View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18121_low_8 (Length: 401)

Name: NF18121_low_8
Description: NF18121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18121_low_8
NF18121_low_8
[»] chr6 (6 HSPs)
chr6 (202-388)||(2769041-2769227)
chr6 (1-109)||(2768840-2768948)
chr6 (250-307)||(9617436-9617493)
chr6 (251-312)||(19040355-19040416)
chr6 (268-312)||(7377999-7378043)
chr6 (268-312)||(33001284-33001328)
[»] chr7 (1 HSPs)
chr7 (239-307)||(7328691-7328759)
[»] scaffold0022 (1 HSPs)
scaffold0022 (241-299)||(99886-99944)
[»] chr5 (2 HSPs)
chr5 (241-299)||(38749571-38749629)
chr5 (268-312)||(15874197-15874241)
[»] chr3 (1 HSPs)
chr3 (268-306)||(48202270-48202308)
[»] chr8 (2 HSPs)
chr8 (268-313)||(13844590-13844635)
chr8 (239-299)||(36934661-36934721)
[»] chr4 (1 HSPs)
chr4 (268-301)||(48433208-48433241)
[»] chr2 (1 HSPs)
chr2 (268-312)||(20922923-20922967)
[»] chr1 (1 HSPs)
chr1 (251-299)||(17425101-17425149)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 7e-99; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 202 - 388
Target Start/End: Original strand, 2769041 - 2769227
Alignment:
Q  202 cagcaatgatgaactgtgaagcattgacatatacaagtaacatgtcgataccggtaattattcgataaaataacataattgaatgtaattatatgtgtct 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2769041 cagcaatgatgaactgtgaagcattgacatatacaagtaacatgtcgataccggtaattattcgataaaataacataattgaatgtaattatatgtgtct 2769140  T
Q  302 gtgtcgcacactaacaagtgtgggacaccgaacatgcttttaatcagaagtgtcagtgttactgagatgggagatgatgaacttact 388  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2769141 gtgtcgcacactaacaagtgtgggacaccgaacatgcttttaattagaagtgtcagtgttactgagatgggagatgatgaacttact 2769227  T

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Target: chr6; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 2768840 - 2768948
Alignment:
Q  1 cctttggagaagaagattgaggaaagtagtcatcagcatcaacatcataaccgtaccgttcaagtaagannnnnnnctcttcactcgccaacccatttcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||       ||||||||||||||||||||||||    
T  2768840 cctttggagaagaagattgaggaaagtagtcatcagcatcaacatcataaccataccgttcaagtaagatttttttctcttcactcgccaacccatttcc 2768939  T
Q  101 tgattctgc 109  Q
    |||||||||    
T  2768940 tgattctgc 2768948  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 9617436 - 9617493
Alignment:
Q  250 taccggtaattattcgataaaataacataattgaatgtaattatatgtgtctgtgtcg 307  Q
    |||||||||| ||| || ||||| |||||||| |||||||||||||||||| ||||||    
T  9617436 taccggtaataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcg 9617493  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 19040355 - 19040416
Alignment:
Q  251 accggtaattattcgataaaataacataattgaatgtaattatatgtgtctgtgtcgcacac 312  Q
    |||| |||| ||| || ||||| |||||||| | ||||||||||||||||||||||| ||||    
T  19040355 accgctaataatttgagaaaatcacataattcagtgtaattatatgtgtctgtgtcggacac 19040416  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 7377999 - 7378043
Alignment:
Q  268 aaaataacataattgaatgtaattatatgtgtctgtgtcgcacac 312  Q
    ||||| |||||||| |||||||||||||||||| |||||| ||||    
T  7377999 aaaatcacataattcaatgtaattatatgtgtcggtgtcggacac 7378043  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 33001328 - 33001284
Alignment:
Q  268 aaaataacataattgaatgtaattatatgtgtctgtgtcgcacac 312  Q
    ||||| |||||||| |||||||||||||||||| |||||| ||||    
T  33001328 aaaatcacataattaaatgtaattatatgtgtcggtgtcggacac 33001284  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 7328759 - 7328691
Alignment:
Q  239 taacatgtcgataccggtaattattcgataaaataacataattgaatgtaattatatgtgtctgtgtcg 307  Q
    ||||| |||||||| | |||| ||| || |||||||||||||| | |||||||||||||||| ||||||    
T  7328759 taacacgtcgatactgctaataatttgagaaaataacataatttagtgtaattatatgtgtcggtgtcg 7328691  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 99886 - 99944
Alignment:
Q  241 acatgtcgataccggtaattattcgataaaataacataattgaatgtaattatatgtgt 299  Q
    ||||||||| |||| |||| |||  | |||||||||||||| |||||||||||||||||    
T  99886 acatgtcgacaccgataataattttagaaaataacataattcaatgtaattatatgtgt 99944  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 38749629 - 38749571
Alignment:
Q  241 acatgtcgataccggtaattattcgataaaataacataattgaatgtaattatatgtgt 299  Q
    ||||||||| |||| |||| ||| || ||||| |||||||| |||||||||||||||||    
T  38749629 acatgtcgacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgt 38749571  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 15874241 - 15874197
Alignment:
Q  268 aaaataacataattgaatgtaattatatgtgtctgtgtcgcacac 312  Q
    ||||||| || |||||||||||||||||||||| |||||| ||||    
T  15874241 aaaataaaatgattgaatgtaattatatgtgtcggtgtcgaacac 15874197  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 306
Target Start/End: Complemental strand, 48202308 - 48202270
Alignment:
Q  268 aaaataacataattgaatgtaattatatgtgtctgtgtc 306  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  48202308 aaaatcacataatttaatgtaattatatgtgtctgtgtc 48202270  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 13844635 - 13844590
Alignment:
Q  268 aaaataacataattgaatgtaattatatgtgtctgtgtcgcacact 313  Q
    ||||| |||||||||| |||||||||||||||| |||||| |||||    
T  13844635 aaaatcacataattgagtgtaattatatgtgtcggtgtcggacact 13844590  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 36934661 - 36934721
Alignment:
Q  239 taacatgtcgataccggtaattattcgataaaataacataattgaatgtaattatatgtgt 299  Q
    ||||| ||||| |||| |||| |||||| ||||| |||||||| | |||||||||||||||    
T  36934661 taacacgtcgacaccgctaataattcgaaaaaatcacataattcattgtaattatatgtgt 36934721  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 48433241 - 48433208
Alignment:
Q  268 aaaataacataattgaatgtaattatatgtgtct 301  Q
    ||||||||||||||||||||||||| ||||||||    
T  48433241 aaaataacataattgaatgtaattacatgtgtct 48433208  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 20922967 - 20922923
Alignment:
Q  268 aaaataacataattgaatgtaattatatgtgtctgtgtcgcacac 312  Q
    ||||| |||||||| | ||||||||||||||||||||||| ||||    
T  20922967 aaaatcacataatttagtgtaattatatgtgtctgtgtcggacac 20922923  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 17425149 - 17425101
Alignment:
Q  251 accggtaattattcgataaaataacataattgaatgtaattatatgtgt 299  Q
    |||| |||| ||| |||||||| |||||||| |||||||||||||||||    
T  17425149 accgataataatttgataaaatcacataattcaatgtaattatatgtgt 17425101  T

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