View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18121_low_11 (Length: 381)
Name: NF18121_low_11
Description: NF18121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18121_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 26492033 - 26491666
Alignment:
| Q |
1 |
tagggaagaaaaacatatttaattctaattgaaaatgattatgtaaattttactaagcttttagatattgttttgagttgacaccattcatgtatgtatt |
100 |
Q |
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| T |
26492033 |
tagggaacaaaaacatatttaattctaattgaaaatgattatgtaaattttactaagcttttagatattgttttaagttg-caccattcatgtatatatt |
26491935 |
T |
|
| Q |
101 |
gcagttagagaagcagaagaactagactggggaatgagaaagaggatagctatgggaatagcttactgtctagaccacatgcatcaactcacaccaccca |
200 |
Q |
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| T |
26491934 |
gcagttagagaagcagaagagctagactggggaatgagaaagaggatagctatgggaatagcttactgtctagaccacatgcataatctcacaccaccca |
26491835 |
T |
|
| Q |
201 |
tttcccacagaaatctgttatcttcttctatatacctcactgaagattatgctgctaaaatatcagaccttagtttctgcactaacaaagttgatacaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26491834 |
tttcccacagaaatctgttatcttcttctatatacctaactgaagattatgctgctaaaatatcagaccttagtttctgcaccgacaaagttgatacaaa |
26491735 |
T |
|
| Q |
301 |
gaacggttacgaaaaaacttcagcagaagaagtaaaggacaatgtatatagttttggtgtaatattatt |
369 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26491734 |
gaaccgttacgaaaaaacttcagcagaagaagtaaaggacaatgtatatagttttggtgtaatattatt |
26491666 |
T |
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