View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18121_low_27 (Length: 227)
Name: NF18121_low_27
Description: NF18121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18121_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 48877443 - 48877223
Alignment:
| Q |
1 |
caatattcctaaacagctccaagtctctaatccggacagcatttgtaagttcaaagtaaggcctcaacactgtctccatttcgtattgcataaagacagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
48877443 |
caatattcctaaacagctccaagtctctaatccggacagcatttgtaagttcaaagtaaggcctcaacactgtctccatttcgtattgcataaagacaat |
48877344 |
T |
|
| Q |
101 |
tccagttccggtatttctgccaaccgcaaacacactatgatagtctacttgttacattgaattcgaaaaccctgagttgcactagagttttacgagcagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48877343 |
tccagttccggtatttctgccaaccgcaaacacactatgatagtctacttgttacattgaattcgaaaaccctgagttgcactagagttttacgagcagc |
48877244 |
T |
|
| Q |
201 |
ctgcaggataaactctaatgc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
48877243 |
ctgcaggataaactctaatgc |
48877223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 208
Target Start/End: Original strand, 53455900 - 53456067
Alignment:
| Q |
40 |
catttgtaagttcaaagtaaggcctcaacactgtctccatttcgtattgcataaagacagttccagttccggtatttctgccaaccgcaaacacactatg |
139 |
Q |
| |
|
|||||||||| ||||||||||| || | | || |||||||| | | ||||||||||| |||| | || ||||| ||| ||||| | |||| ||||||| |
|
|
| T |
53455900 |
catttgtaagctcaaagtaaggtcttagcgctttctccattcctttctgcataaagacggttc--gctcaggtatctctcccaacagtaaacgcactatg |
53455997 |
T |
|
| Q |
140 |
atagtctacttgttacattgaattcgaaaaccctgagttgc-actagagttttacgagcagcctgcagga |
208 |
Q |
| |
|
|||| | |||||||||||||||||||||||||| ||| ||| ||| ||| |||||||||||| ||||||| |
|
|
| T |
53455998 |
atagcccacttgttacattgaattcgaaaaccccgagctgcaactggagctttacgagcagcttgcagga |
53456067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University