View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18121_high_6 (Length: 391)
Name: NF18121_high_6
Description: NF18121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18121_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 27422738 - 27422930
Alignment:
| Q |
18 |
caaaattgacgctcctatattat-ttatttaatcatgttggcgattcaggcgcgtaaagggaattccttacctattttggcttgttgaagtctttagccg |
116 |
Q |
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| T |
27422738 |
caaaattgacgctcctatattatgttatttaatcatgttggcgattcaggcgcgtaaagggaattccttacctattttggcttgttgaagtctttagccg |
27422837 |
T |
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| Q |
117 |
cttattaacaggtggaagcaagccatttatttctgcttggattatgtgttggtggctactgctttgtagctgacaaattgtgttgtagggggt |
209 |
Q |
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| T |
27422838 |
cttattaacaggtggaagcaagccatttatttctgcttggattatgtgttggtggctactgctttgtagctgacaaattgtgttgtacggggt |
27422930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 229 - 300
Target Start/End: Original strand, 27423075 - 27423146
Alignment:
| Q |
229 |
cacatcatgaattccaacactgtgatttcaaccacgagccccaaaactcatcgcgtcactgcagcctcatct |
300 |
Q |
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| T |
27423075 |
cacatcatgaattccaacactgtgatttcaaccacgagccccaaaactcatcgcgtcactgcagcctcatct |
27423146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 330 - 382
Target Start/End: Original strand, 27423147 - 27423199
Alignment:
| Q |
330 |
tacacacattcgcgagctgcaagcattcttttgcttcctattatcagtattat |
382 |
Q |
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| T |
27423147 |
tacacacattcgcgagctgcaagcattcttttgcttcccattatcagtattat |
27423199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 19683642 - 19683587
Alignment:
| Q |
76 |
ggaattccttacctattttggcttgttgaagtctttagccgcttattaacaggtgga |
132 |
Q |
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| T |
19683642 |
ggaactccttaattattttggctt-ttgaagtctttagctgcttattaacaggtgga |
19683587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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