View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18122_low_4 (Length: 506)
Name: NF18122_low_4
Description: NF18122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18122_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 496
Target Start/End: Complemental strand, 38937868 - 38937390
Alignment:
| Q |
18 |
atctaagcttcaatttcttgagctgaacaacatttcagctcatggggaaattccttcttccataggtcaactaaaggagttggtgcatcttgatctcagt |
117 |
Q |
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| T |
38937868 |
atctaagcttcaatttcttgagctgaacaacatttcagctcatggggaaattccttcttccataggtcaactaaaggagttagtgcatcttgatctcagt |
38937769 |
T |
|
| Q |
118 |
gctaactttttgaactctaaagttccttctgagcttggcctatgcacaaatctaactttcttgagcttagcagtaaataacctgacaggttctttgcctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38937768 |
gctaactttttgaactctaaagttccttctgagcttggcctatgcacaaatctaactttcttgagcttagcagtaaataacctgacaggttctttgcctt |
38937669 |
T |
|
| Q |
218 |
tgtcattagcaaatttgactaaactatcagaactaggattatcggataattctttttctggtcaaatttcagcttcattgatctctaattggactgagtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| |
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| T |
38937668 |
tgtcattagcaaatttgactaaactatcagaactaggattatcggataattctttttctggtcaaatttcagcttcattggtatctaattggaccaagtt |
38937569 |
T |
|
| Q |
318 |
aacttctttgcaactccnnnnnnntaggttaacaggaatgattcctccacaaattggcttgttgnnnnnnnttaaaattctttttctctacaaaaatctt |
417 |
Q |
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|||||| |||||||||| ||| ||||| |||| | | |||||||| |||||||| || ||| ||| | |||| ||||| ||| | |
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| T |
38937568 |
aacttccttgcaactccaaaacaatagtttaactggaaagctacctccacagattggcttactgaaaaaaattataatcttacttctgtacaataatatg |
38937469 |
T |
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| Q |
418 |
ttctccggtcccattcctgaagagtttggaaacttaaaggaaatgacagagttagacctttcaggaaaccatttctctg |
496 |
Q |
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|| || ||||| || ||||| ||| | |||||||| |||| |||||||| ||||||||||||||||||||| ||||||| |
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| T |
38937468 |
ttgtctggtccaatccctgatgagataggaaacttgaaggtaatgacagggttagacctttcaggaaaccacttctctg |
38937390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 111 - 496
Target Start/End: Original strand, 39305177 - 39305562
Alignment:
| Q |
111 |
tctcagtgctaactttttgaactctaaagttccttctgagcttggcctatgcacaaatctaactttcttgagcttagcagtaaataacctgacaggttct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39305177 |
tctcagtgctaactttttgaactctaaagttccttctgagcttggcctatgcacaaatctaactttcttgagcttagcagtaaataacctgacaggttct |
39305276 |
T |
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| Q |
211 |
ttgcctttgtcattagcaaatttgactaaactatcagaactaggattatcggataattctttttctggtcaaatttcagcttcattgatctctaattgga |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
39305277 |
ttgcctttgtcattagcaaatttgactaaactatcagaactaggattatcggataattctttttctggtcaaatttcagcttcattggtatctaattgga |
39305376 |
T |
|
| Q |
311 |
ctgagttaacttctttgcaactccnnnnnnntaggttaacaggaatgattcctccacaaattggcttgttgnnnnnnnttaaaattctttttctctacaa |
410 |
Q |
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| T |
39305377 |
ccaagttaacttccttgcaactccaaaacaatagtttaactggaaagctacctccacagattggcttactgaaaaaaattataatcttacttctgtacaa |
39305476 |
T |
|
| Q |
411 |
aaatcttttctccggtcccattcctgaagagtttggaaacttaaaggaaatgacagagttagacctttcaggaaaccatttctctg |
496 |
Q |
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||| | || || ||||| || ||||| ||| | |||||||| |||| |||||||| ||||||||||||||||||||| ||||||| |
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| T |
39305477 |
taatatgttgtctggtccaatccctgatgagataggaaacttgaaggtaatgacagggttagacctttcaggaaaccacttctctg |
39305562 |
T |
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