View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18122_low_2 (Length: 575)
Name: NF18122_low_2
Description: NF18122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18122_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 19 - 562
Target Start/End: Complemental strand, 53499737 - 53499194
Alignment:
| Q |
19 |
agcacggagattggtcatctcttatattgtttttcaaaatactctaaactgttattgtttcaggctcttgagatattggaattatataggtgtatatacg |
118 |
Q |
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| T |
53499737 |
agcacggagattggtcaactcttatattgtttttcaaaatactctaaactgttattgtttcaggctcttgagatattggaattatataggcgtatatacg |
53499638 |
T |
|
| Q |
119 |
aagagtatttggccgttcctgtcataaagggtacaaaaagtgaaatggagacatttggcggtgcaatttacaccaacactgttgaggtacatgtcagcat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
53499637 |
aagagtatttggccgttcctgtcataaagggtacaaaaagtgaaatggagacatttggcggtgcaatttacaccaacactgttgaggtacatgtcaacat |
53499538 |
T |
|
| Q |
219 |
tcatatgtggacactgatttgctgttcgaatggtacaaatttagaaggtttataaagaaaaaataatcatgttcagttttcctaggcatttattccaaac |
318 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53499537 |
tcatgtgtggacactgatatgctgttcgaatggtacaaatttagaaggtttataaagaaaaaataatcatgttcagttttcctaggcatttattccaaac |
53499438 |
T |
|
| Q |
319 |
actggttgtgggatacaaggtgcaactacccattgcttgggacaaaagtttgctgaaaagttcgaggtaaactttgaagataagaagggagagaaagcaa |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
53499437 |
actggttgtgggatacaaggtgcaactacccattgcttgggacaaaagtttgctgaaaagttcgaggtaaaatttgaagataagaagggagagaaagcaa |
53499338 |
T |
|
| Q |
419 |
tggtatggcagaactcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaagaactccttttatgtacgattgcatt |
518 |
Q |
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| T |
53499337 |
tggtttggcagaactcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaagaactccttttatgtacgattgcatt |
53499238 |
T |
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| Q |
519 |
tatgttttagtccgcttatttaacagattggagcaatgatgatg |
562 |
Q |
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| T |
53499237 |
tatattttagtccgcttatttaacagattggagcaatggtgatg |
53499194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 288 - 562
Target Start/End: Complemental strand, 53491875 - 53491601
Alignment:
| Q |
288 |
tgttcagttttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgcttgggacaaaagtttgctgaaaagttcgaggta |
387 |
Q |
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| T |
53491875 |
tgttcaattttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggta |
53491776 |
T |
|
| Q |
388 |
aactttgaagataagaagggagagaaagcaatggtatggcagaactcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaa |
487 |
Q |
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| T |
53491775 |
aaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaa |
53491676 |
T |
|
| Q |
488 |
tggaagaactccttttatgtacgattgcatttatgttttagtccgcttatttaacagattggagcaatgatgatg |
562 |
Q |
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|||||| | |||| |||||||||||||||||||| |||| |||||||| |||||||||||||||| ||| ||||| |
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| T |
53491675 |
tggaaggattcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtgatg |
53491601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 48 - 474
Target Start/End: Complemental strand, 16070806 - 16070390
Alignment:
| Q |
48 |
tttttcaaaatactctaaactgttattgtttcaggctcttgagatattggaattatataggtgtatatacgaagagtatttggccgttcctgtcataaag |
147 |
Q |
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|||||||||||||||| | |||| || ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
16070806 |
tttttcaaaatactctggattgttgtt-tttcaggctctcgagatattggaattatataggcgtatatacgaagagtatttggcagttcctgtcataaag |
16070708 |
T |
|
| Q |
148 |
ggtacaaaaagtgaaatggagacatttggcggtgcaatttacaccaacactgttgaggtacatgtcagcattcatatgtggacactgatttgctgttcga |
247 |
Q |
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||||| ||||||| | ||| || | |||||||||||||| |||||| ||||||||||| |||||| |||| |||| ||| ||||| || |||| || |
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| T |
16070707 |
ggtacgaaaagtgtaggggatacttgtggcggtgcaattttcaccaatgctgttgaggtatatgtcaacattatgatgtagacgctgatatgttgtttga |
16070608 |
T |
|
| Q |
248 |
atggtacaaatttagaaggtttataaagaaaaaataatcatgttcagttttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactac |
347 |
Q |
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|||||||| | ||||| ||||||| | | ||||||| |||| |||||| ||||||||||||| |||| ||||||||||||||||| |||| |
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| T |
16070607 |
atggtaca----ttgaaggcttataaa-----atctttgatgttcaatttttctaggcttttattccaaacattggtcgtgggatacaaggtgcagctac |
16070517 |
T |
|
| Q |
348 |
ccattgcttgggacaaaagtttgctgaaaagttcgaggtaaactttgaagataagaagggagagaaagcaatggtatggcagaactcatggggctattct |
447 |
Q |
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|||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||| | |||| |
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| T |
16070516 |
ccattgtttgggacaaaagtttgctgagaagtttgagataaactttgaagataagaaggtagagaaaacaatggtttggcagaactcatgggggttttct |
16070417 |
T |
|
| Q |
448 |
actcgaactgtaagcttttaatgtcta |
474 |
Q |
| |
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|||||||||||||||||| |||||||| |
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| T |
16070416 |
actcgaactgtaagctttcaatgtcta |
16070390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 53516572 - 53516521
Alignment:
| Q |
80 |
aggctcttgagatattggaattatataggtgtatatacgaagagtatttggc |
131 |
Q |
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| T |
53516572 |
aggctcttgagatattggaattatacaggcatatgtacgaagagtatttggc |
53516521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 297 - 465
Target Start/End: Original strand, 45354908 - 45355076
Alignment:
| Q |
297 |
ttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgcttgggacaaaagtttgctgaaaagttcgaggtaaactttgaa |
396 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||| ||||||||||| |||||| ||| ||| ||| |||||| |||| |
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| T |
45354908 |
ttcctaggcatttattccaaacactggtcgtggtatacaaggtgcaacttctcattgtttgggacaaaattttgctaaaatgtttgagataaactatgaa |
45355007 |
T |
|
| Q |
397 |
gataagaagggagagaaagcaatggtatggcagaactcatggggctattctactcgaactgtaagcttt |
465 |
Q |
| |
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|| |||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||||||| |
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| T |
45355008 |
aatgagaagggagagaaagcaatggtctggcagaactcgtgggcctatagtactcgaactgtaagcttt |
45355076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 45354663 - 45354776
Alignment:
| Q |
48 |
tttttcaaaatactctaaactgttattgtttcaggctcttgagatattggaattatataggtgtatatacgaagagtatttggccgttcctgtcataaag |
147 |
Q |
| |
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|||||| |||| |||||||| | ||||||||||| |||||||| |||||||||||| || |||| || |||||||||||||| ||||||||| ||||| |
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| T |
45354663 |
tttttctaaatgttctaaactataattgtttcaggtgcttgagattttggaattatatcggcgtatctatgaagagtatttggcagttcctgtcgtaaag |
45354762 |
T |
|
| Q |
148 |
ggtacaaaaagtga |
161 |
Q |
| |
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|||| |||||||| |
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|
| T |
45354763 |
ggtaagaaaagtga |
45354776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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