View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18121_low_13 (Length: 321)
Name: NF18121_low_13
Description: NF18121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18121_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 28981950 - 28982244
Alignment:
| Q |
13 |
aaaatcacttttatatatattctatacccttctatctgtctcatttaaaatagtgatggggatgtttgaggccatccaatccaaaccaattagaataaca |
112 |
Q |
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| T |
28981950 |
aaaatcacttttatatatattctatacccttctatctgtctcatttaaaatagtgatggggatgtttgaggccatccaatccaaaccaattagaataaca |
28982049 |
T |
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| Q |
113 |
tgagtaactctaaactttttcctaccattccatttgtttgtttttatctgtcccattaagttatactttggagatgttttcccattttttaggtgcttgc |
212 |
Q |
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| T |
28982050 |
tgagtaactctaaactttttcctaccattccatttgtttgtttttatctgtcccattaagttatactttggagatgttttcccattttttaggtgcttgc |
28982149 |
T |
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| Q |
213 |
cggaacaacctgttacactttcttccattaaattgaagtggttaatttaccattactaaatatgctactaatcaacgttggttatggagaagtgt |
307 |
Q |
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| T |
28982150 |
cggaacaacctgttacactttcttccattaaatggaagtggttaatttaccatcactaaatatgctactaatcaacgttggttatggagaagtgt |
28982244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 28966307 - 28966489
Alignment:
| Q |
21 |
ttttatatatattctatacccttctatctgtctcatttaaaatagtgatggggatgtttgaggccatccaatccaaaccaattagaataacatgagtaac |
120 |
Q |
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| T |
28966307 |
ttttatatatattatatacccttccatctgtctcatgtaaaatagtgatagagatgtttgaggccaccaaat-----ccaattaaaataatatgaataac |
28966401 |
T |
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| Q |
121 |
tctaaactttttcctaccattccatttgtttgtttttatctgtcccatta---agttatactttggagatgttttcccattttttagg |
205 |
Q |
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| T |
28966402 |
tctaaacttttccctaccatttcttttgtttgtttttatttgtcccattaattagttatacattggagatgttttcccattttttagg |
28966489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 28942560 - 28942734
Alignment:
| Q |
25 |
atatatattctatacccttctatctgtctcatttaaaatagtgatggggatgtttgaggccatccaatccaaaccaattagaataacatgagtaactcta |
124 |
Q |
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| T |
28942560 |
atatatattctatacccttctatctgtctcatgtaaaatcatgatggggatgtttgaggc----------aaaccaattagagtaatatgaataactcta |
28942649 |
T |
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| Q |
125 |
aactttttcctaccattccatttgtttgtttttatctgtcccatta---agttatactttggagatgttttcccattttttaggt |
206 |
Q |
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| T |
28942650 |
aactttttcctaccatttcttttgtttgtttttatttgtcccattattcagtaaaactttggagatgttttcctattttttaggt |
28942734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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