View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18122_low_3 (Length: 563)
Name: NF18122_low_3
Description: NF18122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18122_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 11 - 545
Target Start/End: Original strand, 43347378 - 43347912
Alignment:
| Q |
11 |
ggagcagagagcaacaatttcacctctggtttgacccaactgctgattttcacaattacaccattcactggaatcccacagaaattgtgtaagttattca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43347378 |
ggagcagagagcaacaatttcacctctggtttgacccaactgctgattttcacaattacaccattcactggaatcccacagaaattgtgtaagttattca |
43347477 |
T |
|
| Q |
111 |
cttcctcattagcataacaaagaactataatgttaatacccatctaaaatctaatcgcctgatctatgtgattatcatcactcttaattctcagatggta |
210 |
Q |
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| T |
43347478 |
cttcctcattagcataacaaagaactataatgttaatacccatctaaaatctaatcgcctgatctatgtgattatcatcactcttaattctcagatggta |
43347577 |
T |
|
| Q |
211 |
tgttgatagcatgccaatacgggttttccgaaactacgaacacgaaggcattgcttatccaaacaagcaaggaatgagggtttatacaagcctatggaat |
310 |
Q |
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| T |
43347578 |
tgttgatagcatgccaatacgggttttccgaaactacgaacacgaaggcattgcttatccaaacaagcaaggaatgagggtttatacaagcctatggaat |
43347677 |
T |
|
| Q |
311 |
gcagataactgggcaacaagaggcggactcgtgaaaaccgattggagcaaagcaccattcaaagtagggtttcatcatttcagagcaagagcttgcaagt |
410 |
Q |
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| T |
43347678 |
gcagataactgggcaacaagaggcggactcgtgaaaaccgattggagcaaagcaccattcaaagtagggtttcatcatttcagagcaagagcttgcaagt |
43347777 |
T |
|
| Q |
411 |
ggaatggagcagcaagcattaatcaatgtgcctctaatgtcaaagcaaattggtggacatcttcggtatacaaacaccttagttatggcaagataaggca |
510 |
Q |
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| T |
43347778 |
ggaatggagcagcaagcattaatcaatgtgcctctaatgtcaaagcaaattggtggacatcttcggtatacaaacaccttagttatggaaagataaggca |
43347877 |
T |
|
| Q |
511 |
gttgaattgggtgaagaagaatttcatgacctatg |
545 |
Q |
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| T |
43347878 |
gttgaattgggtgaagaagaatttcatgacctatg |
43347912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 206 - 421
Target Start/End: Original strand, 33450359 - 33450574
Alignment:
| Q |
206 |
tggtatgttgatagcatgccaatacgggttttccgaaactacgaacacgaaggcattgcttatccaaacaagcaaggaatgagggtttatacaagcctat |
305 |
Q |
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|||||| |||||||||| ||||| |||||||| ||||||| ||| | || |||||||| || ||||||||||||||||||| |||||||||||| ||| |
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| T |
33450359 |
tggtatattgatagcataccaattagggttttcagaaactatgaaaatgagggcattgcatacccaaacaagcaaggaatgaaggtttatacaagtttat |
33450458 |
T |
|
| Q |
306 |
ggaatgcagataactgggcaacaagaggcggactcgtgaaaaccgattggagcaaagcaccattcaaagtagggtttcatcatttcagagcaagagcttg |
405 |
Q |
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| T |
33450459 |
ggaatgcagataattgggccacaagaggtggacttgttaaaacaaattggactaatgcaccatttgtagccaaatttaatcattttagagcaagagcttg |
33450558 |
T |
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| Q |
406 |
caagtggaatggagca |
421 |
Q |
| |
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|| |||||||||||| |
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| T |
33450559 |
taaatggaatggagca |
33450574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 33449599 - 33449688
Alignment:
| Q |
16 |
agagagcaacaatttcacctctggtttgacccaactgctgattttcacaattacaccattcactggaatcccacagaaattgtgtaagtt |
105 |
Q |
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||||||||||||||| | || |||||||||||||||||||||||||| || ||||| || || ||||| || || ||||||||||||||| |
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| T |
33449599 |
agagagcaacaattttatctttggtttgacccaactgctgattttcataactacactatccattggaaccctactgaaattgtgtaagtt |
33449688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 53499025 - 53499074
Alignment:
| Q |
15 |
cagagagcaacaatttcacctctggtttgacccaactgctgattttcaca |
64 |
Q |
| |
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|||||||||||||||| |||| ||||||||||||||||| |||||||||| |
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| T |
53499025 |
cagagagcaacaattttacctttggtttgacccaactgcagattttcaca |
53499074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 53492720 - 53492769
Alignment:
| Q |
15 |
cagagagcaacaatttcacctctggtttgacccaactgctgattttcaca |
64 |
Q |
| |
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| T |
53492720 |
cagagagcaacaaatttacctttggtttgacccaactgcagattttcaca |
53492769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 53502447 - 53502498
Alignment:
| Q |
305 |
tggaatgcagataactgggcaacaagaggcggactcgtgaaaaccgattgga |
356 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| || || || ||||||| |
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| T |
53502447 |
tggaatgcagataactgggcaacaagaggtggactagtcaagacagattgga |
53502498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 53495068 - 53495138
Alignment:
| Q |
16 |
agagagcaacaatttcacctctggtttgacccaactgctgattttcacaattacaccattcactggaatcc |
86 |
Q |
| |
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||||| |||||||| || || |||||||| ||||||||||||||||||| ||| |||||| |||||||| |
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| T |
53495068 |
agagaacaacaattccatctatggtttgatccaactgctgattttcacacatactccattctttggaatcc |
53495138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 37188660 - 37188709
Alignment:
| Q |
15 |
cagagagcaacaatttcacctctggtttgacccaactgctgattttcaca |
64 |
Q |
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||||||||||||||| |||| ||||||||||||||||| |||||||||| |
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| T |
37188660 |
cagagagcaacaattctacctatggtttgacccaactgcagattttcaca |
37188709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 32709833 - 32709901
Alignment:
| Q |
303 |
tatggaatgcagataactgggcaacaagaggcggactcgtgaaaaccgattggagcaaagcaccattca |
371 |
Q |
| |
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|||||||||||||| | |||||||||||||| ||| | | |||||| |||||| |||||||||||||| |
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| T |
32709833 |
tatggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcaccattca |
32709901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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