View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18122_low_13 (Length: 277)

Name: NF18122_low_13
Description: NF18122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18122_low_13
NF18122_low_13
[»] chr6 (9 HSPs)
chr6 (4-64)||(11128342-11128402)
chr6 (10-64)||(11143544-11143598)
chr6 (4-64)||(11124011-11124071)
chr6 (63-179)||(11143391-11143523)
chr6 (64-110)||(11114226-11114272)
chr6 (221-267)||(11143182-11143228)
chr6 (64-193)||(11123862-11123990)
chr6 (4-60)||(11114299-11114359)
chr6 (134-219)||(11114107-11114193)


Alignment Details
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 11128402 - 11128342
Alignment:
Q  4 atgaagtctttggtgaaaacatatatttgtttgtcttctttgttatatgtttctcaattgt 64  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||    
T  11128402 atgaagtctttggtgaagacatatatttgtttgccttctttgttatatttttctcaattgt 11128342  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 11143598 - 11143544
Alignment:
Q  10 tctttggtgaaaacatatatttgtttgtcttctttgttatatgtttctcaattgt 64  Q
    ||||||||||||||||||||||||||  |||||||||||||| ||||||||||||    
T  11143598 tctttggtgaaaacatatatttgttttccttctttgttatatttttctcaattgt 11143544  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 11124071 - 11124011
Alignment:
Q  4 atgaagtctttggtgaaaacatatatttgtttgtcttctttgttatatgtttctcaattgt 64  Q
    ||||||||||||||||| || |||||||||||| |||||||||||||| ||||| ||||||    
T  11124071 atgaagtctttggtgaagacgtatatttgtttgccttctttgttatatttttctgaattgt 11124011  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 11143523 - 11143391
Alignment:
Q  63 gtaaatctttaaacaagtgtgatttccttgattaaatattgtattgtaa----------ttgagcagtaaattcacatttacatagatgtcatggatata 152  Q
    |||||||||||||||||||||||||  ||||||||||||| ||||||||          | || |||||||||||||||||||||||||||| | |||||    
T  11143523 gtaaatctttaaacaagtgtgatttttttgattaaatattatattgtaagtctgaattttggaccagtaaattcacatttacatagatgtcaggtatata 11143424  T
Q  153 ------acattcttgtaatatttctataaattt 179  Q
          | || ||||||||||||||||||||||    
T  11143423 tataacatatccttgtaatatttctataaattt 11143391  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 11114272 - 11114226
Alignment:
Q  64 taaatctttaaacaagtgtgatttccttgattaaatattgtattgta 110  Q
    ||||||||||||| ||||||||||| ||||||||||||| |||||||    
T  11114272 taaatctttaaacgagtgtgatttctttgattaaatattatattgta 11114226  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 11143228 - 11143182
Alignment:
Q  221 acaatataagtttcactcatcactttgagtcgaatgagaagaaatga 267  Q
    ||||| |||||||| || |||||||||||||||||||||||||||||    
T  11143228 acaatttaagtttcgctaatcactttgagtcgaatgagaagaaatga 11143182  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 193
Target Start/End: Complemental strand, 11123990 - 11123862
Alignment:
Q  64 taaatctttaaacaagtgtgatttccttgattaaatattgtattgtaattgagcagtaaattcacatttacatagatgtcatggatataacattcttgta 163  Q
    ||||||||||||| ||||||||||| ||||||||||||| ||||| |    | | |||||||  ||||| ||||||||| | | ||| ||||| | | |     
T  11123990 taaatctttaaacgagtgtgatttctttgattaaatattatattgcagcgcatccgtaaatttccatttccatagatgttaggcatacaacatccat-tt 11123892  T
Q  164 atatttctataaattttaagtatctggtga 193  Q
      ||||||||||||||||||||||||||||    
T  11123891 ccatttctataaattttaagtatctggtga 11123862  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 11114359 - 11114299
Alignment:
Q  4 atgaagtctttggtgaaaacatatatttgtttg----tcttctttgttatatgtttctcaa 60  Q
    ||||||||||||||||| |||||||||||||||     |||||||||||||| ||||||||    
T  11114359 atgaagtctttggtgaagacatatatttgtttgcctagcttctttgttatatttttctcaa 11114299  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 11114193 - 11114107
Alignment:
Q  134 catagatgtcatggatataacattcttgtaatatttctataaattttaagtatct-ggtgatgttcatatgatccgaatgattgact 219  Q
    |||||||||||  || | ||||| ||||||||||||||||| |||| |||||| | ||||||||| ||  ||||| |||||||||||    
T  11114193 catagatgtcagagaaacaacatccttgtaatatttctatagatttgaagtatttgggtgatgtttattagatcccaatgattgact 11114107  T

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