View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18122_low_5 (Length: 473)
Name: NF18122_low_5
Description: NF18122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18122_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 100 - 398
Target Start/End: Complemental strand, 35057992 - 35057709
Alignment:
| Q |
100 |
gaaaaatgattggtccacatgattagnnnnnnnaagaagtaaacaaaagtgaataatttctcattaattgaatagagagtttgcaaactgatatatata- |
198 |
Q |
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| T |
35057992 |
gaaaaatgattggtccacatgattagtttttttaagatgtaaacaaaagtgaagaatttctcattaattgaatagagagtttgcaa-ctgatatatatat |
35057894 |
T |
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| Q |
199 |
-catttgatcatgtactcttaactaacttgtactacagtctagttgtactacgtactatatgagaaatgtactacattaagtgacttgcactacaagcta |
297 |
Q |
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| T |
35057893 |
acatttgatcatgtactcttaactaacttgtactac----------------gtactatatgagaaatgtactacattaagtgacttgcactacaagcta |
35057810 |
T |
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| Q |
298 |
caactattaactcttctttcacttttatttgttcatggtggaataactacaactacattcttgacagttgggatgacaaaaacctgtgcttcattcttta |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35057809 |
caactattaactcttctttcacttttatttgttcatggtggaataactacaactacattcttgacaattgggatgacaaaaacctgtgcttcattcttta |
35057710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 133 - 402
Target Start/End: Complemental strand, 43018712 - 43018447
Alignment:
| Q |
133 |
aagaagtaaacaaaagtgaataatttctcattaattgaatagagagtttgcaaactgatatatataca--tttgatcatgtactcttaactaacttgtac |
230 |
Q |
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||||||| || |||| |||| ||||| |||||||||||||| ||| ||| ||| | |||||||||||| |||||| ||||||| |||||||||| |
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| T |
43018712 |
aagaagtgaagaaaaatgaagaatttttcattaattgaataaagacttttcaacc-gatatatatacacatttgatattgtactcgtaactaactt---- |
43018618 |
T |
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| Q |
231 |
tacagtctagttgtactacgtactatatgagaaatgtactacattaagtgacttgcactacaagctacaactattaactct--tctttcacttttatttg |
328 |
Q |
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||| |||||||||||||| | |||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
43018617 |
-acactctagttgtactacat--tatatgagaaatgttctacattcagtgacttgcaccacaagctacaactattaactctcttctttcacttttatttg |
43018521 |
T |
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| Q |
329 |
ttcatggtggaataactacaactacattcttgacagttgggatgacaaaaacctgtgcttcattctttagctta |
402 |
Q |
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||||||||| ||||||||||| ||||||||||||| |||||| ||||||||| ||||||||||||||||||||| |
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| T |
43018520 |
ttcatggtgcaataactacaagtacattcttgacaattgggaggacaaaaacatgtgcttcattctttagctta |
43018447 |
T |
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