View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18122_high_6 (Length: 449)
Name: NF18122_high_6
Description: NF18122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18122_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 12 - 416
Target Start/End: Complemental strand, 30509651 - 30509247
Alignment:
| Q |
12 |
atgaattcaaagcacattggaagagcacaagggttgtttggtcaagcttctctgcatgatattggaatgtttatgttgacaaattttattttcacagatg |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30509651 |
atgagttcaaagcacattggaagagcacaagggttgtttggtcaagcttctctgcatgatattggaatgtttatgttgacaaattttattttcacagatg |
30509552 |
T |
|
| Q |
112 |
gaaactatgcagggagcacacttagcatgttagggaggaatcctgttgctgaacaaaatagagaaatgccaatagttggggggactggactgttcaggtt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30509551 |
gaaactatgcagggagcacacttagcatgttagggaggaatcctgttgctgaacaaaatagagaaatgccaatagttggtgggactggactgttcaggtt |
30509452 |
T |
|
| Q |
212 |
tgctaggggatatgtcatagcaaacagtgtttactctatttcttcccctgagaattttgttatggagtacaatatcacagtgtatcatcgtctttaaatt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30509451 |
tgctaggggatatgtcatagcaaacagtgtttactctatttcttcccctgagaattttgttatggagtacaatatcacagtgtatcatcatctttaaatt |
30509352 |
T |
|
| Q |
312 |
atgccctttgttgtgtgagtttgaataagtgctttaaaatttggactacttgtaatcgttggtgtagtagtaaaataattatgtttgctatttttatgat |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30509351 |
atgccctttgttgtgtgagtttgaataagtgctttaaaatttggactacttgtaatcgttggtgtagcagtaaaataattatgtttgctatttttatgat |
30509252 |
T |
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| Q |
412 |
gtttt |
416 |
Q |
| |
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||||| |
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| T |
30509251 |
gtttt |
30509247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 12 - 422
Target Start/End: Original strand, 10970956 - 10971366
Alignment:
| Q |
12 |
atgaattcaaagcacattggaagagcacaagggttgtttggtcaagcttctctgcatgatattggaatgtttatgttgacaaattttattttcacagatg |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
10970956 |
atgagttcaaagcacattggaagagcacaagggttgtttggtcaagcttctctgcatgatattggaatgtttatgttgacaaattttattttcacagagg |
10971055 |
T |
|
| Q |
112 |
gaaactatgcagggagcacacttagcatgttagggaggaatcctgttgctgaacaaaatagagaaatgccaatagttggggggactggactgttcaggtt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
10971056 |
gaaactatgcagggagcacacttagcatgttagggaggaatcctgttgctgaacaaaatagagaaatggcaatagttggtgggactggactgttcaggtt |
10971155 |
T |
|
| Q |
212 |
tgctaggggatatgtcatagcaaacagtgtttactctatttcttcccctgagaattttgttatggagtacaatatcacagtgtatcatcgtctttaaatt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10971156 |
tgctaggggatatgtcatagcaaacagtgtttactctatttcttcccctgagaattttgttatggagtacaatatcacagtgtatcatcatctttaaatt |
10971255 |
T |
|
| Q |
312 |
atgccctttgttgtgtgagtttgaataagtgctttaaaatttggactacttgtaatcgttggtgtagtagtaaaataattatgtttgctatttttatgat |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10971256 |
atgccctttgttgtgtgagtttgaataagtgctttaaaatttggactacttgtaatctttggtgtagtagtaaaataattatgtttgctatttttatgat |
10971355 |
T |
|
| Q |
412 |
gttttaatgag |
422 |
Q |
| |
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||||||||||| |
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|
| T |
10971356 |
gttttaatgag |
10971366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 13703005 - 13702944
Alignment:
| Q |
138 |
atgttagggaggaatcctgttgctgaacaaaatagagaaatgccaatagttggggggactgg |
199 |
Q |
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||||| || ||||||||| || |||||||||||||||||||||| || ||||| || ||||| |
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| T |
13703005 |
atgttgggaaggaatcctatttctgaacaaaatagagaaatgcctattgttggtggaactgg |
13702944 |
T |
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