View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18122_low_8 (Length: 445)
Name: NF18122_low_8
Description: NF18122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18122_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 60 - 435
Target Start/End: Complemental strand, 15836023 - 15835648
Alignment:
| Q |
60 |
accgctgaaaccaccacaaccactaacaatgtctttgtcgatcaaatggtggacaacttcaattctctgccaagtaaccgaaacccactgatggggttca |
159 |
Q |
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| T |
15836023 |
accgctgaaaccaccacaaccactaacaatgtctttgtcgatcaaatggtggacaacttcaattctctggcaagtaaccgaaacccactgatggggttca |
15835924 |
T |
|
| Q |
160 |
ccgagaacatgtcaccgacatttctctccaccggtaacccatgccttgatttcttcttccatgttgtccccgatactccctctgaaacacttgtcgagag |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15835923 |
ccgagaacatgtcaccgacatttctctccaccggtaacccatgccttgatttcttcttccatgttgtccccgatactccctctgaaacacttgtcgagag |
15835824 |
T |
|
| Q |
260 |
actcaaactagcatggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttc |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15835823 |
actcaaactagcatggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttc |
15835724 |
T |
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| Q |
360 |
tacgctgctgctctctggttgcatgaaaatcaccctaaaaccctagctaccaatgtttcttcattcgctgcctttg |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15835723 |
tacgctgctgctctctggttgcatgaaaatcaccctaaaaccctagctaccaatgtttcttcattcgctgcctttg |
15835648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 69 - 435
Target Start/End: Complemental strand, 19796776 - 19796410
Alignment:
| Q |
69 |
accaccacaaccactaacaatgtctttgtcgatcaaatggtggacaacttcaattctctgccaagtaaccgaaacccactgatggggttcaccgagaaca |
168 |
Q |
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| T |
19796776 |
accaccacaaccactaacgatgtcttcctcgatcaaatggtcgccaacttcaattctcttggtagaaaccgaaacccaccgatggggttgacagagaaca |
19796677 |
T |
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| Q |
169 |
tgtcaccgacatttctctccaccggtaacccatgccttgatttcttcttccatgttgtccccgatactccctctgaaacacttgtcgagagactcaaact |
268 |
Q |
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||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||| ||||||||||| || |||||||||||||| |
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| T |
19796676 |
tgtcaccaacgtttctctccaccggtaacccttgcctcgatttcttcttccatgttgttcctgatactccttctgaaacactcgttgagagactcaaact |
19796577 |
T |
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| Q |
269 |
agcatggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgctgct |
368 |
Q |
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|| |||||||| ||||| |||||| |||||||||||||||||||||||||||| || || |||||||| |||||||| ||||||||||||||||| || |
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| T |
19796576 |
tgcttggtcccaaaaccctctcaccgccctcaaactcgtctgtaacctccgtggcgtccgcggtaccggaaagtccaacaaagaaggcttctacgccgcc |
19796477 |
T |
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| Q |
369 |
gctctctggttgcatgaaaatcaccctaaaaccctagctaccaatgtttcttcattcgctgcctttg |
435 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||| ||||| |
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| T |
19796476 |
gctctctggtttcatgaaaatcaccctaaaaccctagctaccaatgttccttctctcgctgactttg |
19796410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 19796836 - 19796793
Alignment:
| Q |
18 |
aaatcaaaccctaaccctaccaccatcccaaccgctcaaaccac |
61 |
Q |
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| T |
19796836 |
aaatcaaaccctaaccctaccaccaccaccaccgctcaaaccac |
19796793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 165 - 407
Target Start/End: Complemental strand, 47713732 - 47713490
Alignment:
| Q |
165 |
aacatgtcaccgacatttctctccaccggtaacccatgccttgatttcttcttccatgttgtccccgatactccctctgaaacacttgtcgagagactca |
264 |
Q |
| |
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||||||||||| |||| |||| | || || |||||||| ||||| ||||||||||||||||||||||| |||||| ||||||| || || |||| |
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| T |
47713732 |
aacatgtcaccaacatatctcactactggcaacccatgtcttgacttcttcttccatgttgtccccgacactccccctgaaactctcctccgacgacttc |
47713633 |
T |
|
| Q |
265 |
aactagcatggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgc |
364 |
Q |
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|| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||| || ||||| |||||||| |
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| T |
47713632 |
aattagcatggtcctataacccactcaccacccttaaactcgtctgtaacctccgcggcgttcgcggtaccggcaagtccgatcgtgaaggtttctacgc |
47713533 |
T |
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| Q |
365 |
tgctgctctctggttgcatgaaaatcaccctaaaaccctagct |
407 |
Q |
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|||||||| ||||| || | | |||||||||||||||||| |
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| T |
47713532 |
cgctgctctttggtttcaccactaccaccctaaaaccctagct |
47713490 |
T |
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