View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18121_high_16 (Length: 248)

Name: NF18121_high_16
Description: NF18121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18121_high_16
NF18121_high_16
[»] chr4 (4 HSPs)
chr4 (1-229)||(23062259-23062487)
chr4 (1-218)||(32880670-32880874)
chr4 (75-160)||(43992238-43992323)
chr4 (78-172)||(19318834-19318928)
[»] chr2 (1 HSPs)
chr2 (1-229)||(28592866-28593093)
[»] chr6 (2 HSPs)
chr6 (1-229)||(25907261-25907489)
chr6 (51-154)||(21695849-21695952)
[»] chr8 (2 HSPs)
chr8 (1-229)||(21279261-21279489)
chr8 (47-156)||(28164880-28164989)
[»] chr5 (3 HSPs)
chr5 (1-88)||(30302015-30302101)
chr5 (72-118)||(14779531-14779577)
chr5 (78-154)||(20584724-20584800)
[»] chr7 (4 HSPs)
chr7 (22-172)||(9817132-9817282)
chr7 (22-172)||(10719057-10719207)
chr7 (45-91)||(20483935-20483981)
chr7 (72-160)||(21115432-21115520)
[»] chr1 (2 HSPs)
chr1 (22-172)||(15229641-15229790)
chr1 (40-169)||(10505307-10505436)
[»] scaffold0985 (1 HSPs)
scaffold0985 (54-156)||(438-540)
[»] scaffold0114 (1 HSPs)
scaffold0114 (47-156)||(26706-26815)
[»] chr3 (1 HSPs)
chr3 (48-154)||(34932178-34932284)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 23062259 - 23062487
Alignment:
1 catcatcaattcgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtc 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23062259 catcagcaattcgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtc 23062358  T
101 accatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaacta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23062359 accatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaacta 23062458  T
201 ggatcagccgcagcccctttactccgaca 229  Q
    ||||||||||||||||||| |||| ||||    
23062459 ggatcagccgcagccccttgactctgaca 23062487  T

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Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 32880874 - 32880670
Alignment:
1 catcatcaattcgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtc 100  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
32880874 catcagcaattcgtaccccttcattattatccaaaacattaatgcggtttaccttctttcttgacgtggttgaagcatgaaaatatttggtattcaagtc 32880775  T
101 accatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaacta 200  Q
    ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||             |||||||||||||||||||||||    
32880774 accatcatgataccagtgtgtctttgctcgctgtcacccatacttatcctcttgaatcatcaaa-------------tgcgcaagtttgtcaacaaacta 32880688  T
201 ggatcagccgcagcccct 218  Q
    |||| |||||||||||||    
32880687 ggataagccgcagcccct 32880670  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 43992238 - 43992323
Alignment:
75 gcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcat 160  Q
    ||||||||||| || ||||| || ||||||||||||||||| || || |||||||  |||| ||||||||||||||||||||||||    
43992238 gcatgaaaaaaatttgtatttaaatcaccatcacgataccaatgagtttttgctctttgtctccaatacttatcctcttgaatcat 43992323  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 19318834 - 19318928
Alignment:
78 tgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcat 172  Q
    ||||||||||| || || |  ||||||||||| ||||||||  | ||||| || ||||||||||| ||||||||||| |||||||| || |||||    
19318834 tgaaaaaatttcgtgtttagatcaccatcacggtaccagtgaatttttgcacgttgtcgccaatatttatcctcttgtatcatcaactgagtcat 19318928  T

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Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 28592866 - 28593093
Alignment:
1 catcatcaattcgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtc 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
28592866 catcagcaattcgtaccccttcatcattatccaaaaaattaatgcggtttatcttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtc 28592965  T
101 accatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaacta 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
28592966 accatcacgataccagtgtgtctttgctcgttgtcgccaatacttatcctcttgaat-atcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaacta 28593064  T
201 ggatcagccgcagcccctttactccgaca 229  Q
    ||||||||||||||||||| |||||||||    
28593065 ggatcagccgcagccccttgactccgaca 28593093  T

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Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 25907261 - 25907489
Alignment:
1 catcatcaattcgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtc 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
25907261 catcagcaattcgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacatggctgaagcatgaagaaatttggtattcaagtc 25907360  T
101 accatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaacta 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
25907361 accatcacgatacaagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaacta 25907460  T
201 ggatcagccgcagcccctttactccgaca 229  Q
    |||||||||||| |||||  |||||||||    
25907461 ggatcagccgcaacccctcgactccgaca 25907489  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 21695952 - 21695849
Alignment:
51 accttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcct 150  Q
    |||||||||||||| || ||||  |||||||| ||| | |||||||| || ||||||||||||||||| || || ||||  |||| ||| ||| ||||||    
21695952 accttctttcttgaagttgctgccgcatgaaagaatctcgtattcaaatctccatcacgataccagtgagttttggctctttgtcaccagtacatatcct 21695853  T
151 cttg 154  Q
    ||||    
21695852 cttg 21695849  T

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Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 21279261 - 21279489
Alignment:
1 catcatcaattcgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtc 100  Q
    ||||| ||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||||| |||||||| ||||||||   ||| ||||||| |||    
21279261 catcagcaactcgtacccgttcatcattatccagaaaattaatgtggtttaccttctttcttgatgtggctgatgcatgaaatttttttgtattcacgtc 21279360  T
101 accatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaacta 200  Q
    ||||||||||||||| |||||||| ||||| || |||||||| ||||| |||||||||||||| || ||||||||||| |||||||||||||| ||||||    
21279361 accatcacgataccaatgtgtcttagctcgttgccgccaatagttatcttcttgaatcatcaattgcgtcatgcgtttccgcaagtttgtcaaaaaacta 21279460  T
201 ggatcagccgcagcccctttactccgaca 229  Q
    |||||| |||||||||||| |||||||||    
21279461 ggatcaaccgcagccccttgactccgaca 21279489  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 28164880 - 28164989
Alignment:
47 gtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatactta 146  Q
    |||||| |||||||| || || || |||||||| || | |||||| || | ||| |||||||||||||||||||| || |||| ||||| ||||||| ||    
28164880 gtttactttctttctggaggttgcggaagcatggaagattttggtgtttaggtctccatcacgataccagtgtgttttagctctctgtctccaatacata 28164979  T
147 tcctcttgaa 156  Q
    ||||||||||    
28164980 tcctcttgaa 28164989  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 30302101 - 30302015
Alignment:
1 catcatcaattcgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaattt 88  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
30302101 catcagcaattcgtaccccttcatcattatccaaaaaattaatgcggtttacc-tctttcttgacgtggctgaagcatgaaaaaattt 30302015  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 14779577 - 14779531
Alignment:
72 gaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtg 118  Q
    ||||||| |||||| ||||| |||||||| |||||||||||||||||    
14779577 gaagcataaaaaaaattggtgttcaagtccccatcacgataccagtg 14779531  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 20584800 - 20584724
Alignment:
78 tgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttg 154  Q
    ||||| ||||| || |||||||  ||||| ||||||||||| || || ||||  |||||||||||| ||||||||||    
20584800 tgaaagaatttcgtgttcaagtatccatcgcgataccagtgagttttggctctttgtcgccaatacatatcctcttg 20584724  T

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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 9817132 - 9817282
Alignment:
22 catcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgt 121  Q
    ||||||| |||||||||||||| ||||||||||| ||||| |||||||||| ||||||||||  ||| || || | ||||||||||||||||||||| ||    
9817132 catcattttccaaaaaattaatacggtttaccttttttctagacgtggctgcagcatgaaaatttttagtgttaaggtcaccatcacgataccagtgagt 9817231  T
122 ctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcat 172  Q
    ||| ||||| || |  |||||||| |||| || ||||||||| ||||||||    
9817232 cttagctcgatgccatcaatacttgtcctatttaatcatcaagtgtgtcat 9817282  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 10719057 - 10719207
Alignment:
22 catcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgt 121  Q
    ||||||| |||||||||||||| ||||||||||| ||||| |||||||||| ||||||||||  ||| || || | ||||||||||||||||||||| ||    
10719057 catcattttccaaaaaattaatacggtttaccttttttctagacgtggctgcagcatgaaaatttttagtgttaaggtcaccatcacgataccagtgagt 10719156  T
122 ctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcat 172  Q
    ||| ||||| || |  |||||||| |||| || ||||||||| ||||||||    
10719157 cttagctcgatgccatcaatacttgtcctatttaatcatcaagtgtgtcat 10719207  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 20483981 - 20483935
Alignment:
45 cggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggt 91  Q
    ||||||||||| |||||  ||||||| ||||||||||||||||||||    
20483981 cggtttaccttttttctaaacgtggcagaagcatgaaaaaatttggt 20483935  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 21115520 - 21115432
Alignment:
72 gaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcat 160  Q
    |||||||||||||| || || || |  ||||||||||||||||| || || || || ||||| |||||||| ||||| ||||| |||||    
21115520 gaagcatgaaaaaacttcgtgtttagatcaccatcacgataccaatgagttttcgcacgctgacgccaatatttatcttcttgtatcat 21115432  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 15229790 - 15229641
Alignment:
22 catcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgt 121  Q
    ||||||| |||||||||||||| ||||||||||| ||||  || ||||||||||||| ||    ||| ||||| | |||||||| ||| ||||| || ||    
15229790 catcattttccaaaaaattaatacggtttaccttttttcaagatgtggctgaagcatcaatttttttagtattaaggtcaccat-acggtaccaatgagt 15229692  T
122 ctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcat 172  Q
    ||| || ||||| ||||||||||||||||||||||| ||||| || |||||    
15229691 cttagcacgctgccgccaatacttatcctcttgaataatcaagtgcgtcat 15229641  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 10505307 - 10505436
Alignment:
40 taatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgcca 139  Q
    ||||| |||||||||||||| | || ||||  || |||||||||||||| |||||||  || ||| |||||||||| ||  |||| ||||| || | |||    
10505307 taatgtggtttaccttctttttagatgtggtagaggcatgaaaaaatttagtattcatatcgccaacacgataccaatggatcttggctcgttgcctcca 10505406  T
140 atacttatcctcttgaatcatcaaatgtgt 169  Q
    ||| ||||| ||||||||||||| ||||||    
10505407 atatttatcttcttgaatcatcagatgtgt 10505436  T

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Target: scaffold0985 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0985
Description:

Target: scaffold0985; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 438 - 540
Alignment:
54 ttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctctt 153  Q
    |||||||| || || || ||||||||||| ||||||||||| | ||| |||||||| |||||||||||||| |||| ||| | ||||||| | || ||||    
438 ttctttctggaggttgcggaagcatgaaagaatttggtattaaggtctccatcacggtaccagtgtgtcttagctctctgcctccaatacatgtcttctt 537  T
154 gaa 156  Q
    |||    
538 gaa 540  T

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Target: scaffold0114 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 26706 - 26815
Alignment:
47 gtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatactta 146  Q
    |||||| |||||||  || || || ||||| || || ||||||||||| | ||| |||||||||||||||||||| || |||| ||| | ||||||| ||    
26706 gtttactttctttcaggaggttgcggaagcgtggaagaatttggtatttaggtctccatcacgataccagtgtgttttagctctctgcctccaatacata 26805  T
147 tcctcttgaa 156  Q
    || |||||||    
26806 tcttcttgaa 26815  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 34932284 - 34932178
Alignment:
48 tttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttat 147  Q
    ||||| |||||||| || || || || ||||| || ||||| || |||| ||| |||||||||||| |||| || || |||| ||||| ||||||| |||    
34932284 tttactttctttctggaggttgcggacgcatggaagaattttgtgttcaggtctccatcacgatacaagtgcgttttagctctctgtctccaatacatat 34932185  T
148 cctcttg 154  Q
    |||||||    
34932184 cctcttg 34932178  T

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