View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18122_high_9 (Length: 413)

Name: NF18122_high_9
Description: NF18122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18122_high_9
NF18122_high_9
[»] chr4 (6 HSPs)
chr4 (1-413)||(4124234-4124646)
chr4 (336-413)||(4320914-4320991)
chr4 (354-413)||(4335071-4335131)
chr4 (18-118)||(4360050-4360150)
chr4 (358-413)||(4344377-4344432)
chr4 (358-413)||(4360808-4360863)
[»] chr6 (16 HSPs)
chr6 (351-413)||(5284684-5284746)
chr6 (351-413)||(5354909-5354971)
chr6 (357-413)||(5257629-5257685)
chr6 (351-413)||(5182222-5182284)
chr6 (351-413)||(5396674-5396736)
chr6 (358-413)||(5176470-5176525)
chr6 (358-413)||(5278297-5278352)
chr6 (351-413)||(5344585-5344647)
chr6 (367-413)||(5433775-5433821)
chr6 (367-413)||(5128712-5128758)
chr6 (367-409)||(5446897-5446939)
chr6 (367-412)||(5147192-5147237)
chr6 (351-412)||(5690455-5690516)
chr6 (365-409)||(5066993-5067037)
chr6 (365-413)||(5096446-5096494)
chr6 (365-413)||(5102909-5102957)
[»] chr7 (1 HSPs)
chr7 (351-413)||(36214124-36214186)
[»] chr5 (1 HSPs)
chr5 (351-409)||(8877333-8877391)
[»] scaffold0294 (1 HSPs)
scaffold0294 (356-413)||(9195-9252)


Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 4124646 - 4124234
Alignment:
Q  1 agttgaaaactatgaatagttcgattataatacaaaagatccatcatagccctaactatgaatttagttacaatgtatacaagtacaaacaaaattcaca 100  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4124646 agttgaaaactatgaataatttgattataatacaaaagatccatcatagccctaactatgaatttagttacaatgtatataagtacaaacaaaattcaca 4124547  T
Q  101 catcagtccataaatcaacacagtaaataaaagaaaccagaggaatttcaaacctatctattatgctgaattttaaaattcacagcagaatgctggcacc 200  Q
     | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4124546 taacagtccataaatcaacacagtaaataaaagaaaccagaggaatttcaaacctatctattatgctgaattttaaaattcacagcagaatgctggcacc 4124447  T
Q  201 cgaatattttgagcaaaaagtaatactaaaccaacgtatgttggtattnnnnnnntggctatgcacccacacaaatattttattaccactctcaaggttg 300  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||||    
T  4124446 cgaatattttgagcaaaaagtaatactaaactaacgtatgttggtattaaaaaaatggctatgcactcacacaaatattttattaccactctcaaggttg 4124347  T
Q  301 gtgacacgtcgtacgtgcttgtacttatctttttatgctttatccgcaagttctctataatatttctgttcttgcagagaatggagcagctgaaaattct 400  Q
    | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4124346 gcgacacgtcgtacgtgcttgtacttctctttttatgctttatccgcaagttctctataatatttctgttcttgcagagaatggagcagctgaaaattct 4124247  T
Q  401 caatcttagtcat 413  Q
    |||||||||||||    
T  4124246 caatcttagtcat 4124234  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 336 - 413
Target Start/End: Complemental strand, 4320991 - 4320914
Alignment:
Q  336 tgctttatccgcaagttctctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcat 413  Q
    ||||||||||| || ||||||||||||||| | || |||||||| |||||||||||||| ||||| ||||||||||||    
T  4320991 tgctttatccgtaacttctctataatatttttatttttgcagaggatggagcagctgaagattctaaatcttagtcat 4320914  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 4335071 - 4335131
Alignment:
Q  354 tctataatatttctgtt-cttgcagagaatggagcagctgaaaattctcaatcttagtcat 413  Q
    ||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  4335071 tctataatatttctgtttcttgcagaggatggagcagttgaaaattctcaatcttagtcat 4335131  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 4360050 - 4360150
Alignment:
Q  18 agttcgattataatacaaaagatccatcatagccctaactatgaatttagttacaatgtatacaagtacaaacaaaattcacacatcagtccataaatca 117  Q
    |||| ||||||| |||| ||||||||||||| ||||||| ||||||||  ||||||||||||  |||| ||||||||| |||| |  ||| |||||||||    
T  4360050 agtttgattatattacataagatccatcataaccctaacaatgaatttgtttacaatgtataatagtataaacaaaatccacatagtagtacataaatca 4360149  T
Q  118 a 118  Q
    |    
T  4360150 a 4360150  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 413
Target Start/End: Original strand, 4344377 - 4344432
Alignment:
Q  358 taatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcat 413  Q
    ||||||||| |||||||||||| ||||| |||||||||||||||||||| ||||||    
T  4344377 taatatttccgttcttgcagaggatggatcagctgaaaattctcaatctcagtcat 4344432  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 413
Target Start/End: Original strand, 4360808 - 4360863
Alignment:
Q  358 taatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcat 413  Q
    |||||||| |||| || ||| | |||||||||||||||||||||||||||||||||    
T  4360808 taatatttatgttatttcaggggatggagcagctgaaaattctcaatcttagtcat 4360863  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 413
Target Start/End: Complemental strand, 5284746 - 5284684
Alignment:
Q  351 ttctctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcat 413  Q
    ||||| ||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||    
T  5284746 ttctcaataatatttatgttcttgcagaggatggagaagctgaaaattctcaatcttagtcat 5284684  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 413
Target Start/End: Complemental strand, 5354971 - 5354909
Alignment:
Q  351 ttctctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcat 413  Q
    |||||| |||||| | |||||||||||||||||||||| ||||||||||||||||||||||||    
T  5354971 ttctctttaatatgtatgttcttgcagagaatggagcatctgaaaattctcaatcttagtcat 5354909  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 5257685 - 5257629
Alignment:
Q  357 ataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcat 413  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||    
T  5257685 ataatatttatgttcttgcagaggatggagaagctgaaaattctcaatcttagtcat 5257629  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 413
Target Start/End: Complemental strand, 5182284 - 5182222
Alignment:
Q  351 ttctctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcat 413  Q
    |||| ||||| ||||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  5182284 ttctttataacatttctgttcttgcagaggctggagaagctgaaaattctcaatcttagtcat 5182222  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 413
Target Start/End: Original strand, 5396674 - 5396736
Alignment:
Q  351 ttctctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcat 413  Q
    |||| |||||||||| |||||||||||||  ||||| ||||||||||||||||||||||||||    
T  5396674 ttctttataatatttatgttcttgcagaggctggagaagctgaaaattctcaatcttagtcat 5396736  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 413
Target Start/End: Original strand, 5176470 - 5176525
Alignment:
Q  358 taatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcat 413  Q
    |||||||| ||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  5176470 taatatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcat 5176525  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 413
Target Start/End: Original strand, 5278297 - 5278352
Alignment:
Q  358 taatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcat 413  Q
    |||||||| ||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  5278297 taatatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcat 5278352  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 413
Target Start/End: Original strand, 5344585 - 5344647
Alignment:
Q  351 ttctctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcat 413  Q
    ||||||| || |||| ||||||| ||||  |||||| ||||||||||||||||||||||||||    
T  5344585 ttctctacaacatttatgttcttacagatgatggagaagctgaaaattctcaatcttagtcat 5344647  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 367 - 413
Target Start/End: Original strand, 5433775 - 5433821
Alignment:
Q  367 tgttcttgcagagaatggagcagctgaaaattctcaatcttagtcat 413  Q
    |||||||||||||||||||| ||||||||||||| || |||||||||    
T  5433775 tgttcttgcagagaatggagaagctgaaaattcttaaccttagtcat 5433821  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 413
Target Start/End: Complemental strand, 5128758 - 5128712
Alignment:
Q  367 tgttcttgcagagaatggagcagctgaaaattctcaatcttagtcat 413  Q
    ||||||||||||  |||||| |||||||||||||||||| |||||||    
T  5128758 tgttcttgcagatgatggagaagctgaaaattctcaatcatagtcat 5128712  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 409
Target Start/End: Original strand, 5446897 - 5446939
Alignment:
Q  367 tgttcttgcagagaatggagcagctgaaaattctcaatcttag 409  Q
    ||||||||||||| |||||| |||| |||||||||||||||||    
T  5446897 tgttcttgcagaggatggagaagctaaaaattctcaatcttag 5446939  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 412
Target Start/End: Complemental strand, 5147237 - 5147192
Alignment:
Q  367 tgttcttgcagagaatggagcagctgaaaattctcaatcttagtca 412  Q
    ||||||||||||| |||||| |||| ||||||||||| ||||||||    
T  5147237 tgttcttgcagaggatggagaagctaaaaattctcaagcttagtca 5147192  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 412
Target Start/End: Complemental strand, 5690516 - 5690455
Alignment:
Q  351 ttctctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtca 412  Q
    |||||| |||||||| | |||||| |||  |||||| |||| ||||||||||||||||||||    
T  5690516 ttctctttaatatttatattcttgtagatgatggagaagcttaaaattctcaatcttagtca 5690455  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 5067037 - 5066993
Alignment:
Q  365 tctgttcttgcagagaatggagcagctgaaaattctcaatcttag 409  Q
    ||||||||||||||| |||||  ||||||||||||| ||||||||    
T  5067037 tctgttcttgcagaggatggaaaagctgaaaattctaaatcttag 5066993  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 413
Target Start/End: Original strand, 5096446 - 5096494
Alignment:
Q  365 tctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcat 413  Q
    ||||||||||||||| |||||  | ||||||||||| ||||||||||||    
T  5096446 tctgttcttgcagaggatggaaaaactgaaaattctaaatcttagtcat 5096494  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 413
Target Start/End: Complemental strand, 5102957 - 5102909
Alignment:
Q  365 tctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcat 413  Q
    |||||||||||||||  ||||  ||||||||||||| ||||||||||||    
T  5102957 tctgttcttgcagaggttggaaaagctgaaaattctaaatcttagtcat 5102909  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 351 - 413
Target Start/End: Complemental strand, 36214186 - 36214124
Alignment:
Q  351 ttctctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcat 413  Q
    |||| ||||| ||||||||||||||||||  ||||  ||||||||||||||||||||||||||    
T  36214186 ttctttataacatttctgttcttgcagaggctggaaaagctgaaaattctcaatcttagtcat 36214124  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 409
Target Start/End: Original strand, 8877333 - 8877391
Alignment:
Q  351 ttctctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttag 409  Q
    |||||||| | |||| ||||||||||||| |||||| |||| |||||||||||||||||    
T  8877333 ttctctatcaaatttatgttcttgcagaggatggagaagctaaaaattctcaatcttag 8877391  T

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Target: scaffold0294 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 413
Target Start/End: Complemental strand, 9252 - 9195
Alignment:
Q  356 tataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcat 413  Q
    |||||||||| || ||||||||||  ||| | ||||||||||||||||||||||||||    
T  9252 tataatatttatggtcttgcagaggctggcgaagctgaaaattctcaatcttagtcat 9195  T

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