View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18121_high_19 (Length: 236)

Name: NF18121_high_19
Description: NF18121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18121_high_19
NF18121_high_19
[»] chr2 (5 HSPs)
chr2 (1-214)||(13558768-13558984)
chr2 (4-40)||(18570985-18571021)
chr2 (4-40)||(18622428-18622464)
chr2 (7-39)||(43586018-43586050)
chr2 (8-40)||(44046605-44046637)
[»] scaffold0571 (1 HSPs)
scaffold0571 (6-40)||(7703-7737)
[»] chr7 (7 HSPs)
chr7 (4-40)||(44172900-44172936)
chr7 (4-39)||(2143863-2143898)
chr7 (4-40)||(650532-650568)
chr7 (7-39)||(2144552-2144584)
chr7 (7-39)||(5937434-5937466)
chr7 (4-40)||(37775995-37776031)
chr7 (4-40)||(38134416-38134452)
[»] chr6 (5 HSPs)
chr6 (4-40)||(10157997-10158033)
chr6 (7-39)||(6751895-6751927)
chr6 (4-40)||(9024186-9024222)
chr6 (7-39)||(10031584-10031616)
chr6 (7-39)||(19369831-19369863)
[»] chr4 (7 HSPs)
chr4 (96-160)||(17941309-17941368)
chr4 (4-41)||(9988709-9988746)
chr4 (7-40)||(43188625-43188658)
chr4 (4-40)||(683065-683101)
chr4 (7-39)||(13307891-13307923)
chr4 (4-40)||(18513251-18513287)
chr4 (7-39)||(37496718-37496750)
[»] chr3 (2 HSPs)
chr3 (4-40)||(9210835-9210871)
chr3 (4-36)||(34409352-34409384)
[»] chr5 (4 HSPs)
chr5 (130-160)||(33824442-33824472)
chr5 (4-37)||(10009842-10009875)
chr5 (4-40)||(19737492-19737528)
chr5 (7-39)||(30080514-30080546)
[»] chr1 (2 HSPs)
chr1 (6-40)||(14332421-14332455)
chr1 (4-41)||(26307082-26307119)
[»] chr8 (3 HSPs)
chr8 (4-41)||(31548303-31548340)
chr8 (7-39)||(31119101-31119133)
chr8 (7-39)||(42874536-42874568)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 13558768 - 13558984
Alignment:
Q  1 aagacatgtgattgcattgaattatgtcattttctcaaatatcgattaattaaccacgaaatagtgattga---accaaaccaggcataattcatcgaca 97  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  13558768 aagacatgtgattgcattaaattatgtcattttctcaaatatcgattaattaaccacgaaatagtgattgactaaccaaaccaggcataattcatcgaca 13558867  T
Q  98 ttcacatcacaaaacaacaaatcaatgtctaaatttggcttatcataattcataaacaattctgaaacaagtttggcttatcaaaacacatatgtacaaa 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13558868 ttcacatcacaaaacaacaaatcaatgtctaaatttggcttatcataattcataaacaattctgaaacaagtttggcttatcaaaacacatatgtacaaa 13558967  T
Q  198 gcaattttcctattccc 214  Q
    |||||||||||||||||    
T  13558968 gcaattttcctattccc 13558984  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 18571021 - 18570985
Alignment:
Q  4 acatgtgattgcattgaattatgtcattttctcaaat 40  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  18571021 acatatgattacattgaattatgtcattttctcaaat 18570985  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 18622464 - 18622428
Alignment:
Q  4 acatgtgattgcattgaattatgtcattttctcaaat 40  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  18622464 acatgtgattgcatttaattatgtcattttcttaaat 18622428  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 43586018 - 43586050
Alignment:
Q  7 tgtgattgcattgaattatgtcattttctcaaa 39  Q
    ||||||| |||||||||||||||||||||||||    
T  43586018 tgtgattacattgaattatgtcattttctcaaa 43586050  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 44046637 - 44046605
Alignment:
Q  8 gtgattgcattgaattatgtcattttctcaaat 40  Q
    ||||||||||| |||||||||||||||||||||    
T  44046637 gtgattgcattcaattatgtcattttctcaaat 44046605  T

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Target: scaffold0571 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 7737 - 7703
Alignment:
Q  6 atgtgattgcattgaattatgtcattttctcaaat 40  Q
    |||||||||||||||||||||||||||||||||||    
T  7737 atgtgattgcattgaattatgtcattttctcaaat 7703  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 44172900 - 44172936
Alignment:
Q  4 acatgtgattgcattgaattatgtcattttctcaaat 40  Q
    |||||||||| ||||||||||||||||||||||||||    
T  44172900 acatgtgattacattgaattatgtcattttctcaaat 44172936  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 2143863 - 2143898
Alignment:
Q  4 acatgtgattgcattgaattatgtcattttctcaaa 39  Q
    |||||||||| |||||||||||||||||||||||||    
T  2143863 acatgtgattacattgaattatgtcattttctcaaa 2143898  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 650568 - 650532
Alignment:
Q  4 acatgtgattgcattgaattatgtcattttctcaaat 40  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  650568 acatgtgattgcattcaattatgtcattttcttaaat 650532  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 2144552 - 2144584
Alignment:
Q  7 tgtgattgcattgaattatgtcattttctcaaa 39  Q
    ||||||| |||||||||||||||||||||||||    
T  2144552 tgtgattacattgaattatgtcattttctcaaa 2144584  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 5937434 - 5937466
Alignment:
Q  7 tgtgattgcattgaattatgtcattttctcaaa 39  Q
    ||||||| |||||||||||||||||||||||||    
T  5937434 tgtgattacattgaattatgtcattttctcaaa 5937466  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 37776031 - 37775995
Alignment:
Q  4 acatgtgattgcattgaattatgtcattttctcaaat 40  Q
    |||||||||| |||| |||||||||||||||||||||    
T  37776031 acatgtgattacatttaattatgtcattttctcaaat 37775995  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 38134416 - 38134452
Alignment:
Q  4 acatgtgattgcattgaattatgtcattttctcaaat 40  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  38134416 acatatgattacattgaattatgtcattttctcaaat 38134452  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 10158033 - 10157997
Alignment:
Q  4 acatgtgattgcattgaattatgtcattttctcaaat 40  Q
    |||||||||| ||||||||||||||||||||||||||    
T  10158033 acatgtgattacattgaattatgtcattttctcaaat 10157997  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 6751895 - 6751927
Alignment:
Q  7 tgtgattgcattgaattatgtcattttctcaaa 39  Q
    ||||||| |||||||||||||||||||||||||    
T  6751895 tgtgattacattgaattatgtcattttctcaaa 6751927  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 9024186 - 9024222
Alignment:
Q  4 acatgtgattgcattgaattatgtcattttctcaaat 40  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  9024186 acatatgattacattgaattatgtcattttctcaaat 9024222  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 10031616 - 10031584
Alignment:
Q  7 tgtgattgcattgaattatgtcattttctcaaa 39  Q
    ||||||| |||||||||||||||||||||||||    
T  10031616 tgtgattacattgaattatgtcattttctcaaa 10031584  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 19369863 - 19369831
Alignment:
Q  7 tgtgattgcattgaattatgtcattttctcaaa 39  Q
    ||||||| |||||||||||||||||||||||||    
T  19369863 tgtgattacattgaattatgtcattttctcaaa 19369831  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 17941309 - 17941368
Alignment:
Q  96 cattcacatcacaaaacaacaaatcaatgtctaaatttggcttatcataattcataaacaattct 160  Q
    ||||||||||||||||||||||     |||| |||||||  ||||||||||||||||||||||||    
T  17941309 cattcacatcacaaaacaacaa-----tgtccaaatttgatttatcataattcataaacaattct 17941368  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 9988709 - 9988746
Alignment:
Q  4 acatgtgattgcattgaattatgtcattttctcaaata 41  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  9988709 acatgtgattacattcaattatgtcattttctcaaata 9988746  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 43188658 - 43188625
Alignment:
Q  7 tgtgattgcattgaattatgtcattttctcaaat 40  Q
    |||||| |||||||||||||||||||||||||||    
T  43188658 tgtgatcgcattgaattatgtcattttctcaaat 43188625  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 683101 - 683065
Alignment:
Q  4 acatgtgattgcattgaattatgtcattttctcaaat 40  Q
    |||||||||| |||| |||||||||||||||||||||    
T  683101 acatgtgattacattcaattatgtcattttctcaaat 683065  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 13307923 - 13307891
Alignment:
Q  7 tgtgattgcattgaattatgtcattttctcaaa 39  Q
    ||||||| |||||||||||||||||||||||||    
T  13307923 tgtgattacattgaattatgtcattttctcaaa 13307891  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 18513251 - 18513287
Alignment:
Q  4 acatgtgattgcattgaattatgtcattttctcaaat 40  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  18513251 acatatgattacattgaattatgtcattttctcaaat 18513287  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 37496750 - 37496718
Alignment:
Q  7 tgtgattgcattgaattatgtcattttctcaaa 39  Q
    ||||||| |||||||||||||||||||||||||    
T  37496750 tgtgattacattgaattatgtcattttctcaaa 37496718  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 9210835 - 9210871
Alignment:
Q  4 acatgtgattgcattgaattatgtcattttctcaaat 40  Q
    |||||||||| ||||||||||||||||||||||||||    
T  9210835 acatgtgattccattgaattatgtcattttctcaaat 9210871  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 34409352 - 34409384
Alignment:
Q  4 acatgtgattgcattgaattatgtcattttctc 36  Q
    |||||||||| ||||||||||||||||||||||    
T  34409352 acatgtgattacattgaattatgtcattttctc 34409384  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 160
Target Start/End: Complemental strand, 33824472 - 33824442
Alignment:
Q  130 atttggcttatcataattcataaacaattct 160  Q
    |||||||||||||||||||||||||||||||    
T  33824472 atttggcttatcataattcataaacaattct 33824442  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 10009875 - 10009842
Alignment:
Q  4 acatgtgattgcattgaattatgtcattttctca 37  Q
    |||||||||| |||||||||||||||||||||||    
T  10009875 acatgtgattacattgaattatgtcattttctca 10009842  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 19737492 - 19737528
Alignment:
Q  4 acatgtgattgcattgaattatgtcattttctcaaat 40  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  19737492 acatatgattgcattgaattatgtaattttctcaaat 19737528  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 30080514 - 30080546
Alignment:
Q  7 tgtgattgcattgaattatgtcattttctcaaa 39  Q
    ||||||| |||||||||||||||||||||||||    
T  30080514 tgtgattacattgaattatgtcattttctcaaa 30080546  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 14332455 - 14332421
Alignment:
Q  6 atgtgattgcattgaattatgtcattttctcaaat 40  Q
    |||||||| ||||||||||||||||||||||||||    
T  14332455 atgtgattacattgaattatgtcattttctcaaat 14332421  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 26307082 - 26307119
Alignment:
Q  4 acatgtgattgcattgaattatgtcattttctcaaata 41  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  26307082 acatgtgatttcattcaattatgtcattttctcaaata 26307119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 31548303 - 31548340
Alignment:
Q  4 acatgtgattgcattgaattatgtcattttctcaaata 41  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  31548303 acatgtgattacattgaattatgtcattttatcaaata 31548340  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 31119133 - 31119101
Alignment:
Q  7 tgtgattgcattgaattatgtcattttctcaaa 39  Q
    ||||||| |||||||||||||||||||||||||    
T  31119133 tgtgattacattgaattatgtcattttctcaaa 31119101  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 42874568 - 42874536
Alignment:
Q  7 tgtgattgcattgaattatgtcattttctcaaa 39  Q
    ||||||| |||||||||||||||||||||||||    
T  42874568 tgtgattacattgaattatgtcattttctcaaa 42874536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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