View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18122_high_13 (Length: 252)
Name: NF18122_high_13
Description: NF18122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18122_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 386624 - 386403
Alignment:
| Q |
15 |
ctgtgaagtaattgtttttaaaaaagccttgtgaggattttccacaagttcgttgtattcttgagttcctatttcaggcatgagtcggcgtacggctttc |
114 |
Q |
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| T |
386624 |
ctgtgaagtaattgtttttaaaaaagccttgtgaggattttcctcaagttcgttgtattcttgagttcctatttcaggcatgagtcggcgtacggctttc |
386525 |
T |
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| Q |
115 |
tttttaatttgaatctttgacacttttggacagataattgttgttgttgaatcttcttgagaaatcttcaaggtggaactttttccaagttttgattatt |
214 |
Q |
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| T |
386524 |
tttttaatttgaatctttgacacttttggacagataattattgttgttgaatcttcttgagaaatcttcaa-gtggaactttttacaagttttgattatt |
386426 |
T |
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| Q |
215 |
tgaatacttcgagcgaggatagt |
237 |
Q |
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| T |
386425 |
tgaatacttcgagcgaggatagt |
386403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 36926533 - 36926447
Alignment:
| Q |
15 |
ctgtgaagtaattgtttttaaaaaagccttgtgaggattttccacaagttcgttgtattcttgagttcctatttcaggcatgagtcg |
101 |
Q |
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||||||||| |||||||| | |||||| |||| ||||||||||| |||||| ||||| |||||||||||| |||||||||||||||| |
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| T |
36926533 |
ctgtgaagtgattgttttcagaaaagctttgtcaggattttccaaaagttcattgtactcttgagttcctttttcaggcatgagtcg |
36926447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 49608273 - 49608358
Alignment:
| Q |
15 |
ctgtgaagtaattgtttttaaaaaagccttgtgaggattttccacaagttcgttgtattcttgagttcctatttcaggcatgagtc |
100 |
Q |
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||||||||||||||| || ||||||| ||||| ||||||||||||||||| |||||||||||||| | | ||||||||||||||| |
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| T |
49608273 |
ctgtgaagtaattgtcttcaaaaaaggcttgtcaggattttccacaagttgattgtattcttgagtccttttttcaggcatgagtc |
49608358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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