View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18121_low_3 (Length: 796)

Name: NF18121_low_3
Description: NF18121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18121_low_3
NF18121_low_3
[»] chr7 (8 HSPs)
chr7 (339-780)||(22781895-22782340)
chr7 (14-331)||(22782370-22782687)
chr7 (24-260)||(22778317-22778553)
chr7 (14-237)||(22774961-22775184)
chr7 (14-238)||(22765140-22765364)
chr7 (26-284)||(16085070-16085328)
chr7 (10-201)||(23278382-23278573)
chr7 (17-136)||(22770263-22770382)
[»] scaffold0370 (2 HSPs)
scaffold0370 (537-598)||(9028-9089)
scaffold0370 (537-598)||(14318-14379)
[»] chr6 (2 HSPs)
chr6 (678-735)||(17418456-17418513)
chr6 (679-732)||(3412674-3412727)
[»] chr2 (1 HSPs)
chr2 (541-616)||(8821847-8821922)
[»] chr1 (1 HSPs)
chr1 (539-620)||(2883066-2883147)


Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 339 - 780
Target Start/End: Complemental strand, 22782340 - 22781895
Alignment:
Q  339 atatttggtatgtcttgattttccccataaaatctatacttgtattctctatatttaaaccagtcatagattgttaaataaagcatatgtgttagttaca 438  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22782340 atatttggtatgtcttgatttcccccctaaaatctatacttgtattctctatatttaaaccagtcatagattgttaaataaaacatatgtgttagttaca 22782241  T
Q  439 atgcatgaaaaagtatt----taccatgtaactattgcgtactaggcaaacgacgtgatctgcaatgcttaatcattcatttgactagtttcgcaagtag 534  Q
    |||||||||||||||||    |||  |||||||||||||||||||  ||||||| |||||| |||||||||||| |||||| |||||||||| |||||||    
T  22782240 atgcatgaaaaagtattgacgtacggtgtaactattgcgtactagctaaacgacatgatctacaatgcttaatccttcattcgactagtttcacaagtag 22782141  T
Q  535 tccatgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatccattgacaaggtctttggtgcatatc 634  Q
    | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22782140 tgcatgataactcccatcctagtgagattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatctattgacaaggtctttggtgcatatc 22782041  T
Q  635 tccaccagagagcgtgtccattgacaaggtccttgatgcatatctccaccagagagtgtgtcttctccctcactcttcaaagtggttagtggtgctaaga 734  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22782040 tccaccagagagcgtgtccattgacaaggtccttgatgcatatctccaccagagagtgtgtcttctccctcactcttcaaagtggttagtggtgctaaga 22781941  T
Q  735 acatggtagataaccatgcatgtgaggagtcttgtagtggatagtg 780  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  22781940 acatggtagataaccatgcatgtgaggagtcttgtagtggatagtg 22781895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 22782687 - 22782370
Alignment:
Q  14 cacagagcagtgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatag 113  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22782687 cacagagcagtgacaaataagaacaagagaaggacttctaatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatag 22782588  T
Q  114 atgctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22782587 atgctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgc 22782488  T
Q  214 aaggataaaggaacaagtaatagagaaataaaaaatcaaagaaaatgcccagtttgagaaaatgaggaaagtgatggagattatgtggttttctcctttt 313  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22782487 aaggataaaggaacaagtaatagagaaataaaaaataaaagaaaatggacagtttgagaaaatgaggaaagggatggagattatgtggttttctcctttt 22782388  T
Q  314 aataatgcatattttctg 331  Q
    ||||||||||||||||||    
T  22782387 aataatgcatattttctg 22782370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 24 - 260
Target Start/End: Complemental strand, 22778553 - 22778317
Alignment:
Q  24 tgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaaca 123  Q
    |||||||| ||||||| ||||||| |||| ||||||||||||| || |||| |||||| |||||||||||||| ||| |||||||||||||||||||| |    
T  22778553 tgacaaatcagaacaaaagaaggatttcttatgcatcatttttattccctcgagatgacgttgaagttgagccctttgatcatatgatagatgctcaaaa 22778454  T
Q  124 tcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaaggataaag 223  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||| |||||||    
T  22778453 ccccaagatgtaccagaaagtcaagtatggagattatttgaggcattccttaaagagaaaaatggagcgaaaaacacacaccgatgtggcaaagataaag 22778354  T
Q  224 gaacaagtaatagagaaataaaaaatcaaagaaaatg 260  Q
    ||||| ||||||| || |||| || ||||||||||||    
T  22778353 gaacatgtaatagtgacataacaactcaaagaaaatg 22778317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 22775184 - 22774961
Alignment:
Q  14 cacagagcagtgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatag 113  Q
    ||||||||| |||||||||| |||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||| ||||| ||| ||||||||||||    
T  22775184 cacagagcaatgacaaataaaaacaagagaaggacttctcatgcaacatttgtgtttcctcgagatgatgttgaagtggagccctttgatcatatgatag 22775085  T
Q  114 atgctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgc 213  Q
    |||||||| | || |||||||||||||||||   || |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||    
T  22775084 atgctcaaaaccctaagatgtaccagaaagtgttgtatggagattatttgaggcaatccatgaagagaaaaatggagggaaaaacacacactgatgtggc 22774985  T
Q  214 aaggataaaggaacaagtaataga 237  Q
    || |||||||| | ||||||||||    
T  22774984 aaagataaaggcataagtaataga 22774961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 22765364 - 22765140
Alignment:
Q  14 cacagagcagtgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatag 113  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| | |||| ||||||||||||| ||||||||||| ||||||||||||    
T  22765364 cacagagcagtaacaaataagaacaaaagaaggacttcccatgcatcatttttgatccctcgagatgatgttgaaattgagccatttgatcatatgatag 22765265  T
Q  114 atgctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgc 213  Q
    ||||| || |  |||| || ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| | |||||| ||    
T  22765264 atgctgaaaacaccaaaatttaccagaaagtcaagtttggagattatttaaggcaatccatgaagagaaaaatggagggaaaaacacatattgatgtggc 22765165  T
Q  214 aaggataaaggaacaagtaatagag 238  Q
     | ||||||||||||  ||||||||    
T  22765164 caagataaaggaacagttaatagag 22765140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 26 - 284
Target Start/End: Original strand, 16085070 - 16085328
Alignment:
Q  26 acaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaacatc 125  Q
    |||||||||||||||| |||||  ||| ||||| ||||| |||| |||| ||| ||||||||||||||||| ||| | ||||||||| ||||| || | |    
T  16085070 acaaataagaacaagaaaaggatgtcttatgcaacatttgtgttccctcgagaagatgttgaagttgagccctttgaccatatgataaatgctgaaaacc 16085169  T
Q  126 ccaagatgtaccagaaagtcaagtttggagattatttgaggcattcc-ttgaagagaaaaatggagggaaaaacacacactgatgttgcaaggataaagg 224  Q
    |||| |||||||||||||||| || |||||||||||||||| | ||| ||||| |||| |  ||||||||||||| |||||||| | ||||||| |||||    
T  16085170 ccaaaatgtaccagaaagtcaggtatggagattatttgagggaatcctttgaaaagaatataggagggaaaaacaaacactgatatggcaaggagaaagg 16085269  T
Q  225 aacaagtaatagagaaataaaaaatcaaagaaaatgcccagtttgagaaaatgaggaaag 284  Q
    || | ||||||||  ||||| ||||  ||||||| | |||||||||||| | ||||||||    
T  16085270 aatatgtaatagaagaataacaaatttaagaaaa-gaccagtttgagaatacgaggaaag 16085328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 23278382 - 23278573
Alignment:
Q  10 ggagcacagagcagtgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatg 109  Q
    |||||| |||||  |||||||||||||||||||||||||||||  || |||||||||||| || |  ||||||| |||| ||| ||| ||| ||||||||    
T  23278382 ggagcatagagctatgacaaataagaacaagagaaggacttcttttgtatcatttttgttcccccgggatgatgctgaacttgggccctttgatcatatg 23278481  T
Q  110 atagatgctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacaca 201  Q
    ||||||| |||| |||||||||||||| || || |||  | |||||| |||||||||||  ||||||| || ||| |||| |||||||||||    
T  23278482 atagatgatcaaaatcccaagatgtacaaggaaatcacttatggagagtatttgaggcacaccttgaataggaaattggaaggaaaaacaca 23278573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 22770382 - 22770263
Alignment:
Q  17 agagcagtgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatg 116  Q
    |||||| | |||||||||||||||| ||||||| ||  |  ||||| |||||| ||||| | ||||| |||| | | | ||||  |||||||||||||||    
T  22770382 agagcaatcacaaataagaacaagaaaaggactacttttatatcatatttgttccctcagggtgatgctgaaatcggggcattagatcatatgatagatg 22770283  T
Q  117 ctcaacatcccaagatgtac 136  Q
     |||| ||||||||||||||    
T  22770282 atcaaaatcccaagatgtac 22770263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0370 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 537 - 598
Target Start/End: Original strand, 9028 - 9089
Alignment:
Q  537 catgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctcct 598  Q
    |||||||||||||||  ||||||||| ||||||||| |||||| ||||||||||||||||||    
T  9028 catgataactcccatgttagtgggatcgtggcgccctatgttcggcttcaatctcctctcct 9089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0370; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 537 - 598
Target Start/End: Original strand, 14318 - 14379
Alignment:
Q  537 catgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctcct 598  Q
    |||||||||||||||  ||||||||| ||||||||| |||||| ||||||||||||||||||    
T  14318 catgataactcccatgttagtgggatcgtggcgccctatgttcggcttcaatctcctctcct 14379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 678 - 735
Target Start/End: Complemental strand, 17418513 - 17418456
Alignment:
Q  678 ctccaccagagagtgtgtcttctccctcactcttcaaagtggttagtggtgctaagaa 735  Q
    |||||| | ||| |||| ||||||| ||||| ||||||||||||||||||||||||||    
T  17418513 ctccacaaaagattgtgacttctccatcacttttcaaagtggttagtggtgctaagaa 17418456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 732
Target Start/End: Complemental strand, 3412727 - 3412674
Alignment:
Q  679 tccaccagagagtgtgtcttctccctcactcttcaaagtggttagtggtgctaa 732  Q
    |||||||||||  |||||||||  ||||||| ||||||| ||||||||||||||    
T  3412727 tccaccagagatcgtgtcttctatctcactcctcaaagtagttagtggtgctaa 3412674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 616
Target Start/End: Original strand, 8821847 - 8821922
Alignment:
Q  541 ataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatccattgaca 616  Q
    |||||||||||  ||||||||| ||||||||| |  ||| |||||| | ||||||||| ||||||||| |||||||    
T  8821847 ataactcccatggtagtgggatcgtggcgccccacattcggcttcagtttcctctcctagacatgatctattgaca 8821922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 539 - 620
Target Start/End: Complemental strand, 2883147 - 2883066
Alignment:
Q  539 tgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatccattgacaaggt 620  Q
    ||||||||| |||  |||||||||  ||| | || |||||| |||| ||||||||||| | |||||||||| ||||||||||    
T  2883147 tgataactctcatggtagtgggatcatggtgtcctatgttcggctttaatctcctctcatcgacatgatccgttgacaaggt 2883066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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