View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18121_high_20 (Length: 233)
Name: NF18121_high_20
Description: NF18121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18121_high_20 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 35302823 - 35302591
Alignment:
| Q |
1 |
tcatcaacttcctcaaacaacaacctgcgaaaccatattccaccnnnnnnntctggtttcaaactctatgaaagaagaaactctttgaaaaatattcacc |
100 |
Q |
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| T |
35302823 |
tcatcaacttcctcaaacaacaacctgcgaaaccatattccaccaaaaaaatctggtttcaaactctatgaaagaagaaactctttgaaaaatcttcacc |
35302724 |
T |
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| Q |
101 |
taaacccattacttcctgttttctcttcaaattcaaacaacccttcaagcttttcacctagaaaacctgaaattttgtctcctagtatcctagattttcc |
200 |
Q |
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| T |
35302723 |
taaacccattacttcctgttttctcttcaaattcaaacaacccttcaagcttttcacctagaaaacctgaaattctgtctcctagtatcctagattttcc |
35302624 |
T |
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| Q |
201 |
tgcgcttgttcttagccctgttacacctcttat |
233 |
Q |
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| T |
35302623 |
tgcgcttgttcttagccctgttacacctcttat |
35302591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 3840353 - 3840411
Alignment:
| Q |
175 |
ttgtctcctagtatcctagattttcctgcgcttgttcttagccctgttacacctcttat |
233 |
Q |
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| T |
3840353 |
ttgtcacctagtatcctagattttccttctcttgttcttagcccggttacaccacttat |
3840411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 83
Target Start/End: Original strand, 3840239 - 3840267
Alignment:
| Q |
55 |
ggtttcaaactctatgaaagaagaaactc |
83 |
Q |
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| T |
3840239 |
ggtttcaaactctatgaaagaagaaactc |
3840267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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