View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18122_low_6 (Length: 457)
Name: NF18122_low_6
Description: NF18122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18122_low_6 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 53498831 - 53499286
Alignment:
| Q |
1 |
attgaagtgatttatttggtgtctcattgaacatacagggtagaagcaaaatgacatgtgagaatataagagcaacaacaggacaacatagataacctgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53498831 |
attgaagtgatttatttggtgtctcattgaacatacagggtagaagcaaaatgacatgtgagaatataagagcaacaacaggacaacatagataacctgt |
53498930 |
T |
|
| Q |
101 |
ttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaatacttcttttcaggagagtagctatctctagaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53498931 |
ttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaatacttcttttcaggagagtagctatctctagaat |
53499030 |
T |
|
| Q |
201 |
ctaactcagcacgtattttttgcttcacacaacatattcacagttgctttacaagtgtcatagattccttgagtattaacatctttgtaaggcactggaa |
300 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53499031 |
ctaactcagcacgta-tttttgcttcacacagcatattcacagttgctttacaagtgtcatagattccttgagtatcaacatctttgtaaggcactggaa |
53499129 |
T |
|
| Q |
301 |
tcacaatgacttgagttgatgctactttaggaggtagcaccaatcccttgtcatcaccatgaaccatcaccatcgctccaatctgttaaaaaagcggaca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
53499130 |
tcacaatgacttgagttgatgctactttaggaggtagcaccaatcccttgtcatcgccatgaaccatcaccattgctccaatctgttaaataagcggact |
53499229 |
T |
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| Q |
401 |
aaaatataaatgcaatcgtacataagaggaatccttccattcatgtatactctagac |
457 |
Q |
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||||||||||||||||||||||||| |||| | |||||||||||||||||||||||| |
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| T |
53499230 |
aaaatataaatgcaatcgtacataaaaggagttcttccattcatgtatactctagac |
53499286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 53491235 - 53491693
Alignment:
| Q |
1 |
attgaagtgatttatttggtgtctcattgaacatacagggtagaagcaaaatgacatgtg--agaatataagagcaacaacaggacaacatagataacct |
98 |
Q |
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|||||||||||||||||||| |||||||||||||| | |||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |
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| T |
53491235 |
attgaagtgatttatttggtatctcattgaacataaacagtagaagcaaaatgacatatgtaagaatataagagcaacaacaagacaacatagataacct |
53491334 |
T |
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| Q |
99 |
gtttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaatacttcttttcaggagagtagctatctctaga |
198 |
Q |
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| T |
53491335 |
gcttatttactaaatcctttggcccaatttcaatccttagagggacacctttcaattcccaatcagaatacttcctttcaggagaacagttatctctaga |
53491434 |
T |
|
| Q |
199 |
atctaactcagcacgtattttttgcttcacacaacatattcacagttgctttacaagtgtcatagattccttgagtattaacatctttgtaaggcactgg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
53491435 |
atctaactcagcacgtattttttgcttcacacaacatattcacagttgctttacaagtgtcatagattccttgagtatcaacatctttgtaaggcactgg |
53491534 |
T |
|
| Q |
299 |
aatcacaatgacttgagttgatgctactttaggaggtagcaccaatcccttgtcatcaccatgaaccatcaccatcgctccaatctgttaaaaaagcgga |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491535 |
aatcacaatgacttgagttgatgctactttaggaggtagcaccaatcccttgtcatcaccatgaaccatcaccatcgctccaatctgttaaaaaagcgga |
53491634 |
T |
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| Q |
399 |
caaaaatataaatgcaatcgtacataagaggaatccttccattcatgtatactctagac |
457 |
Q |
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| T |
53491635 |
caaaaatataaatgcaatcgtacataagaggaatccttccattcatgtatactctagac |
53491693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 83 - 388
Target Start/End: Original strand, 16069999 - 16070303
Alignment:
| Q |
83 |
acaacatagataacctgtttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaatacttcttttcaggag |
182 |
Q |
| |
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||||||| |||||||| |||||| ||||| || || ||| |||||||| | ||| |||||| |||||||||||||||||||||||||| ||||| ||| |
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| T |
16069999 |
acaacattaataacctgcttatttcctaaaccctttagcccaatttcaaccattaaagggacacctttcatttcccattcagaatactttctttcaagag |
16070098 |
T |
|
| Q |
183 |
agtagctatctctagaatctaactcagcacgtattttttgcttcacacaacatattcacagttgctttacaagtgtcatagattccttgagtattaacat |
282 |
Q |
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| ||| ||||||||||||||||||| ||||| ||||||| |||||| |||||| ||||| | ||||||||||| ||||| |||||||| | || ||| | |
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| T |
16070099 |
aatagttatctctagaatctaactcggcacgaatttttt-cttcacgcaacatcttcacggctgctttacaagcgtcattgattccttcacaatcaacgt |
16070197 |
T |
|
| Q |
283 |
ctttgtaaggcactggaatcacaatgacttgagttgatgctactttaggaggtagcaccaatcccttgtcatcaccatgaaccatcaccatcgctccaat |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16070198 |
ttttgtaaggcactggaatcacaatgacttgagttgatgctactttaggcggtagcaccaatcccttgtcatcaccatgaaccatcaccatcactccaat |
16070297 |
T |
|
| Q |
383 |
ctgtta |
388 |
Q |
| |
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|||||| |
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| T |
16070298 |
ctgtta |
16070303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 53516478 - 53516516
Alignment:
| Q |
128 |
tcaatccttagagggacgcctttcatttcccattcagaa |
166 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |
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| T |
53516478 |
tcaatccttagagggacacctttcatttcccattcagaa |
53516516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 95 - 396
Target Start/End: Complemental strand, 45355440 - 45355140
Alignment:
| Q |
95 |
acctgtttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaatacttcttttcaggagagtagctatctc |
194 |
Q |
| |
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||||| |||||| |||||||| | |||| ||||||||||||||||| || |||||||||||||| | |||||| ||| | ||||||| ||| | |||| |
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| T |
45355440 |
acctgcttatttgctaaatccttgggcccgatttcaatccttagaggaacacctttcatttcccactgagaatatttccatccaggagaatagttgtctc |
45355341 |
T |
|
| Q |
195 |
tagaatctaactcagcacgtattttttgcttcacacaacatattcacagttgctttacaagtgtcatagattccttgagtattaacatctttgtaaggca |
294 |
Q |
| |
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| | |||| |||||||||| ||| | ||||| ||||||||||||||||||| |||| | ||| ||||||||||||||| | ||||||||||||||| |
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| T |
45355340 |
tggcatctgactcagcacgaattcct-gcttccaacaacatattcacagttgcggtacaggcatcaaagattccttgagtatcagcatctttgtaaggca |
45355242 |
T |
|
| Q |
295 |
ctggaatcacaatgacttgagttgatgctactttaggaggtagcaccaatcccttgtcatcaccatgaaccatcaccatcgctccaatctgttaaaaaag |
394 |
Q |
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| |||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||| |
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| T |
45355241 |
caggaatcacaatgacttgaactgatgctactttaggtggcagcaccaatcccttgtcatcaccatgaaccatcaccatcaccccaatctgttgaaaaag |
45355142 |
T |
|
| Q |
395 |
cg |
396 |
Q |
| |
|
|| |
|
|
| T |
45355141 |
cg |
45355140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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