View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18121_low_32 (Length: 201)
Name: NF18121_low_32
Description: NF18121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18121_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 9380852 - 9381018
Alignment:
| Q |
18 |
atgaatgcaaaaagttaccgtggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtc |
117 |
Q |
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| T |
9380852 |
atgaatgcaaaaagttaccatggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtc |
9380951 |
T |
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| Q |
118 |
aaaagccttagaattcttaaaagatgttccatacttggcaattgttcctgctgttagtctactatgt |
184 |
Q |
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| T |
9380952 |
aaaagccttagaattcttaaaagatgttccatacttagcaattgttcctgctgttagtctactatgt |
9381018 |
T |
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Target: chr4 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 55738865 - 55739024
Alignment:
| Q |
18 |
atgaatgcaaaaagttaccgtggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtc |
117 |
Q |
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|||||||||| || |||| ||||||||||||||| | || |||||||| ||||| ||||| |||||||| ||||||||||||||||| ||||| | || |
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| T |
55738865 |
atgaatgcaagaaactaccttggaacctaattttgttacttggagctggttttgctttagctgatggagttcaatctagtggtctagcagatgtgctttc |
55738964 |
T |
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| Q |
118 |
aaaagccttagaattcttaaaagatgttccatacttggcaattgttcctgctgttagtct |
177 |
Q |
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| T |
55738965 |
taaagctttagatttcttagaagatgccccatatttggcaattgctcctgcagttagtct |
55739024 |
T |
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