View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18122_low_1 (Length: 639)
Name: NF18122_low_1
Description: NF18122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18122_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 14 - 347
Target Start/End: Original strand, 30137519 - 30137852
Alignment:
| Q |
14 |
aacaaaggcagctccaaaagatgttttaatttgcccaggaaccactgaagcaactgtgaaacccaaacacaacccagcagctctaatccaaccataccaa |
113 |
Q |
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| T |
30137519 |
aacaaaagcagctccaaaagatgttttaatttgcccaggaaccactgaagcaactgtgaaacccaaacacaacccagcagctctaatccaaccataccaa |
30137618 |
T |
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| Q |
114 |
acacagaaaacaccttctttcccattaggtgcacattccaaaatcaaaactcttccaaatgcatgcaaaagtccacttccaatgctttgaacccctccaa |
213 |
Q |
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| T |
30137619 |
acacagaaaacaccttctttcccattaggagcacattccaaaatcaaaactcttccaaatgcatgcaaaagtccacttccaatgctttgaacccctccaa |
30137718 |
T |
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| Q |
214 |
atatcaatatatgacccaatttccaatgactattccaaaaatagaatccaaaaccagaagataacattgatagaagaaaaccaatgattttcattttggc |
313 |
Q |
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| T |
30137719 |
atatcaatatatgacccaatttccaatgactattccaaaaatagaatccaaaaccagaagataacattgatagaagaaaaccaatgattttcattttggc |
30137818 |
T |
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| Q |
314 |
agaatttgccttaagtaatagctgcaatgggtgc |
347 |
Q |
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| T |
30137819 |
agaatttgccttaagtaatagctgcaatgggtgc |
30137852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 401 - 623
Target Start/End: Original strand, 30137906 - 30138128
Alignment:
| Q |
401 |
caagtgtggtggcctaatgcaaaggttaccaactatgaaaagcacaccaccaatgaaaatacacattgtggtaaatgatgagaggaaaaccccaaaaagt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30137906 |
caagtgtggtggcctaatgcaaaggttaccaactatgaaaagcacaccaccaatgaaaatacacattgtggtaaatgatgagaggaaaaccccaaaaagt |
30138005 |
T |
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| Q |
501 |
cctccaattgcttttggatgtttaagtagagaacaagggtaaaacatggacttgttaatcaaagaaactgaagaaacagttgttctgttaatagctgtaa |
600 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30138006 |
cctccaattgcttttggatgtttgagtagagaacaagggtaaaacatggatttgttaatcaaagaaactgaagaaacagttgttctgttaatagctgtaa |
30138105 |
T |
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| Q |
601 |
cgacatgtaaaacaccaactaac |
623 |
Q |
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| T |
30138106 |
cgacatgtaaaacaccaactaac |
30138128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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