View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18121_low_9 (Length: 397)
Name: NF18121_low_9
Description: NF18121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18121_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 31150437 - 31150626
Alignment:
| Q |
8 |
ggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacc |
107 |
Q |
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| T |
31150437 |
ggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacc |
31150536 |
T |
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| Q |
108 |
caacatatttacaatctcttcaacgatcttttcaatctctgcatgttgtggcctgcaagttttattctgttatttaacaacaccaaatca |
197 |
Q |
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| T |
31150537 |
caacatatttacaatctcttcaacgatcttttcaatctctgcatgttgtggcctgcaagttttattctgttatttaacaacaccaaatca |
31150626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 270 - 383
Target Start/End: Original strand, 31150704 - 31150817
Alignment:
| Q |
270 |
ctctcttttgattaattaatatagtttctcgaggacgtcgtgatcaattactaaatttatgtgtcaaagcaaagctttaaaatttgcacatgtaagtgca |
369 |
Q |
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| T |
31150704 |
ctctcttttgattaattaatatagtttctcgaggacgtcgtgatcaattactaaatttatgtgtcaaagcaaagctttaaaatttgcacatgtaagtgca |
31150803 |
T |
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| Q |
370 |
tcaataaggaagat |
383 |
Q |
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| T |
31150804 |
tcaataaggaagat |
31150817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 31161733 - 31161868
Alignment:
| Q |
10 |
acatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaaccca |
109 |
Q |
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| T |
31161733 |
acatcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaatccatcccagctaaataatttggaagacttgtagacttgtaaccca |
31161832 |
T |
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| Q |
110 |
acatatttacaatctcttcaacgatcttttcaatct |
145 |
Q |
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| T |
31161833 |
gtatattcataatttcttcgacgatcttttcaatct |
31161868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 31034102 - 31034207
Alignment:
| Q |
39 |
tttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacccaacatatttacaatctcttcaacgatcttt |
138 |
Q |
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| T |
31034102 |
tttttctaattcttctataagagaatcaatcccaactaaatcttttggaagacttgaaaaccggtaacccaatctatttattatctcttcaacaatcttt |
31034201 |
T |
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| Q |
139 |
tcaatc |
144 |
Q |
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|||||| |
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| T |
31034202 |
tcaatc |
31034207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 31159451 - 31159501
Alignment:
| Q |
121 |
atctcttcaacgatcttttcaatctctgcatgttgtggcctgcaagtttta |
171 |
Q |
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| T |
31159451 |
atctcttcaacaatcttttcaatctctgcatattgaggcctgaaagtttta |
31159501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 31476951 - 31476882
Alignment:
| Q |
10 |
acatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaat |
79 |
Q |
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| T |
31476951 |
acatcatcaacagagtccaaaagtaaaagcttttctaattcttgtctaggagaatccatcccaactaaat |
31476882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 31528549 - 31528639
Alignment:
| Q |
59 |
gagaatgcatcccgactaaattttttggaagattagaaaacttgtaacccaacatatttacaatctcttcaacgatcttttcaatctctgc |
149 |
Q |
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| T |
31528549 |
gagaatgcgtcccaactaaatcatttggaaggcttgaaaatttgcaattcaatatatttactatctcttcaacaatctttttaatctctgc |
31528639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 376
Target Start/End: Original strand, 12781883 - 12781920
Alignment:
| Q |
339 |
caaagctttaaaatttgcacatgtaagtgcatcaataa |
376 |
Q |
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| T |
12781883 |
caaagctttaaaatttgcacaagtaattgcatcaataa |
12781920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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