |
1 |
acaaaatgagttgatatcactatgggagctcaaaagtggtcaaaaatttcataaagtttttattccagaggaagatattgtcaagctatcacaaagtaag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1320786 |
acaaaatgagttgatatcactatgggagctcaaaagtggtcaaaaatttcataaagtttttgttccagaggaagatattgtcaagctatcacaaagtaat |
1320687 |
T |
|
| Q |
101 |
actttaatttgtttttactaatgatgtgtaaatataatacatatacaagcttacattgataatatatgtttatgatgcagctttaccccctccagaagat |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1320686 |
actttaatttgtttttactaatgttgtgtaaatataatacatatacaagcttacattggtaatatatgtttatgatgcagctttaccccctccagaagat |
1320587 |
T |
|
| Q |
201 |
attccaatttccatcattcatagcatatttgttagaggtgacatggcaaactttgagctagaggaagatgatcttgaaggttcacaactataccctggtt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1320586 |
attccaatttccatcattcatagcatatttgttagaggtgacatggcaaactttgagctagaggaagatgatcttgaagcttcacaactataccctggtt |
1320487 |
T |
|
| Q |
301 |
ac |
302 |
Q |
| |
|
|| |
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|
| T |
1320486 |
ac |
1320485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 169 - 292
Target Start/End: Complemental strand, 1336127 - 1336007
Alignment:
| Q |
169 |
tttatgatgcagctttaccccctccagaagatattccaatttccatcattcatagcatatttgttagaggtgacatggcaaactttgagctagaggaaga |
268 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||| ||||||||||||||||| | |
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| T |
1336127 |
tttatgatgcagctttaccccctccagaagatattccaatttccatcgttcatagcatatttgttaaaggcgacatg---tactttgagctagaggaaaa |
1336031 |
T |
|
| Q |
269 |
tgatcttgaaggttcacaactata |
292 |
Q |
| |
|
||| ||||||| |||||||||||| |
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|
| T |
1336030 |
tgaccttgaagcttcacaactata |
1336007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 1336548 - 1336444
Alignment:
| Q |
1 |
acaaaatgagttgatatcactatgggagctcaaaagtggtcaaaaatttcataaagtttttattccagaggaagatattgtcaagctatcacaaagtaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||||| ||| ||||||| ||||||||| |||||||||||||||||||| |
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| T |
1336548 |
acaaaatgagttgatatcactatgggaactcaaaagtggtcaaaactttaacaaagtatttgttccagaagaagatattatcaagctatcacaaagtaag |
1336449 |
T |
|
| Q |
101 |
acttt |
105 |
Q |
| |
|
||||| |
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|
| T |
1336448 |
acttt |
1336444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 1264116 - 1264218
Alignment:
| Q |
1 |
acaaaatgagttgatatcactatgggagctcaaaagtggtcaaaaatttcataaagtttttattccagaggaagatattgtcaagctatcacaaagtaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||| || | ||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
1264116 |
acaaaatgagttgatatcactatgggagcttaaaaatggtcaaatccttaacaaagtttttgctccagaagaagatattgtcaagctatcacaaagtaag |
1264215 |
T |
|
| Q |
101 |
act |
103 |
Q |
| |
|
||| |
|
|
| T |
1264216 |
act |
1264218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 292
Target Start/End: Original strand, 1264310 - 1264427
Alignment:
| Q |
175 |
atgcagctttaccccctccagaagatattccaatttccatcattcatagcatatttgttagaggtgacatggcaaactttgagctagaggaagatgatct |
274 |
Q |
| |
|
|||||| ||||||||||||| | |||| ||| ||||||| ||||||| |||||||| ||| ||| | | ||||||||||||||||||||||| || |
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|
| T |
1264310 |
atgcagttttaccccctccacacaatataccagtttccattcttcatagtgtatttgttcaaggggaccttgtgaactttgagctagaggaagatgacct |
1264409 |
T |
|
| Q |
275 |
tgaaggttcacaactata |
292 |
Q |
| |
|
||||| |||||||||||| |
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|
| T |
1264410 |
tgaagcttcacaactata |
1264427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1253533 - 1253575
Alignment:
| Q |
1 |
acaaaatgagttgatatcactatgggagctcaaaagtggtcaa |
43 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| ||||||| |
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|
| T |
1253533 |
acaaaatgagttgatataactatgggagcttaaaaatggtcaa |
1253575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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