View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18121_high_3 (Length: 468)

Name: NF18121_high_3
Description: NF18121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18121_high_3
NF18121_high_3
[»] chr3 (2 HSPs)
chr3 (13-468)||(44464975-44465430)
chr3 (121-452)||(39355364-39355694)


Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 13 - 468
Target Start/End: Complemental strand, 44465430 - 44464975
Alignment:
Q  13 tcaggtggacaattggtatgcttctgtttgtaataatttatgaattcatgtagtttaaagtgttaatcgagagacggttatcacaatggtcaggatgtcg 112  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  44465430 tcaggtggacaattggtatgcttctgtttctaataatttatgacttcatgtattttaaagtgttaatcaagagacggttatcacaatggtcaggatgtcg 44465331  T
Q  113 tattctatgacaagtcctctgacaggagaaccnnnnnnntttgtttagagtagcaaggcattttataattaatcacaatttttcaaataaaaacgcgcac 212  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44465330 tattctatgacaagtcctctgacaggagaaccaaaaaaatttgtttagagtagcaaggcattttataattaatcacaatttttcaaataaaaacgcgcac 44465231  T
Q  213 ccttacacttagaaactttcttcatattaatttaggagtcacatttgcttaggagtgtggtcagtttaattagtgggccaggtgcaatacctagatgaat 312  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44465230 ccatacacttagaaactttcttcatattaatttaggagtcacatttgcttaggagtgtggtcagtttaattagtgggccaggtgcaatacctagatgaat 44465131  T
Q  313 ttgattagtttcttgcctttgattttgcaaagtatacaatttcctgcgctgcagtactataaatgaaacttatgctttcaactcagggtcatggaagtga 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44465130 ttgattagtttcttgcctttgattttgcaaagtatacaatttcctgcgctgcagtactataaatgaaacttatgctttcaactcagggtcatggaagtga 44465031  T
Q  413 tgtgaattatataaacccttcaagagtttgctttgcagaagacgtgaaagcattgc 468  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44465030 tgtggattacataaacccttcaagagtttgctttgcagaagacgtgaaagcattgc 44464975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 121 - 452
Target Start/End: Original strand, 39355364 - 39355694
Alignment:
Q  121 gacaagtcctctgacaggagaaccnnnnnnntttgtttagagtagcaaggcattttataattaatcacaatttttcaaataaaaacgcgcacccttacac 220  Q
    |||||||| |||||||||||||||       ||| |||||||||| ||||||||||| ||||||| ||  |||||||||||||||||| |||||||||||    
T  39355364 gacaagtcttctgacaggagaaccaaacaa-tttatttagagtagtaaggcattttagaattaatgacgttttttcaaataaaaacgcccacccttacac 39355462  T
Q  221 ttagaaactttcttcatattaatttaggagtcacatttgcttaggagtgtggtcagtttaattagtgggccaggtgcaatacctagatgaatttgattag 320  Q
    || ||||||||||||  |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| || |||||| ||||||||||||||    
T  39355463 ttggaaactttcttctcattaatttaggagtcacaattgcttaggagtgtggtcagtttgattagtgggccaggttcattacctaaatgaatttgattag 39355562  T
Q  321 tttcttgcctttgattttgcaaagtatacaatttcctgcgctgcagtactataaatgaaacttatgctttcaactcagggtcatggaagtgatgtgaatt 420  Q
    || ||||||||||||||| | |||||||||||||||||| |||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||| | |    
T  39355563 ttccttgcctttgattttacgaagtatacaatttcctgcactgcagtagtataaattaaactcatgctttcaactcagggtcatggaagagatgtggact 39355662  T
Q  421 atataaacccttcaagagtttgctttgcagaa 452  Q
     |||||| || |||||||||||||||||||||    
T  39355663 gtataaatccctcaagagtttgctttgcagaa 39355694  T

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