View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18121_low_18 (Length: 261)
Name: NF18121_low_18
Description: NF18121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18121_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 41820743 - 41820511
Alignment:
| Q |
14 |
aggcaaattctgtacattatgatcaaaataagatacaaaaattgagattcaattaatattacaggaccaatttcaacacaaaccctaaaccccataaatn |
113 |
Q |
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| T |
41820743 |
aggcaaattctgtacattaagatcaaaataagatacaaaaattgagattcaattaatattacaggaccaatttcaacacaaaccctaaaccccataaata |
41820644 |
T |
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| Q |
114 |
nnnnnnntggtatttaatccaataagataattgtaaaaatgaaattgaaatgaactaactaaccatggtgggtttgaattctttcaatttctgcaatttc |
213 |
Q |
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| T |
41820643 |
aaaaaa-tggtatttaatccaataagataattgtaaaaatgaaattgaaatgaactaactaaccatggtgggtttgaattctttcaatttctgcaatttc |
41820545 |
T |
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| Q |
214 |
ttaagctccttgccacgattctcgagttcttcat |
247 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
41820544 |
ttaagctccttgccacgattctcgagttcttcat |
41820511 |
T |
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