View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18121_low_30 (Length: 225)
Name: NF18121_low_30
Description: NF18121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18121_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 26492420 - 26492309
Alignment:
| Q |
1 |
tgtgaagagaataagccattcacaaggatgatggtttttgagtatgctccgaatggaacgctgtttgagcatctacatagtaagtcctgttatgtttcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26492420 |
tgtgaagagaataagccattcacaaggatgatggtttttgagtatgctccgaatggaacgctgtttgagcatctacatagtaagtcctgttatg-ttcac |
26492322 |
T |
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| Q |
101 |
aatttagttgcag |
113 |
Q |
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| T |
26492321 |
aatttagttgcag |
26492309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 116 - 225
Target Start/End: Complemental strand, 26492143 - 26492034
Alignment:
| Q |
116 |
ttgcaggatttgcaattacacacgtattacaatgacaaatttcaacatgagnnnnnnnacggggactaaaataaaataacaaggaccaaaatcaaaaagc |
215 |
Q |
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| T |
26492143 |
ttgcaggatttgcaattacacacgtattacaatgacaaatttcaacatgaatttttttacggggactaaaataaaataacaaggaccaaaatcaaaaagc |
26492044 |
T |
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| Q |
216 |
gatatatttt |
225 |
Q |
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|||||||||| |
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| T |
26492043 |
gatatatttt |
26492034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 33062686 - 33062733
Alignment:
| Q |
177 |
gggactaaaataaaataacaaggaccaaaatcaaaaagcgatatattt |
224 |
Q |
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| T |
33062686 |
gggactaaaacaaaacaacaaggaccaaaatcaaaaatcgatatattt |
33062733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 35832217 - 35832150
Alignment:
| Q |
16 |
ccattcacaaggatgatggtttttgagtatgctccgaatggaacgctgtttgagcatctacatagtaa |
83 |
Q |
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| T |
35832217 |
ccattcacaaggatgatggtgttggagtatgctccaaatggaagcttattcgagcatctacatggtaa |
35832150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 14947737 - 14947783
Alignment:
| Q |
177 |
gggactaaaataaaataacaaggaccaaaatcaaaaagcgatatatt |
223 |
Q |
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|||||||||| ||||||||||||||||||| ||||||| | |||||| |
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| T |
14947737 |
gggactaaaacaaaataacaaggaccaaaaacaaaaagtggtatatt |
14947783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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