View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18121_low_5 (Length: 469)

Name: NF18121_low_5
Description: NF18121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18121_low_5
NF18121_low_5
[»] chr8 (7 HSPs)
chr8 (64-455)||(36940255-36940641)
chr8 (60-193)||(38660082-38660215)
chr8 (70-182)||(6015491-6015603)
chr8 (60-169)||(41649698-41649807)
chr8 (60-179)||(22938178-22938297)
chr8 (60-143)||(25246217-25246300)
chr8 (60-106)||(2455757-2455803)
[»] chr2 (7 HSPs)
chr2 (59-187)||(43790344-43790472)
chr2 (60-193)||(13389965-13390098)
chr2 (60-179)||(40745972-40746091)
chr2 (60-150)||(8164358-8164448)
chr2 (59-104)||(41519923-41519968)
chr2 (59-133)||(42950935-42951009)
chr2 (60-125)||(40726840-40726905)
[»] scaffold0006 (1 HSPs)
scaffold0006 (60-193)||(72085-72218)
[»] chr7 (8 HSPs)
chr7 (70-187)||(36846758-36846875)
chr7 (59-193)||(41886753-41886887)
chr7 (58-179)||(14629823-14629943)
chr7 (53-135)||(42250829-42250911)
chr7 (60-176)||(41531545-41531661)
chr7 (53-108)||(24307764-24307819)
chr7 (60-102)||(5064645-5064687)
chr7 (61-103)||(31276934-31276976)
[»] chr3 (5 HSPs)
chr3 (61-179)||(43786101-43786219)
chr3 (95-193)||(40803520-40803617)
chr3 (63-150)||(44064198-44064285)
chr3 (53-145)||(53714373-53714465)
chr3 (60-104)||(45297555-45297599)
[»] chr5 (8 HSPs)
chr5 (60-181)||(29412804-29412925)
chr5 (60-179)||(4301911-4302030)
chr5 (60-192)||(3309495-3309627)
chr5 (59-145)||(26318281-26318367)
chr5 (317-386)||(43458457-43458526)
chr5 (60-90)||(16689599-16689629)
chr5 (60-108)||(5747927-5747975)
chr5 (61-101)||(9142054-9142094)
[»] chr1 (7 HSPs)
chr1 (60-179)||(36152996-36153115)
chr1 (60-192)||(44948798-44948930)
chr1 (58-184)||(51606918-51607044)
chr1 (60-100)||(46134619-46134659)
chr1 (60-108)||(31768333-31768381)
chr1 (60-104)||(36385674-36385718)
chr1 (60-104)||(42383726-42383770)
[»] scaffold0051 (1 HSPs)
scaffold0051 (58-145)||(15016-15103)
[»] chr4 (8 HSPs)
chr4 (60-150)||(31681115-31681205)
chr4 (58-179)||(31805964-31806084)
chr4 (60-192)||(43780984-43781116)
chr4 (67-133)||(32622042-32622108)
chr4 (60-104)||(54006734-54006778)
chr4 (60-102)||(232049-232091)
chr4 (66-106)||(52523962-52524002)
chr4 (60-104)||(54008452-54008496)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 64 - 455
Target Start/End: Original strand, 36940255 - 36940641
Alignment:
Q  64 agtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttacttggta 163  Q
    ||||||| ||| ||||||||||| ||| |||||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||||||| ||    
T  36940255 agtatggaaaatggaagttcttttccaccacgggaaagtttaacctgagctgtagatttaatagttctttatttagatggccgagatcttttacttgata 36940354  T
Q  164 attgttgtaacttttttatggttattgtgtnnnnnnnnnnnnnnnctgaccccacccattcaatataattcatcatcttaaacccagaaaaatcagcttg 263  Q
    ||||||||||||||| ||||||||||||||               ||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||     
T  36940355 attgttgtaacttttatatggttattgtgtaaaaaaaaaa-----ctgaccccaccaattcaatataattcatcatctcaaacccagaaaaaccagctta 36940449  T
Q  264 ctcctcttcctcttatcctccattcacaaaacaagccatacaaatctaaaactcaaaatgatgaagaagaaaataactctgaatcaagaacaaaaacggt 363  Q
    |||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36940450 ctcctcttcctcttattctccattcacaaaacaaaccatagaaatctaaaactcaaaatgatgaagaagaaaataactctgaatcaagaacaaaaacggt 36940549  T
Q  364 gaagaagtttggtaaagaagatgcagaagcggatttaaagatccgaaatattgaacccaaatctgtaaatattaaaacccaacttcaatttg 455  Q
    ||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  36940550 gaagaagtttgataaagaagatgcagaagctgatttaaagatccaaaatattgaacccaaatttgtaaatattaaaacccaacttcaatttg 36940641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 60 - 193
Target Start/End: Original strand, 38660082 - 38660215
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttactt 159  Q
    ||||||||||||||||||||||| |||||| | | ||||||||||||||  |||| || ||||||||||||||||||| |||||||||||||| ||||||    
T  38660082 gtttagtatgggaaagggaagttgtttcccttgatgggaaagtttaaccacaaccataaatttaatagttttttatttggatggctgagatctcttactt 38660181  T
Q  160 ggtaattgttgtaacttttttatggttattgtgt 193  Q
    |||||||||||| |||||||||||||||||||||    
T  38660182 ggtaattgttgtgacttttttatggttattgtgt 38660215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 6015603 - 6015491
Alignment:
Q  70 ggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttacttggtaattgtt 169  Q
    |||| ||||||||||||||||| | || ||||||||||  ||  | |||||||||||||  ||||||| ||||| |||||||| ||||||| |||  |||    
T  6015603 ggaatgggaagttctttcccatgatggaaaagtttaacaagagtcatagatttaatagtaatttatttggatggttgagatctattacttgataagggtt 6015504  T
Q  170 gtaacttttttat 182  Q
    |||||||||||||    
T  6015503 gtaacttttttat 6015491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 41649807 - 41649698
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttactt 159  Q
    ||||| ||| |||||||||||||||||||||||| ||||||||  |||   | || ||||||||||| |||||||||| ||||||| |||||  | || |    
T  41649807 gtttaatataggaaagggaagttctttcccatcatgggaaagtcgaactatagccatagatttaatatttttttatttggatggctaagatccatgacct 41649708  T
Q  160 ggtaattgtt 169  Q
    ||||||||||    
T  41649707 ggtaattgtt 41649698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 22938178 - 22938297
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttactt 159  Q
    |||||| | ||||| || ||||||||| |||| | |||||||||||||  || || |||||||||||||  ||||||  |||||||||||||| || |||    
T  22938178 gtttagcacgggaatggtaagttcttttccatgatgggaaagtttaacaagagccatagatttaatagtaatttattcggatggctgagatctattcctt 22938277  T
Q  160 ggtaattgttgtaacttttt 179  Q
    |||||  |||||||| ||||    
T  22938278 ggtaaaggttgtaacctttt 22938297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 25246217 - 25246300
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatgg 143  Q
    ||||||||||||||||  || ||||||||| ||| ||||||||| |||  ||||| ||||| |||| |||||||| || |||||    
T  25246217 gtttagtatgggaaagaaaacttctttcccttcatgggaaagttgaactagaaccatagatataattgttttttaattggatgg 25246300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 2455757 - 2455803
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagtttaa 106  Q
    ||||||||||||||||||||||||||| |||| |  |||||||||||    
T  2455757 gtttagtatgggaaagggaagttcttttccattataggaaagtttaa 2455803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 59 - 187
Target Start/End: Complemental strand, 43790472 - 43790344
Alignment:
Q  59 agtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttact 158  Q
    |||||| ||||| ||||||||||||||||| |||| ||||||||||||||  |||| | |||||||||||||||||||| | ||||| |||||| | |||    
T  43790472 agtttaatatggaaaagggaagttctttcctatcatgggaaagtttaaccacaaccattgatttaatagttttttatttgggtggcttagatctatgact 43790373  T
Q  159 tggtaattgttgtaacttttttatggtta 187  Q
    ||||||||||||||||||||| |||||||    
T  43790372 tggtaattgttgtaactttttgatggtta 43790344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 60 - 193
Target Start/End: Original strand, 13389965 - 13390098
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttactt 159  Q
    |||||| ||| ||| | ||||||||||| ||| | |||||||||||| |  | || |  |||||||||||||||||||  |||||||||||||||||| |    
T  13389965 gtttagcatgagaatgagaagttctttctcatgatgggaaagtttaatcacatccatcaatttaatagttttttatttgaatggctgagatcttttacct 13390064  T
Q  160 ggtaattgttgtaacttttttatggttattgtgt 193  Q
    |||||||||||| | |||||||||||||||||||    
T  13390065 ggtaattgttgtgatttttttatggttattgtgt 13390098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 40746091 - 40745972
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttactt 159  Q
    |||||||||||||||| ||| ||||||||||| | | ||||||||||||  || | | ||||||||||||||||| || ||||||| |||||| | ||||    
T  40746091 gtttagtatgggaaagagaacttctttcccataatgagaaagtttaaccacaatcattgatttaatagttttttaattggatggcttagatctatcactt 40745992  T
Q  160 ggtaattgttgtaacttttt 179  Q
    | |||||||| |||||||||    
T  40745991 gttaattgttataacttttt 40745972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 60 - 150
Target Start/End: Complemental strand, 8164448 - 8164358
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagat 150  Q
    ||||||||||||||| | ||||| |||||||||| || |||||| || |  |||| || |||||||| |||||||||||||||||| ||||    
T  8164448 gtttagtatgggaaaagaaagttttttcccatcatggaaaagttgaatcacaaccatatatttaataattttttatttagatggctaagat 8164358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 41519968 - 41519923
Alignment:
Q  59 agtttagtatgggaaagggaagttctttcccatcacgggaaagttt 104  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||    
T  41519968 agtttagtatgggaaagggaagttttttcccaccatgggaaagttt 41519923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 42951009 - 42950935
Alignment:
Q  59 agtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagtttttt 133  Q
    |||||||||||||||||||||||| ||| || | | | |||||||||||   |||| |||||||||| |||||||    
T  42951009 agtttagtatgggaaagggaagttgttttccttgatgagaaagtttaactacaaccatagatttaatggtttttt 42950935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 40726905 - 40726840
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaat 125  Q
    |||||| ||| |||||| |||||||||| ||| | ||||||||||||||  |||| ||||||||||    
T  40726905 gtttagcatgagaaaggaaagttctttctcatgatgggaaagtttaaccacaaccatagatttaat 40726840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 60 - 193
Target Start/End: Original strand, 72085 - 72218
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttactt 159  Q
    |||||| ||| ||| || ||||||||| |||| | |||||||||||| |  | || |  |||||||||||||||||||  ||||||||||||||||||||    
T  72085 gtttagcatgagaatggaaagttcttttccatgatgggaaagtttaatcacatccatcaatttaatagttttttatttgaatggctgagatcttttactt 72184  T
Q  160 ggtaattgttgtaacttttttatggttattgtgt 193  Q
    |||||||||||| ||||||| |||||||||||||    
T  72185 ggtaattgttgtgactttttgatggttattgtgt 72218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 36846875 - 36846758
Alignment:
Q  70 ggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttacttggtaattgtt 169  Q
    ||||||| ||||| |||||||||| | ||||||||||||  || | | ||||||||||||||||||||  |||||| |||||| | ||||||||||||||    
T  36846875 ggaaaggaaagttttttcccatcatgagaaagtttaaccacaatcattgatttaatagttttttatttgaatggcttagatctatgacttggtaattgtt 36846776  T
Q  170 gtaacttttttatggtta 187  Q
    ||||||||||||||||||    
T  36846775 gtaacttttttatggtta 36846758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 59 - 193
Target Start/End: Original strand, 41886753 - 41886887
Alignment:
Q  59 agtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttact 158  Q
    ||||||| |||| |||||||| ||||||||||| | || ||||||||| |  | || |||||||||||||||||||||| ||||||| |||||||||||     
T  41886753 agtttagcatggaaaagggaaattctttcccataatggaaaagtttaagcatagccatagatttaatagttttttatttggatggcttagatcttttacc 41886852  T
Q  159 tggtaattgttgtaacttttttatggttattgtgt 193  Q
    ||||||  ||||| ||||||| |||| ||||||||    
T  41886853 tggtaagggttgtgactttttgatgggtattgtgt 41886887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 14629823 - 14629943
Alignment:
Q  58 gagtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttac 157  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||| ||||  |||| |||||||||||| ||||||||| ||||||| |||| | | ||    
T  14629823 gagtttagtatgggaaagggaagttcttttccatcatgggaaagttgaaccacaaccatagatttaatag-tttttatttggatggctaagatttgtgac 14629921  T
Q  158 ttggtaattgttgtaacttttt 179  Q
     ||||||| |||| ||||||||    
T  14629922 ctggtaatggttgcaacttttt 14629943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 42250829 - 42250911
Alignment:
Q  53 aggtagagtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttat 135  Q
    |||| |||||||||||||||||| ||||||||||||||| | || ||| |||||||  | || ||||||||||||||||||||    
T  42250829 aggtggagtttagtatgggaaagagaagttctttcccatgatggaaaaatttaaccatagccatagatttaatagttttttat 42250911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 41531661 - 41531545
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttactt 159  Q
    ||||||||| ||||||||||||||||| |||| |  |||||||||||||    || | ||||||||||||||  |||| ||||||| ||||||||||| |    
T  41531661 gtttagtataggaaagggaagttcttttccatgataggaaagtttaaccacgtccatggatttaatagttttaaatttggatggctaagatcttttacct 41531562  T
Q  160 ggtaattgttgtaactt 176  Q
    | |||||| | ||||||    
T  41531561 gctaattgctttaactt 41531545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 24307819 - 24307764
Alignment:
Q  53 aggtagagtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacc 108  Q
    |||| |||||||||||||||||||| |||||||| || ||| ||||||||| ||||    
T  24307819 aggtggagtttagtatgggaaaggggagttcttttccttcatgggaaagttgaacc 24307764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 5064687 - 5064645
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagt 102  Q
    |||||| ||||||| ||||||||||||||||||| ||||||||    
T  5064687 gtttagcatgggaatgggaagttctttcccatcatgggaaagt 5064645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 31276934 - 31276976
Alignment:
Q  61 tttagtatgggaaagggaagttctttcccatcacgggaaagtt 103  Q
    |||||||||||||||| |||||||||||||| | |||||||||    
T  31276934 tttagtatgggaaaggaaagttctttcccatgatgggaaagtt 31276976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 43786219 - 43786101
Alignment:
Q  61 tttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttacttg 160  Q
    ||||||||||||||||||  ||||||||||| | ||||||||||||||  |||| | ||||||||||||||||  || ||||||| |||||| | |||||    
T  43786219 tttagtatgggaaagggagcttctttcccataatgggaaagtttaaccacaaccattgatttaatagttttttgattggatggcttagatctatcacttg 43786120  T
Q  161 gtaattgttgtaacttttt 179  Q
     |||||||| |||||||||    
T  43786119 ttaattgttataacttttt 43786101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 95 - 193
Target Start/End: Complemental strand, 40803617 - 40803520
Alignment:
Q  95 gggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttacttggtaattgttgtaacttttttatggttattgtgt 193  Q
    ||||||||||||||  |||| || ||||||||||||||||||||||||| |||||||| ||||||| | |||||||| || |||| |||||||||||||    
T  40803617 gggaaagtttaaccacaaccataaatttaatagttttttatttagatggttgagatctcttacttgattattgttgtgac-ttttgatggttattgtgt 40803520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 44064198 - 44064285
Alignment:
Q  63 tagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagat 150  Q
    |||||||| |||||||||||||||||||||| ||||||||| ||||  |||| ||||||||||| ||||||||||  |||||| ||||    
T  44064198 tagtatggaaaagggaagttctttcccatcatgggaaagttgaaccacaaccatagatttaatacttttttatttgaatggctaagat 44064285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 145
Target Start/End: Complemental strand, 53714465 - 53714373
Alignment:
Q  53 aggtagagtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggct 145  Q
    |||| |||||||| ||||||||||||| ||||||||||  | ||||||||||||||  |||| ||  | ||||||| |||||||| |||||||    
T  53714465 aggtggagtttagcatgggaaagggaaattctttcccactatgggaaagtttaaccacaaccataattataatagtattttatttggatggct 53714373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 45297555 - 45297599
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagttt 104  Q
    |||||||||||||||||  |||| |||||||||| ||||||||||    
T  45297555 gtttagtatgggaaaggagagttgtttcccatcatgggaaagttt 45297599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 60 - 181
Target Start/End: Complemental strand, 29412925 - 29412804
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttactt 159  Q
    ||||| |||||||| ||||||||||||||||| | | |||||||||| |  | || |  |||||||||||||||||||  |||| |||||||||||||||    
T  29412925 gtttaatatgggaatgggaagttctttcccatgatgagaaagtttaatcacatccatcaatttaatagttttttatttgaatggttgagatcttttactt 29412826  T
Q  160 ggtaattgttgtaactttttta 181  Q
    |||||||||||  |||||||||    
T  29412825 ggtaattgttgcgactttttta 29412804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 4301911 - 4302030
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttactt 159  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||  |||   | || ||||||||||| |||||||||| ||||||| |||||  | || |    
T  4301911 gtttaatatggaaaagggaagttctttcccatcatgggaaagtcgaactaaagccatagatttaatatttttttatttggatggctaagatccatgacct 4302010  T
Q  160 ggtaattgttgtaacttttt 179  Q
    |||||||||| |||||||||    
T  4302011 ggtaattgttctaacttttt 4302030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 192
Target Start/End: Original strand, 3309495 - 3309627
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttactt 159  Q
    |||||| |||||||||||||||||||||| || | ||||||||| ||||  |||| |  |||||||||||||| |||| |||| || ||||| ||||| |    
T  3309495 gtttagcatgggaaagggaagttctttcctatgatgggaaagttcaaccacaaccatgaatttaatagtttttaatttggatgactaagatcatttacct 3309594  T
Q  160 ggtaattgttgtaacttttttatggttattgtg 192  Q
     ||||||| | |||||| || |||| |||||||    
T  3309595 agtaattgctttaacttattgatgggtattgtg 3309627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 26318367 - 26318281
Alignment:
Q  59 agtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggct 145  Q
    |||||||||||||||||| || ||||||||  ||| ||||||||| |||| ||||| ||||| |||| |||||||| || |||||||    
T  26318367 agtttagtatgggaaaggaaacttctttcctttcatgggaaagttaaaccagaaccatagatataattgttttttaattggatggct 26318281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 43458526 - 43458457
Alignment:
Q  317 caaaatgatgaagaagaaaataactctgaatcaagaacaaaaacggtgaagaagtttggtaaagaagatg 386  Q
    |||||||||||| |||||||||||| ||||||||||||||||  |   ||||| ||||||||||||||||    
T  43458526 caaaatgatgaaaaagaaaataactttgaatcaagaacaaaattgaaaaagaactttggtaaagaagatg 43458457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 90
Target Start/End: Original strand, 16689599 - 16689629
Alignment:
Q  60 gtttagtatgggaaagggaagttctttccca 90  Q
    |||||||||||||||||||||||||||||||    
T  16689599 gtttagtatgggaaagggaagttctttccca 16689629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 5747927 - 5747975
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacc 108  Q
    |||||||||||||||| | ||||||||||| ||| ||||||||| ||||    
T  5747927 gtttagtatgggaaagaggagttctttcccttcatgggaaagttgaacc 5747975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 9142054 - 9142094
Alignment:
Q  61 tttagtatgggaaagggaagttctttcccatcacgggaaag 101  Q
    |||||||||||||||||||||| ||||||| || |||||||    
T  9142054 tttagtatgggaaagggaagttgtttcccaccatgggaaag 9142094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 36152996 - 36153115
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttactt 159  Q
    |||||||||||||||| ||| ||||||||||| | | ||||||||||||  || | | ||||||||||||||||| || ||||||| |||||| | ||||    
T  36152996 gtttagtatgggaaagagaacttctttcccataatgagaaagtttaaccacaatcattgatttaatagttttttaattggatggcttagatctatcactt 36153095  T
Q  160 ggtaattgttgtaacttttt 179  Q
    | |||||||| |||||||||    
T  36153096 gttaattgttataacttttt 36153115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 192
Target Start/End: Complemental strand, 44948930 - 44948798
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttactt 159  Q
    ||||||||||||||||| |||||||||||||| | ||||||| | | ||  |||| |||||||| ||||| || |||| |||||||| |||||||||       
T  44948930 gtttagtatgggaaaggaaagttctttcccataatgggaaagctcagccacaaccatagatttattagttcttaatttggatggctgggatcttttatcc 44948831  T
Q  160 ggtaattgttgtaacttttttatggttattgtg 192  Q
    |||||||| | |||||| || |||| |||||||    
T  44948830 ggtaattgctttaacttattgatgggtattgtg 44948798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 184
Target Start/End: Original strand, 51606918 - 51607044
Alignment:
Q  58 gagtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttac 157  Q
    |||||||| ||||| |||| ||||| |||||||| | ||||||||| || | | ||| ||||| || || |||||||||| |||||||||||| | ||||    
T  51606918 gagtttagcatgggcaaggaaagttgtttcccatgatgggaaagttgaagcaggaccatagatatattacttttttattttgatggctgagatttgttac 51607017  T
Q  158 ttggtaattgttgtaacttttttatgg 184  Q
     || ||||||   ||||||||| ||||    
T  51607018 ctgctaattgaattaactttttgatgg 51607044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 46134659 - 46134619
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaa 100  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  46134659 gtttagtatgggaaagggaagttgtttcccatcatgggaaa 46134619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 31768333 - 31768381
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacc 108  Q
    ||||||||||| |||||| ||||||||||| ||| ||||||||| ||||    
T  31768333 gtttagtatggaaaaggggagttctttcccttcatgggaaagttgaacc 31768381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 36385674 - 36385718
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagttt 104  Q
    ||||||||||| ||||||||||| ||| |||||| ||||||||||    
T  36385674 gtttagtatggaaaagggaagttgttttccatcatgggaaagttt 36385718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 42383726 - 42383770
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagttt 104  Q
    |||||||||||||||| |||||| ||||| |||| ||||||||||    
T  42383726 gtttagtatgggaaagagaagttgtttcctatcatgggaaagttt 42383770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 15103 - 15016
Alignment:
Q  58 gagtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggct 145  Q
    |||||||| ||||||| | |||||||||||||| || |||||| |||||||  |||| ||||| ||||||| |||||||| |||||||    
T  15103 gagtttagcatgggaatgagaagttctttcccaccatgggaaaatttaaccacaaccatagatataatagtattttatttggatggct 15016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 60 - 150
Target Start/End: Complemental strand, 31681205 - 31681115
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagat 150  Q
    ||||| ||||||||||| |||||||||||||||| |  |||||| ||||  |||| || ||||| ||||||||||||| ||||||| ||||    
T  31681205 gtttaatatgggaaaggaaagttctttcccatcatgtaaaagttgaaccacaaccataaatttattagttttttatttggatggctaagat 31681115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 31805964 - 31806084
Alignment:
Q  58 gagtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttac 157  Q
    ||||||| ||| ||||||||||||||||| |||||| ||||||||| |||   |||| || ||||||||| ||||||||| ||| ||| |||| | | ||    
T  31805964 gagtttaatataggaaagggaagttcttttccatcatgggaaagttgaactacaaccataaatttaatag-tttttatttggatagctaagatttgtgac 31806062  T
Q  158 ttggtaattgttgtaacttttt 179  Q
     || |||| |||||||||||||    
T  31806063 ctgataatggttgtaacttttt 31806084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 192
Target Start/End: Complemental strand, 43781116 - 43780984
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagttttttatttagatggctgagatcttttactt 159  Q
    |||||| |||||||| ||||||| ||| | || | ||||||||| ||||  |||| | ||||||||||||||| |||| |||| || ||||| ||||| |    
T  43781116 gtttagcatgggaaaaggaagtttttttctatgatgggaaagttcaaccacaaccatggatttaatagtttttaatttggatgactaagatcatttacct 43781017  T
Q  160 ggtaattgttgtaacttttttatggttattgtg 192  Q
    | |||||| | |||||| || |||| |||||||    
T  43781016 gataattgctttaacttattgatgggtattgtg 43780984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 32622042 - 32622108
Alignment:
Q  67 atgggaaagggaagttctttcccatcacgggaaagtttaacctgaaccgtagatttaatagtttttt 133  Q
    |||||||||||| ||||||| | |||| ||||||||| ||||  |||| ||||||||||||||||||    
T  32622042 atgggaaagggacgttcttttctatcatgggaaagttgaaccacaaccatagatttaatagtttttt 32622108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 54006734 - 54006778
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagttt 104  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||    
T  54006734 gtttagtatgggaatgggaagttgtttcccatcatgggaaagttt 54006778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 232091 - 232049
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagt 102  Q
    ||||||||||||||||||||||| ||||||| || ||||||||    
T  232091 gtttagtatgggaaagggaagttgtttcccaccatgggaaagt 232049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 52524002 - 52523962
Alignment:
Q  66 tatgggaaagggaagttctttcccatcacgggaaagtttaa 106  Q
    ||||||||||| |||||||||||||| | ||||||||||||    
T  52524002 tatgggaaaggaaagttctttcccatgatgggaaagtttaa 52523962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 54008496 - 54008452
Alignment:
Q  60 gtttagtatgggaaagggaagttctttcccatcacgggaaagttt 104  Q
    |||||||||||||| |||||||| ||||| |||| ||||||||||    
T  54008496 gtttagtatgggaatgggaagttgtttccaatcatgggaaagttt 54008452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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