View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18121_low_4 (Length: 720)

Name: NF18121_low_4
Description: NF18121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18121_low_4
NF18121_low_4
[»] chr2 (5 HSPs)
chr2 (13-703)||(4306945-4307635)
chr2 (629-703)||(39606587-39606661)
chr2 (81-144)||(27031552-27031614)
chr2 (69-135)||(27073291-27073356)
chr2 (98-144)||(26991641-26991687)
[»] chr5 (6 HSPs)
chr5 (582-703)||(14161498-14161619)
chr5 (616-703)||(39011486-39011573)
chr5 (629-703)||(35413591-35413665)
chr5 (622-703)||(22228285-22228366)
chr5 (629-703)||(7566689-7566761)
chr5 (629-703)||(31629589-31629663)
[»] chr1 (2 HSPs)
chr1 (135-242)||(33306248-33306355)
chr1 (616-680)||(26650097-26650161)
[»] chr3 (4 HSPs)
chr3 (288-368)||(30868816-30868896)
chr3 (136-211)||(18096364-18096436)
chr3 (629-703)||(17580915-17580989)
chr3 (644-691)||(6719706-6719753)
[»] chr6 (2 HSPs)
chr6 (629-703)||(13495987-13496061)
chr6 (98-144)||(34693899-34693945)
[»] chr4 (1 HSPs)
chr4 (629-703)||(51073288-51073362)
[»] scaffold0309 (1 HSPs)
scaffold0309 (629-703)||(1881-1955)
[»] chr8 (1 HSPs)
chr8 (647-703)||(16699294-16699350)


Alignment Details
Target: chr2 (Bit Score: 651; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 13 - 703
Target Start/End: Complemental strand, 4307635 - 4306945
Alignment:
Q  13 cagagatggtgggtgagttgggaaggatgattctgagtttagaaaatgagtatctgtgttaaagtttgattagatattagcttaagacaattgcttgtgt 112  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4307635 cagagatggtgggtgagttggggaggatgattctgagtgtagaaaatgagtatctgtgttaaagtttgattagatattagcttaagacaattacttgtgt 4307536  T
Q  113 aacaagtaattgcagagtctagtaactaactaactgttttgacagttatggaagttacaatagttagttatagttaaacaactaactatagttaagcttg 212  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4307535 aacaagtaattgcagagtctagtaactaactaactcttttgacagttatggaagttacaatagttagttatagttaaacaactaactatagttaagcttg 4307436  T
Q  213 tgaggtacatagcatagtataaataagtgtatctcagaattgtaaagactaagatttgtgaatagaattctctacatttcaatgctttgtttccaagttc 312  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4307435 tgaggtacatagcatagtataaataagtgtatctcagtattgtaaagactaagatttgtgaatagaattctctacatttcaatgctttgtttccaagttc 4307336  T
Q  313 atagaaaattttcctctcttttccattctatggagattcaatcttatattttcacaatctgatctgcagactgataagagagtaacgaacctaaagcatg 412  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4307335 atagaaaattttcctctcttttccattctatagagattcaatcttatattttcacaatctgatctgcagactgataagagagtaacgaacctaaagcatg 4307236  T
Q  413 aatgacgtaagagtaaatgattttcagttggtgaattagtaggagtaaatggtagatataataagtggcaattttcttattaagaggctttgaaggttgt 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4307235 aatgacgtaagagtaaatgattttcagttggtgaattagtaggagtaaatggtagatataataagtggcaattttcttattaagaggctttgaaggttgt 4307136  T
Q  513 ctgacagataaaacgtttttgttggctcgtgtaactgataaaattttaatgaaggttgcctgatgaatatagagaatagctcacttttcattatttcatt 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||    
T  4307135 ctgacagataaaacgtttttgttggctcgtgtaactgataaaattttaatgaaggttgcctgatgaatatagagactagctcacttttcattatttagtt 4307036  T
Q  613 tggtgtgcttttttcattggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctct 703  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4307035 tggtgtgcttttttcattggcattagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctct 4306945  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 629 - 703
Target Start/End: Original strand, 39606587 - 39606661
Alignment:
Q  629 ttggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctct 703  Q
    ||||||| ||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||  ||||||||||    
T  39606587 ttggcattagacacttatctttgtaactttgtcgagaggttctctctgcacaccttgtgcgagatgaatctctct 39606661  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 27031614 - 27031552
Alignment:
Q  81 attagatattagcttaagacaattgcttgtgtaacaagtaattgcagagtctagtaactaacta 144  Q
    ||||||||||| |||| ||||||| ||||||||||||||||||||| |||||||||||||||||    
T  27031614 attagatattaactta-gacaattacttgtgtaacaagtaattgcacagtctagtaactaacta 27031552  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 27073291 - 27073356
Alignment:
Q  69 tgttaaagtttgattagatattagcttaagacaattgcttgtgtaacaagtaattgcagagtctagt 135  Q
    ||||||||| | ||||||||||| |||| ||||||| ||||||||||||||||||||| ||||||||    
T  27073291 tgttaaagtgtaattagatattaactta-gacaattacttgtgtaacaagtaattgcacagtctagt 27073356  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 26991687 - 26991641
Alignment:
Q  98 gacaattgcttgtgtaacaagtaattgcagagtctagtaactaacta 144  Q
    ||||||| | ||| ||||||||||||||| |||||||||||||||||    
T  26991687 gacaattacctgtctaacaagtaattgcacagtctagtaactaacta 26991641  T

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Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 582 - 703
Target Start/End: Original strand, 14161498 - 14161619
Alignment:
Q  582 tagagaatagctcacttttcattatttcatttggtgtgcttttttcattggcatcagacacttaactttgtaactttgttgagtgattctctctgcacac 681  Q
    |||||| |||||| ||||| |||||||| |||| ||||||||||||||||||||||||||||||||||| || |||||| |||||||||| |||||||||    
T  14161498 tagagactagctctcttttaattatttcgtttgttgtgcttttttcattggcatcagacacttaactttatatctttgtagagtgattctttctgcacac 14161597  T
Q  682 cttgtgcgagtagaatctctct 703  Q
    ||||||||||| ||||||||||    
T  14161598 cttgtgcgagttgaatctctct 14161619  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 616 - 703
Target Start/End: Original strand, 39011486 - 39011573
Alignment:
Q  616 tgtgcttttttcattggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctct 703  Q
    ||||||| || ||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||    
T  39011486 tgtgcttcttccattggcattagacacttatctttgtaactttgtagagtgattctctctgcacaccttgtgcgagatgaatctctct 39011573  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 703
Target Start/End: Complemental strand, 35413665 - 35413591
Alignment:
Q  629 ttggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctct 703  Q
    ||||||| | ||||||| |||||||||||| | ||| | ||||||||||||||||||||||||  ||||||||||    
T  35413665 ttggcattatacacttatctttgtaactttatcgagaggttctctctgcacaccttgtgcgagatgaatctctct 35413591  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 622 - 703
Target Start/End: Original strand, 22228285 - 22228366
Alignment:
Q  622 tttttcattggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctct 703  Q
    |||| ||||||||| ||||||| |||| ||||| ||||| ||||  | ||||||||||||||| ||||||||||| ||||||    
T  22228285 ttttccattggcattagacactaaactatgtaattttgtcgagtagtcctctctgcacaccttatgcgagtagaacctctct 22228366  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 629 - 703
Target Start/End: Complemental strand, 7566761 - 7566689
Alignment:
Q  629 ttggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctct 703  Q
    ||||||| ||||| |||||||||||||||||| ||| | |||||| ||  |||||||||||||  ||||||||||    
T  7566761 ttggcattagacatttaactttgtaactttgtcgagaggttctctatg--caccttgtgcgagatgaatctctct 7566689  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 629 - 703
Target Start/End: Complemental strand, 31629663 - 31629589
Alignment:
Q  629 ttggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctct 703  Q
    ||||||| |||||||||||||||||||||| | ||| |  ||||||| ||||| || ||||||  ||||||||||    
T  31629663 ttggcattagacacttaactttgtaactttatcgagaggctctctctacacactttatgcgagatgaatctctct 31629589  T

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Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 135 - 242
Target Start/End: Original strand, 33306248 - 33306355
Alignment:
Q  135 taactaactaactgttttgacagttatggaagttacaatagttagttatagttaaacaactaactatagttaagcttgtgaggtacatagcatagtataa 234  Q
    ||||||||||||||| |||||||||||||| |||| |||| || |||||||||||| |||||||||||||||||| |||  ||||| ||| |||||||||    
T  33306248 taactaactaactgtcttgacagttatggatgttataataattggttatagttaaataactaactatagttaagcgtgttgggtacttagaatagtataa 33306347  T
Q  235 ataagtgt 242  Q
    ||||||||    
T  33306348 ataagtgt 33306355  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 616 - 680
Target Start/End: Original strand, 26650097 - 26650161
Alignment:
Q  616 tgtgcttttttcattggcatcagacacttaactttgtaactttgttgagtgattctctctgcaca 680  Q
    ||||||| || |||| |||| ||||||||| |||||||||||||| |||||||||| ||||||||    
T  26650097 tgtgcttcttacattagcattagacacttatctttgtaactttgtagagtgattctttctgcaca 26650161  T

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Target: chr3 (Bit Score: 61; Significance: 8e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 288 - 368
Target Start/End: Original strand, 30868816 - 30868896
Alignment:
Q  288 atttcaatgctttgtttccaagttcatagaaaattttcctctcttttccattctatggagattcaatcttatattttcaca 368  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||| | |||| |||||||||||||||||||||||||    
T  30868816 atttcaatgctttgtttccaagttcatagcaaattttcctttcttttctactctaaggagattcaatcttatattttcaca 30868896  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 18096436 - 18096364
Alignment:
Q  136 aactaactaactgttttgacagttatggaagttacaatagttagttatagttaaacaactaactatagttaagctt 211  Q
    |||||||||||||||||||| |||||||||||||||   |||||||||||||||| ||||||||||||||||||||    
T  18096436 aactaactaactgttttgactgttatggaagttaca---gttagttatagttaaataactaactatagttaagctt 18096364  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 629 - 703
Target Start/End: Complemental strand, 17580989 - 17580915
Alignment:
Q  629 ttggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctct 703  Q
    ||||||| ||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||  ||||||||||    
T  17580989 ttggcattagacacttatctttgtaactttgtcgagaggttctctctgcacaccttgtgcgagatgaatctctct 17580915  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 644 - 691
Target Start/End: Original strand, 6719706 - 6719753
Alignment:
Q  644 taactttgtaactttgttgagtgattctctctgcacaccttgtgcgag 691  Q
    ||||||||||||||||||||| | |||| |||||||||||||||||||    
T  6719706 taactttgtaactttgttgagaggttctttctgcacaccttgtgcgag 6719753  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 629 - 703
Target Start/End: Complemental strand, 13496061 - 13495987
Alignment:
Q  629 ttggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctct 703  Q
    ||||||| ||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||  ||||||||||    
T  13496061 ttggcattagacacttatctttgtaactttgtcgagaggttctctctgcacaccttgtgcgagatgaatctctct 13495987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 34693945 - 34693899
Alignment:
Q  98 gacaattgcttgtgtaacaagtaattgcagagtctagtaactaacta 144  Q
    ||||||| | ||| ||||||||||||||| |||||||||||||||||    
T  34693945 gacaattacctgtctaacaagtaattgcacagtctagtaactaacta 34693899  T

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Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 629 - 703
Target Start/End: Original strand, 51073288 - 51073362
Alignment:
Q  629 ttggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctct 703  Q
    ||||||| |||||||||||||||||||||||| ||| | ||||||||| ||||||||||||||  ||||||||||    
T  51073288 ttggcattagacacttaactttgtaactttgtcgagaggttctctctgtacaccttgtgcgagatgaatctctct 51073362  T

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Target: scaffold0309 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 703
Target Start/End: Original strand, 1881 - 1955
Alignment:
Q  629 ttggcatcagacacttaactttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctct 703  Q
    ||||||| | ||||||| |||||||||||| | ||| | ||||||||||||||||||||||||  ||||||||||    
T  1881 ttggcattatacacttatctttgtaactttatcgagaggttctctctgcacaccttgtgcgagatgaatctctct 1955  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 647 - 703
Target Start/End: Complemental strand, 16699350 - 16699294
Alignment:
Q  647 ctttgtaactttgttgagtgattctctctgcacaccttgtgcgagtagaatctctct 703  Q
    |||||||||||||||||| | |||||||||| |||||||||||||  ||||||||||    
T  16699350 ctttgtaactttgttgagaggttctctctgcgcaccttgtgcgagatgaatctctct 16699294  T

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